RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 HSPA1LP34931 641 aa21.01■□□□□ 0.95
COL9A3-209ENST00000469852 PIP4K2BP78356 416 aa21.01■□□□□ 0.95
COL9A3-209ENST00000469852 SAFB2Q14151 953 aaKnown RBP eCLIP21.01■□□□□ 0.95
COL9A3-209ENST00000469852 SIRT1Q96EB6 747 aa21■□□□□ 0.95
COL9A3-209ENST00000469852 SCAF1Q9H7N4 1312 aaKnown RBP20.99■□□□□ 0.95
COL9A3-209ENST00000469852 QRICH2Q9H0J4 1663 aa20.99■□□□□ 0.95
COL9A3-209ENST00000469852 POGKQ9P215 609 aa20.97■□□□□ 0.95
COL9A3-209ENST00000469852 USP47Q96K76 1375 aa20.97■□□□□ 0.95
COL9A3-209ENST00000469852 ADGRL3Q9HAR2 1447 aa20.96■□□□□ 0.95
COL9A3-209ENST00000469852 NCOA3Q9Y6Q9 1424 aa20.95■□□□□ 0.95
COL9A3-209ENST00000469852 CENPJQ9HC77 1338 aaPredicted RBP20.95■□□□□ 0.94
COL9A3-209ENST00000469852 ZEB1P37275 1124 aaPredicted RBP20.93■□□□□ 0.94
COL9A3-209ENST00000469852 C14orf37Q86TY3 774 aa20.93■□□□□ 0.94
COL9A3-209ENST00000469852 HIRIP3Q9BW71 556 aaPredicted RBP20.93■□□□□ 0.94
COL9A3-209ENST00000469852 MINK1Q8N4C8 1332 aaPredicted RBP20.93■□□□□ 0.94
COL9A3-209ENST00000469852 EIF3AQ14152 1382 aaKnown RBP20.93■□□□□ 0.94
COL9A3-209ENST00000469852 ADGRB2O60241 1585 aa20.93■□□□□ 0.94
COL9A3-209ENST00000469852 MED1Q15648 1581 aaPredicted RBP20.93■□□□□ 0.94
COL9A3-209ENST00000469852 ST20-MTHFSA0A0A6YYL1 179 aa20.91■□□□□ 0.94
COL9A3-209ENST00000469852 CDC42BPGQ6DT37 1551 aa20.91■□□□□ 0.94
COL9A3-209ENST00000469852 MSH6P52701 1360 aa20.9■□□□□ 0.94
COL9A3-209ENST00000469852 TULP4Q9NRJ4 1543 aa20.89■□□□□ 0.94
COL9A3-209ENST00000469852 C19orf44Q9H6X5 657 aa20.89■□□□□ 0.93
COL9A3-209ENST00000469852 FMN2Q9NZ56 1722 aa20.88■□□□□ 0.93
COL9A3-209ENST00000469852 HSPA5P11021 654 aaKnown RBP20.88■□□□□ 0.93
COL9A3-209ENST00000469852 TESK2Q96S53 571 aa20.87■□□□□ 0.93
COL9A3-209ENST00000469852 DCCP43146 1447 aa20.87■□□□□ 0.93
COL9A3-209ENST00000469852 EIF4G2P78344 907 aaKnown RBP eCLIP20.85■□□□□ 0.93
COL9A3-209ENST00000469852 USP32Q8NFA0 1604 aa20.85■□□□□ 0.93
COL9A3-209ENST00000469852 SBNO2Q9Y2G9 1366 aa20.85■□□□□ 0.93
COL9A3-209ENST00000469852 MST1RQ04912 1400 aa20.84■□□□□ 0.93
COL9A3-209ENST00000469852 RGPD8O14715 1765 aaPredicted RBP20.83■□□□□ 0.93
COL9A3-209ENST00000469852 NUTM2FA1L443 756 aa20.83■□□□□ 0.93
COL9A3-209ENST00000469852 WASLO00401 505 aaPredicted RBP20.82■□□□□ 0.92
COL9A3-209ENST00000469852 ATF3P18847 181 aa20.82■□□□□ 0.92
COL9A3-209ENST00000469852 CDK19Q9BWU1 502 aa20.81■□□□□ 0.92
COL9A3-209ENST00000469852 PRR36Q9H6K5 1346 aa20.8■□□□□ 0.92
COL9A3-209ENST00000469852 CADPS2Q86UW7 1296 aa20.8■□□□□ 0.92
COL9A3-209ENST00000469852 C1orf167Q5SNV9 1468 aa20.8■□□□□ 0.92
COL9A3-209ENST00000469852 ATP7BP35670 1465 aa20.78■□□□□ 0.92
COL9A3-209ENST00000469852 CABP2Q9NPB3 220 aa20.78■□□□□ 0.92
COL9A3-209ENST00000469852 SLAIN2Q9P270 581 aa20.77■□□□□ 0.92
COL9A3-209ENST00000469852 EVC2Q86UK5 1308 aa20.77■□□□□ 0.91
COL9A3-209ENST00000469852 TOPAZ1Q8N9V7 1692 aa20.77■□□□□ 0.91
COL9A3-209ENST00000469852 ROBO1Q9Y6N7 1651 aa20.75■□□□□ 0.91
COL9A3-209ENST00000469852 SRPK2P78362 688 aaKnown RBP20.75■□□□□ 0.91
COL9A3-209ENST00000469852 ANKARQ7Z5J8 1434 aa20.75■□□□□ 0.91
COL9A3-209ENST00000469852 ORAI2Q96SN7 254 aa20.74■□□□□ 0.91
COL9A3-209ENST00000469852 C11orf95C9JLR9 678 aaPredicted RBP20.73■□□□□ 0.91
COL9A3-209ENST00000469852 NUDT16Q96DE0 195 aaKnown RBP20.73■□□□□ 0.91
COL9A3-209ENST00000469852 TMF1P82094 1093 aa20.72■□□□□ 0.91
COL9A3-209ENST00000469852 ITSN1Q15811 1721 aa20.72■□□□□ 0.91
COL9A3-209ENST00000469852 BRINP3Q76B58 766 aa20.71■□□□□ 0.91
COL9A3-209ENST00000469852 ESCO1Q5FWF5 840 aa20.7■□□□□ 0.9
COL9A3-209ENST00000469852 PHF23Q9BUL5 403 aaPredicted RBP20.7■□□□□ 0.9
COL9A3-209ENST00000469852 MYOM1P52179 1685 aa20.68■□□□□ 0.9
COL9A3-209ENST00000469852 PPIP5K1Q6PFW1 1433 aa20.68■□□□□ 0.9
COL9A3-209ENST00000469852 KIF1AQ12756 1690 aa20.67■□□□□ 0.9
COL9A3-209ENST00000469852 PMFBP1Q8TBY8 1022 aa20.67■□□□□ 0.9
COL9A3-209ENST00000469852 DDX17Q92841 729 aaKnown RBP20.67■□□□□ 0.9
COL9A3-209ENST00000469852 NHSL1Q5SYE7 1610 aa20.67■□□□□ 0.9
COL9A3-209ENST00000469852 CCDC61Q9Y6R9 512 aa20.66■□□□□ 0.9
COL9A3-209ENST00000469852 ATAD2Q6PL18 1390 aa20.65■□□□□ 0.9
COL9A3-209ENST00000469852 SLC24A1O60721 1099 aa20.65■□□□□ 0.9
COL9A3-209ENST00000469852 RGS17Q9UGC6 210 aaPredicted RBP20.65■□□□□ 0.9
COL9A3-209ENST00000469852 PHF8Q9UPP1 1060 aa20.65■□□□□ 0.9
COL9A3-209ENST00000469852 KIF7Q2M1P5 1343 aa20.64■□□□□ 0.89
COL9A3-209ENST00000469852 PUS7Q96PZ0 661 aaKnown RBP20.64■□□□□ 0.89
COL9A3-209ENST00000469852 CABP1Q9NZU7 370 aa20.64■□□□□ 0.89
COL9A3-209ENST00000469852 AHDC1Q5TGY3 1603 aaPredicted RBP20.63■□□□□ 0.89
COL9A3-209ENST00000469852 CD163L1Q9NR16 1453 aa20.62■□□□□ 0.89
COL9A3-209ENST00000469852 PLEKHG3A1L390 1219 aa20.62■□□□□ 0.89
COL9A3-209ENST00000469852 POLR3GLQ9BT43 218 aa20.62■□□□□ 0.89
COL9A3-209ENST00000469852 SLC12A5Q9H2X9 1139 aa20.62■□□□□ 0.89
COL9A3-209ENST00000469852 WASHC2AQ641Q2 1341 aa20.61■□□□□ 0.89
COL9A3-209ENST00000469852 FOXO3O43524 673 aa20.61■□□□□ 0.89
COL9A3-209ENST00000469852 AKAP12Q02952 1782 aa20.61■□□□□ 0.89
COL9A3-209ENST00000469852 PHLPP1O60346 1717 aa20.61■□□□□ 0.89
COL9A3-209ENST00000469852 CCDC7Q96M83 1385 aa20.6■□□□□ 0.89
COL9A3-209ENST00000469852 ACEP12821 1306 aa20.6■□□□□ 0.89
COL9A3-209ENST00000469852 XPCQ01831 940 aaPredicted RBP20.6■□□□□ 0.89
COL9A3-209ENST00000469852 CDCA8Q53HL2 280 aa20.6■□□□□ 0.89
COL9A3-209ENST00000469852 TMC1Q8TDI8 760 aa20.6■□□□□ 0.89
COL9A3-209ENST00000469852 PXDNQ92626 1479 aa20.6■□□□□ 0.89
COL9A3-209ENST00000469852 POLR3AO14802 1390 aaPredicted RBP20.59■□□□□ 0.89
COL9A3-209ENST00000469852 COL16A1Q07092 1604 aaPredicted RBP20.58■□□□□ 0.89
COL9A3-209ENST00000469852 CPSF1Q10570 1443 aaKnown RBP20.57■□□□□ 0.88
COL9A3-209ENST00000469852 NGDNQ8NEJ9 315 aaKnown RBP20.57■□□□□ 0.88
COL9A3-209ENST00000469852 TRPM3Q9HCF6 1732 aaPredicted RBP20.57■□□□□ 0.88
COL9A3-209ENST00000469852 MON2Q7Z3U7 1717 aa20.56■□□□□ 0.88
COL9A3-209ENST00000469852 NPHP3Q7Z494 1330 aa20.55■□□□□ 0.88
COL9A3-209ENST00000469852 NRKQ7Z2Y5 1582 aa20.55■□□□□ 0.88
COL9A3-209ENST00000469852 A0A1W2PP64 1363 aa20.55■□□□□ 0.88
COL9A3-209ENST00000469852 NINLQ9Y2I6 1382 aa20.55■□□□□ 0.88
COL9A3-209ENST00000469852 SOS2Q07890 1332 aaPredicted RBP20.54■□□□□ 0.88
COL9A3-209ENST00000469852 KRT28Q7Z3Y7 464 aa20.54■□□□□ 0.88
COL9A3-209ENST00000469852 USP6P35125 1406 aa20.53■□□□□ 0.88
COL9A3-209ENST00000469852 PSME1Q06323 249 aa20.52■□□□□ 0.88
COL9A3-209ENST00000469852 ANKRD36BQ8N2N9 1353 aa20.51■□□□□ 0.87
COL9A3-209ENST00000469852 SSH2Q76I76 1423 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms