RNA–Protein interactions for RNA: ENST00000470537.1

XRN1-208, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 2

Gene XRN1, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-208ENST00000470537 RBM33Q96EV2 1170 aaKnown RBP13.73□□□□□ -0.21
XRN1-208ENST00000470537 DAPK1P53355 1430 aa13.73□□□□□ -0.21
XRN1-208ENST00000470537 PLSCR2Q9NRY7 297 aa13.72□□□□□ -0.21
XRN1-208ENST00000470537 CHIC2Q9UKJ5 165 aa13.72□□□□□ -0.21
XRN1-208ENST00000470537 TBX22Q9Y458 520 aa13.72□□□□□ -0.21
XRN1-208ENST00000470537 NOS1P29475 1434 aa13.72□□□□□ -0.21
XRN1-208ENST00000470537 ATF3P18847 181 aa13.71□□□□□ -0.21
XRN1-208ENST00000470537 C19orf44Q9H6X5 657 aa13.71□□□□□ -0.21
XRN1-208ENST00000470537 RPRD2Q5VT52 1461 aaKnown RBP13.71□□□□□ -0.21
XRN1-208ENST00000470537 PTPN23Q9H3S7 1636 aa13.71□□□□□ -0.22
XRN1-208ENST00000470537 PLEKHG1Q9ULL1 1385 aa13.71□□□□□ -0.22
XRN1-208ENST00000470537 FGD6Q6ZV73 1430 aa13.7□□□□□ -0.22
XRN1-208ENST00000470537 ADGRB3O60242 1522 aa13.69□□□□□ -0.22
XRN1-208ENST00000470537 CROCC2H7BZ55 1655 aa13.69□□□□□ -0.22
XRN1-208ENST00000470537 NUBP1P53384 320 aa13.69□□□□□ -0.22
XRN1-208ENST00000470537 PCDHB13Q9Y5F0 798 aa13.69□□□□□ -0.22
XRN1-208ENST00000470537 NWD1Q149M9 1564 aa13.69□□□□□ -0.22
XRN1-208ENST00000470537 PHLPP1O60346 1717 aa13.69□□□□□ -0.22
XRN1-208ENST00000470537 LOC105371045A0A1W2PR82 267 aa13.68□□□□□ -0.22
XRN1-208ENST00000470537 TTLL13PA6NNM8 815 aa13.68□□□□□ -0.22
XRN1-208ENST00000470537 SCUBE2Q9NQ36 999 aa13.68□□□□□ -0.22
XRN1-208ENST00000470537 POTEMA6NI47 508 aa13.67□□□□□ -0.22
XRN1-208ENST00000470537 FAM212AQ96EL1 285 aa13.67□□□□□ -0.22
XRN1-208ENST00000470537 PIK3R4Q99570 1358 aa13.67□□□□□ -0.22
XRN1-208ENST00000470537 CHGAP10645 457 aaKnown RBP13.66□□□□□ -0.22
XRN1-208ENST00000470537 RXRBP28702 533 aa13.66□□□□□ -0.22
XRN1-208ENST00000470537 SGIP1Q9BQI5 828 aa13.66□□□□□ -0.22
XRN1-208ENST00000470537 RIMS2Q9UQ26 1411 aa13.65□□□□□ -0.22
XRN1-208ENST00000470537 ANKRD50Q9ULJ7 1429 aa13.64□□□□□ -0.23
XRN1-208ENST00000470537 POTEFA5A3E0 1075 aa13.64□□□□□ -0.23
XRN1-208ENST00000470537 UPF1Q92900 1129 aaKnown RBP eCLIP13.64□□□□□ -0.23
XRN1-208ENST00000470537 CHD2O14647 1828 aaKnown RBP13.64□□□□□ -0.23
XRN1-208ENST00000470537 ZFYVE9O95405 1425 aa13.64□□□□□ -0.23
XRN1-208ENST00000470537 SEC24BO95487 1268 aa13.63□□□□□ -0.23
XRN1-208ENST00000470537 FAM50AQ14320 339 aaKnown RBP13.63□□□□□ -0.23
XRN1-208ENST00000470537 POTEGQ6S5H5 508 aa13.63□□□□□ -0.23
XRN1-208ENST00000470537 TRIM52Q96A61 297 aa13.63□□□□□ -0.23
XRN1-208ENST00000470537 ADGRL2O95490 1459 aa13.61□□□□□ -0.23
XRN1-208ENST00000470537 TRIM35Q9UPQ4 493 aa13.61□□□□□ -0.23
XRN1-208ENST00000470537 LRRC59Q96AG4 307 aaKnown RBP13.6□□□□□ -0.23
XRN1-208ENST00000470537 AMOTL2Q9Y2J4 779 aa13.6□□□□□ -0.23
XRN1-208ENST00000470537 COL16A1Q07092 1604 aaPredicted RBP13.6□□□□□ -0.23
XRN1-208ENST00000470537 DIP2AQ14689 1571 aa13.59□□□□□ -0.23
XRN1-208ENST00000470537 IFNL1Q8IU54 200 aa13.59□□□□□ -0.23
XRN1-208ENST00000470537 TMEM131LA2VDJ0 1609 aa13.58□□□□□ -0.24
XRN1-208ENST00000470537 NUTM2BA6NNL0 878 aaPredicted RBP13.58□□□□□ -0.24
XRN1-208ENST00000470537 NUTM2EB1AL46 878 aaPredicted RBP13.58□□□□□ -0.24
XRN1-208ENST00000470537 BRINP3Q76B58 766 aa13.58□□□□□ -0.24
XRN1-208ENST00000470537 NUTM2AQ8IVF1 878 aaPredicted RBP13.58□□□□□ -0.24
XRN1-208ENST00000470537 COLQQ9Y215 455 aaPredicted RBP13.58□□□□□ -0.24
XRN1-208ENST00000470537 AHDC1Q5TGY3 1603 aaPredicted RBP13.57□□□□□ -0.24
XRN1-208ENST00000470537 DCCP43146 1447 aa13.57□□□□□ -0.24
XRN1-208ENST00000470537 CDK12Q9NYV4 1490 aaPredicted RBP13.57□□□□□ -0.24
XRN1-208ENST00000470537 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.56□□□□□ -0.24
XRN1-208ENST00000470537 NUTM2DQ5VT03 806 aaPredicted RBP13.56□□□□□ -0.24
XRN1-208ENST00000470537 SHPRHQ149N8 1683 aa13.56□□□□□ -0.24
XRN1-208ENST00000470537 GCC2Q8IWJ2 1684 aa13.56□□□□□ -0.24
XRN1-208ENST00000470537 SETD1AO15047 1707 aaKnown RBP13.56□□□□□ -0.24
XRN1-208ENST00000470537 ADAMTS13Q76LX8 1427 aa13.56□□□□□ -0.24
XRN1-208ENST00000470537 TRPM2O94759 1503 aa13.55□□□□□ -0.24
XRN1-208ENST00000470537 LRP6O75581 1613 aa13.55□□□□□ -0.24
XRN1-208ENST00000470537 IER5LQ5T953 404 aa13.55□□□□□ -0.24
XRN1-208ENST00000470537 NGLY1Q96IV0 654 aa13.55□□□□□ -0.24
XRN1-208ENST00000470537 FBXO3Q9UK99 471 aa13.55□□□□□ -0.24
XRN1-208ENST00000470537 RBM6P78332 1123 aaKnown RBP13.54□□□□□ -0.24
XRN1-208ENST00000470537 MYO5BQ9ULV0 1848 aa13.54□□□□□ -0.24
XRN1-208ENST00000470537 AFF2P51816 1311 aa13.54□□□□□ -0.24
XRN1-208ENST00000470537 TMEM106CQ9BVX2 250 aa13.53□□□□□ -0.24
XRN1-208ENST00000470537 QTRT2Q9H974 415 aaKnown RBP13.53□□□□□ -0.24
XRN1-208ENST00000470537 SETD5Q9C0A6 1442 aa13.53□□□□□ -0.24
XRN1-208ENST00000470537 ZNF326Q5BKZ1 582 aaKnown RBP13.52□□□□□ -0.25
XRN1-208ENST00000470537 FAM163AQ96GL9 167 aaPredicted RBP13.52□□□□□ -0.25
XRN1-208ENST00000470537 NUP155O75694 1391 aa13.51□□□□□ -0.25
XRN1-208ENST00000470537 ROCK1Q13464 1354 aa13.51□□□□□ -0.25
XRN1-208ENST00000470537 DCAF8Q5TAQ9 597 aa13.51□□□□□ -0.25
XRN1-208ENST00000470537 C8orf37Q96NL8 207 aa13.51□□□□□ -0.25
XRN1-208ENST00000470537 UNC13BO14795 1591 aa13.49□□□□□ -0.25
XRN1-208ENST00000470537 ASXL1Q8IXJ9 1541 aa13.49□□□□□ -0.25
XRN1-208ENST00000470537 MST1RQ04912 1400 aa13.47□□□□□ -0.25
XRN1-208ENST00000470537 PTPRUQ92729 1446 aa13.47□□□□□ -0.25
XRN1-208ENST00000470537 E9PCH4 1651 aa13.47□□□□□ -0.25
XRN1-208ENST00000470537 PYGBP11216 843 aa13.46□□□□□ -0.25
XRN1-208ENST00000470537 LCE2DQ5TA82 110 aaPredicted RBP13.46□□□□□ -0.25
XRN1-208ENST00000470537 IQGAP3Q86VI3 1631 aa13.46□□□□□ -0.26
XRN1-208ENST00000470537 ATAD2Q6PL18 1390 aa13.45□□□□□ -0.26
XRN1-208ENST00000470537 CCDC125Q86Z20 511 aa13.45□□□□□ -0.26
XRN1-208ENST00000470537 TRPC5Q9UL62 973 aaPredicted RBP13.45□□□□□ -0.26
XRN1-208ENST00000470537 SETBP1Q9Y6X0 1596 aa13.45□□□□□ -0.26
XRN1-208ENST00000470537 VGFO15240 615 aaPredicted RBP13.44□□□□□ -0.26
XRN1-208ENST00000470537 ADAMTS2O95450 1211 aa13.44□□□□□ -0.26
XRN1-208ENST00000470537 PLCG2P16885 1265 aa13.44□□□□□ -0.26
XRN1-208ENST00000470537 USP21Q9UK80 565 aa13.44□□□□□ -0.26
XRN1-208ENST00000470537 ADGRL3Q9HAR2 1447 aa13.44□□□□□ -0.26
XRN1-208ENST00000470537 SRCAPQ6ZRS2 3230 aa13.44□□□□□ -0.26
XRN1-208ENST00000470537 PNPLA6Q8IY17 1366 aa13.44□□□□□ -0.26
XRN1-208ENST00000470537 PCDH10Q9P2E7 1040 aa13.43□□□□□ -0.26
XRN1-208ENST00000470537 METP08581 1390 aa13.43□□□□□ -0.26
XRN1-208ENST00000470537 NHSL1Q5SYE7 1610 aa13.42□□□□□ -0.26
XRN1-208ENST00000470537 XRN1Q8IZH2 1706 aaKnown RBP13.42□□□□□ -0.26
XRN1-208ENST00000470537 FNBP4Q8N3X1 1017 aaPredicted RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms