RNA–Protein interactions for RNA: ENST00000470606.5

GTF3A-206, Transcript of general transcription factor IIIA, humanhuman

TSL 2

Gene GTF3A, Length 1,919 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-206ENST00000470606 CABP2Q9NPB3 220 aa11.47□□□□□ -0.57
GTF3A-206ENST00000470606 POGKQ9P215 609 aa11.47□□□□□ -0.57
GTF3A-206ENST00000470606 TBX22Q9Y458 520 aa11.47□□□□□ -0.57
GTF3A-206ENST00000470606 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.46□□□□□ -0.57
GTF3A-206ENST00000470606 YTHDC1Q96MU7 727 aaKnown RBP11.46□□□□□ -0.58
GTF3A-206ENST00000470606 EVC2Q86UK5 1308 aa11.45□□□□□ -0.58
GTF3A-206ENST00000470606 ANKLE2Q86XL3 938 aa11.45□□□□□ -0.58
GTF3A-206ENST00000470606 FAM135BQ49AJ0 1406 aa11.45□□□□□ -0.58
GTF3A-206ENST00000470606 XRN1Q8IZH2 1706 aaKnown RBP11.45□□□□□ -0.58
GTF3A-206ENST00000470606 SLC24A1O60721 1099 aa11.45□□□□□ -0.58
GTF3A-206ENST00000470606 DIP2AQ14689 1571 aa11.44□□□□□ -0.58
GTF3A-206ENST00000470606 AMER1Q5JTC6 1135 aaPredicted RBP11.44□□□□□ -0.58
GTF3A-206ENST00000470606 SIRT1Q96EB6 747 aa11.44□□□□□ -0.58
GTF3A-206ENST00000470606 CDK19Q9BWU1 502 aa11.43□□□□□ -0.58
GTF3A-206ENST00000470606 AMOTL2Q9Y2J4 779 aa11.43□□□□□ -0.58
GTF3A-206ENST00000470606 PARD3Q8TEW0 1356 aa11.43□□□□□ -0.58
GTF3A-206ENST00000470606 CHD2O14647 1828 aaKnown RBP11.43□□□□□ -0.58
GTF3A-206ENST00000470606 NCKAP5LQ9HCH0 1330 aa11.43□□□□□ -0.58
GTF3A-206ENST00000470606 PUS7Q96PZ0 661 aaKnown RBP11.43□□□□□ -0.58
GTF3A-206ENST00000470606 CD163L1Q9NR16 1453 aa11.42□□□□□ -0.58
GTF3A-206ENST00000470606 KCNA6P17658 529 aa11.41□□□□□ -0.58
GTF3A-206ENST00000470606 CC2D1BQ5T0F9 858 aaKnown RBP11.41□□□□□ -0.58
GTF3A-206ENST00000470606 TMC1Q8TDI8 760 aa11.41□□□□□ -0.58
GTF3A-206ENST00000470606 HSPA2P54652 639 aa11.41□□□□□ -0.58
GTF3A-206ENST00000470606 SRPK2P78362 688 aaKnown RBP11.41□□□□□ -0.58
GTF3A-206ENST00000470606 NPHP4O75161 1426 aaPredicted RBP11.4□□□□□ -0.58
GTF3A-206ENST00000470606 PTCH1Q13635 1447 aa11.4□□□□□ -0.58
GTF3A-206ENST00000470606 WASLO00401 505 aaPredicted RBP11.4□□□□□ -0.58
GTF3A-206ENST00000470606 LMTK3Q96Q04 1460 aa11.39□□□□□ -0.59
GTF3A-206ENST00000470606 PRR36Q9H6K5 1346 aa11.39□□□□□ -0.59
GTF3A-206ENST00000470606 ADGRB2O60241 1585 aa11.39□□□□□ -0.59
GTF3A-206ENST00000470606 KTN1Q86UP2 1357 aaKnown RBP11.39□□□□□ -0.59
GTF3A-206ENST00000470606 PIK3R4Q99570 1358 aa11.39□□□□□ -0.59
GTF3A-206ENST00000470606 KNSTRNQ9Y448 316 aa11.39□□□□□ -0.59
GTF3A-206ENST00000470606 A0A1W2PP64 1363 aa11.38□□□□□ -0.59
GTF3A-206ENST00000470606 CABP1Q9NZU7 370 aa11.38□□□□□ -0.59
GTF3A-206ENST00000470606 NSD3Q9BZ95 1437 aa11.38□□□□□ -0.59
GTF3A-206ENST00000470606 ATAD2Q6PL18 1390 aa11.37□□□□□ -0.59
GTF3A-206ENST00000470606 ANKRD36BQ8N2N9 1353 aa11.37□□□□□ -0.59
GTF3A-206ENST00000470606 RALBP1Q15311 655 aa11.37□□□□□ -0.59
GTF3A-206ENST00000470606 RBM33Q96EV2 1170 aaKnown RBP11.37□□□□□ -0.59
GTF3A-206ENST00000470606 MRS2Q9HD23 443 aa11.37□□□□□ -0.59
GTF3A-206ENST00000470606 ATP7BP35670 1465 aa11.37□□□□□ -0.59
GTF3A-206ENST00000470606 NPC1L1Q9UHC9 1359 aa11.37□□□□□ -0.59
GTF3A-206ENST00000470606 RGPD8O14715 1765 aaPredicted RBP11.37□□□□□ -0.59
GTF3A-206ENST00000470606 USP32Q8NFA0 1604 aa11.37□□□□□ -0.59
GTF3A-206ENST00000470606 MYBBP1AQ9BQG0 1328 aaKnown RBP11.36□□□□□ -0.59
GTF3A-206ENST00000470606 STRCQ7RTU9 1775 aa11.36□□□□□ -0.59
GTF3A-206ENST00000470606 STRCP1A6NGW2 1772 aa11.35□□□□□ -0.59
GTF3A-206ENST00000470606 NALCNQ8IZF0 1738 aa11.35□□□□□ -0.59
GTF3A-206ENST00000470606 NUDT16Q96DE0 195 aaKnown RBP11.35□□□□□ -0.59
GTF3A-206ENST00000470606 TOPAZ1Q8N9V7 1692 aa11.34□□□□□ -0.59
GTF3A-206ENST00000470606 NINLQ9Y2I6 1382 aa11.34□□□□□ -0.59
GTF3A-206ENST00000470606 NUTM2FA1L443 756 aa11.34□□□□□ -0.59
GTF3A-206ENST00000470606 PPIP5K1Q6PFW1 1433 aa11.34□□□□□ -0.59
GTF3A-206ENST00000470606 PNISRQ8TF01 805 aaKnown RBP11.33□□□□□ -0.6
GTF3A-206ENST00000470606 CPSF1Q10570 1443 aaKnown RBP11.33□□□□□ -0.6
GTF3A-206ENST00000470606 NWD1Q149M9 1564 aa11.33□□□□□ -0.6
GTF3A-206ENST00000470606 PPP2R1AP30153 589 aa11.33□□□□□ -0.6
GTF3A-206ENST00000470606 ILDR1Q86SU0 546 aaPredicted RBP11.33□□□□□ -0.6
GTF3A-206ENST00000470606 BRD4O60885 1362 aaPredicted RBP11.33□□□□□ -0.6
GTF3A-206ENST00000470606 NKTRP30414 1462 aaKnown RBP11.32□□□□□ -0.6
GTF3A-206ENST00000470606 NLRP13Q86W25 1043 aa11.32□□□□□ -0.6
GTF3A-206ENST00000470606 FAM9BQ8IZU0 186 aa11.32□□□□□ -0.6
GTF3A-206ENST00000470606 CCDC61Q9Y6R9 512 aa11.32□□□□□ -0.6
GTF3A-206ENST00000470606 AKAP12Q02952 1782 aa11.32□□□□□ -0.6
GTF3A-206ENST00000470606 CDC42BPGQ6DT37 1551 aa11.31□□□□□ -0.6
GTF3A-206ENST00000470606 FYB1O15117 783 aa11.31□□□□□ -0.6
GTF3A-206ENST00000470606 MON2Q7Z3U7 1717 aa11.3□□□□□ -0.6
GTF3A-206ENST00000470606 FMN2Q9NZ56 1722 aa11.3□□□□□ -0.6
GTF3A-206ENST00000470606 TERF2IPQ9NYB0 399 aa11.3□□□□□ -0.6
GTF3A-206ENST00000470606 CGNL1Q0VF96 1302 aa11.29□□□□□ -0.6
GTF3A-206ENST00000470606 GGNBP2Q9H3C7 697 aa11.29□□□□□ -0.6
GTF3A-206ENST00000470606 ITSN1Q15811 1721 aa11.28□□□□□ -0.6
GTF3A-206ENST00000470606 ANKRD26Q9UPS8 1709 aa11.28□□□□□ -0.6
GTF3A-206ENST00000470606 KIF20BQ96Q89 1820 aa11.28□□□□□ -0.6
GTF3A-206ENST00000470606 PLEKHG3A1L390 1219 aa11.28□□□□□ -0.6
GTF3A-206ENST00000470606 ADGRL3Q9HAR2 1447 aa11.28□□□□□ -0.6
GTF3A-206ENST00000470606 TNNT2P45379 298 aaPredicted RBP11.27□□□□□ -0.6
GTF3A-206ENST00000470606 HDGFL2Q7Z4V5 671 aaPredicted RBP11.27□□□□□ -0.6
GTF3A-206ENST00000470606 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.27□□□□□ -0.6
GTF3A-206ENST00000470606 NRKQ7Z2Y5 1582 aa11.27□□□□□ -0.61
GTF3A-206ENST00000470606 ACEP12821 1306 aa11.27□□□□□ -0.61
GTF3A-206ENST00000470606 SENP3-EIF4A1A0A087X0R7 540 aa11.27□□□□□ -0.61
GTF3A-206ENST00000470606 ZRANB1Q9UGI0 708 aa11.27□□□□□ -0.61
GTF3A-206ENST00000470606 FBLN1P23142 703 aa11.26□□□□□ -0.61
GTF3A-206ENST00000470606 MORC1Q86VD1 984 aa11.26□□□□□ -0.61
GTF3A-206ENST00000470606 PMFBP1Q8TBY8 1022 aa11.26□□□□□ -0.61
GTF3A-206ENST00000470606 XIRP1Q702N8 1843 aaKnown RBP11.26□□□□□ -0.61
GTF3A-206ENST00000470606 NSD2O96028 1365 aa11.26□□□□□ -0.61
GTF3A-206ENST00000470606 EDC4Q6P2E9 1401 aaKnown RBP11.25□□□□□ -0.61
GTF3A-206ENST00000470606 SSH2Q76I76 1423 aa11.25□□□□□ -0.61
GTF3A-206ENST00000470606 HNRNPUQ00839 825 aaKnown RBP eCLIP11.25□□□□□ -0.61
GTF3A-206ENST00000470606 NME9Q86XW9 330 aa11.25□□□□□ -0.61
GTF3A-206ENST00000470606 ANKARQ7Z5J8 1434 aa11.25□□□□□ -0.61
GTF3A-206ENST00000470606 POLR3AO14802 1390 aaPredicted RBP11.25□□□□□ -0.61
GTF3A-206ENST00000470606 USP6P35125 1406 aa11.24□□□□□ -0.61
GTF3A-206ENST00000470606 CENPBP07199 599 aaPredicted RBP11.24□□□□□ -0.61
GTF3A-206ENST00000470606 PROSER2Q86WR7 435 aaPredicted RBP11.24□□□□□ -0.61
GTF3A-206ENST00000470606 TMEM94Q12767 1356 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms