RNA–Protein interactions for RNA: ENST00000468612.5

NEDD9-207, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 809 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-207ENST00000468612 BRWD3Q6RI45 1802 aa17.38■□□□□ 0.37
NEDD9-207ENST00000468612 SLIT2O94813 1529 aa17.37■□□□□ 0.37
NEDD9-207ENST00000468612 PSDA5PKW4 1024 aaPredicted RBP17.37■□□□□ 0.37
NEDD9-207ENST00000468612 UNC5CLQ8IV45 518 aa17.37■□□□□ 0.37
NEDD9-207ENST00000468612 PXDNQ92626 1479 aa17.37■□□□□ 0.37
NEDD9-207ENST00000468612 NPHP3Q7Z494 1330 aa17.35■□□□□ 0.37
NEDD9-207ENST00000468612 ROBO2Q9HCK4 1378 aa17.35■□□□□ 0.37
NEDD9-207ENST00000468612 SEPT12Q8IYM1 358 aa17.34■□□□□ 0.37
NEDD9-207ENST00000468612 PRAG1Q86YV5 1406 aa17.32■□□□□ 0.36
NEDD9-207ENST00000468612 ZNF326Q5BKZ1 582 aaKnown RBP17.32■□□□□ 0.36
NEDD9-207ENST00000468612 NEXMIFQ5QGS0 1516 aa17.31■□□□□ 0.36
NEDD9-207ENST00000468612 ONECUT3O60422 494 aaPredicted RBP17.3■□□□□ 0.36
NEDD9-207ENST00000468612 BAG6P46379 1132 aa17.29■□□□□ 0.36
NEDD9-207ENST00000468612 KRT27Q7Z3Y8 459 aa17.29■□□□□ 0.36
NEDD9-207ENST00000468612 XPCQ01831 940 aaPredicted RBP17.28■□□□□ 0.36
NEDD9-207ENST00000468612 FAM50AQ14320 339 aaKnown RBP17.28■□□□□ 0.36
NEDD9-207ENST00000468612 ESCO1Q5FWF5 840 aa17.28■□□□□ 0.36
NEDD9-207ENST00000468612 HFM1A2PYH4 1435 aa17.28■□□□□ 0.36
NEDD9-207ENST00000468612 NUP155O75694 1391 aa17.28■□□□□ 0.36
NEDD9-207ENST00000468612 FOXO3O43524 673 aa17.27■□□□□ 0.36
NEDD9-207ENST00000468612 YY1P25490 414 aa17.27■□□□□ 0.36
NEDD9-207ENST00000468612 VPS72Q15906 364 aa17.27■□□□□ 0.36
NEDD9-207ENST00000468612 APLP2Q06481 763 aa17.26■□□□□ 0.35
NEDD9-207ENST00000468612 CDC42BPGQ6DT37 1551 aa17.26■□□□□ 0.35
NEDD9-207ENST00000468612 USP32Q8NFA0 1604 aa17.25■□□□□ 0.35
NEDD9-207ENST00000468612 LRPPRCP42704 1394 aaKnown RBP17.25■□□□□ 0.35
NEDD9-207ENST00000468612 R3HDM1Q15032 1099 aaKnown RBP17.24■□□□□ 0.35
NEDD9-207ENST00000468612 SPATA31A3Q5VYP0 1347 aa17.23■□□□□ 0.35
NEDD9-207ENST00000468612 ROCK1Q13464 1354 aa17.23■□□□□ 0.35
NEDD9-207ENST00000468612 EN1Q05925 392 aaPredicted RBP17.22■□□□□ 0.35
NEDD9-207ENST00000468612 CLTCL1P53675 1640 aa17.21■□□□□ 0.35
NEDD9-207ENST00000468612 LOC105371045A0A1W2PR82 267 aa17.2■□□□□ 0.34
NEDD9-207ENST00000468612 NWD2Q9ULI1 1742 aa17.2■□□□□ 0.34
NEDD9-207ENST00000468612 DISP2A7MBM2 1401 aa17.2■□□□□ 0.34
NEDD9-207ENST00000468612 PLCH1Q4KWH8 1693 aa17.19■□□□□ 0.34
NEDD9-207ENST00000468612 CCDC9Q9Y3X0 531 aaKnown RBP17.18■□□□□ 0.34
NEDD9-207ENST00000468612 NAIPQ13075 1403 aa17.18■□□□□ 0.34
NEDD9-207ENST00000468612 RGPD1P0DJD0 1748 aa17.18■□□□□ 0.34
NEDD9-207ENST00000468612 CCDC144AA2RUR9 1427 aa17.17■□□□□ 0.34
NEDD9-207ENST00000468612 VGFO15240 615 aaPredicted RBP17.17■□□□□ 0.34
NEDD9-207ENST00000468612 NUTM2FA1L443 756 aa17.14■□□□□ 0.33
NEDD9-207ENST00000468612 KRT28Q7Z3Y7 464 aa17.14■□□□□ 0.33
NEDD9-207ENST00000468612 TNS1Q9HBL0 1735 aaKnown RBP17.13■□□□□ 0.33
NEDD9-207ENST00000468612 KIF1BO60333 1816 aa17.13■□□□□ 0.33
NEDD9-207ENST00000468612 A0A0G2JS52 829 aa17.13■□□□□ 0.33
NEDD9-207ENST00000468612 MYT1Q01538 1121 aa17.13■□□□□ 0.33
NEDD9-207ENST00000468612 EZH2Q15910 746 aaKnown RBP17.13■□□□□ 0.33
NEDD9-207ENST00000468612 FAM98CQ17RN3 349 aaKnown RBP17.13■□□□□ 0.33
NEDD9-207ENST00000468612 CABLES1Q8TDN4 633 aa17.13■□□□□ 0.33
NEDD9-207ENST00000468612 KIF1AQ12756 1690 aa17.13■□□□□ 0.33
NEDD9-207ENST00000468612 TNS3Q68CZ2 1445 aa17.13■□□□□ 0.33
NEDD9-207ENST00000468612 HAP1P54257 671 aaPredicted RBP17.12■□□□□ 0.33
NEDD9-207ENST00000468612 NRAPQ86VF7 1730 aa17.11■□□□□ 0.33
NEDD9-207ENST00000468612 ABCA3Q99758 1704 aa17.11■□□□□ 0.33
NEDD9-207ENST00000468612 FAM83GA6ND36 823 aa17.11■□□□□ 0.33
NEDD9-207ENST00000468612 FAM182BQ5T319 152 aa17.11■□□□□ 0.33
NEDD9-207ENST00000468612 CAMKK2Q96RR4 588 aa17.11■□□□□ 0.33
NEDD9-207ENST00000468612 RPGRIP1LQ68CZ1 1315 aa17.09■□□□□ 0.33
NEDD9-207ENST00000468612 TECPR2O15040 1411 aa17.09■□□□□ 0.33
NEDD9-207ENST00000468612 FMN2Q9NZ56 1722 aa17.09■□□□□ 0.33
NEDD9-207ENST00000468612 SBNO1A3KN83 1393 aa17.08■□□□□ 0.32
NEDD9-207ENST00000468612 WAPLQ7Z5K2 1190 aa17.08■□□□□ 0.32
NEDD9-207ENST00000468612 ARHGEF10O15013 1369 aa17.06■□□□□ 0.32
NEDD9-207ENST00000468612 PSME1Q06323 249 aa17.06■□□□□ 0.32
NEDD9-207ENST00000468612 THSD7AQ9UPZ6 1657 aa17.06■□□□□ 0.32
NEDD9-207ENST00000468612 ADGRB2O60241 1585 aa17.06■□□□□ 0.32
NEDD9-207ENST00000468612 PPLO60437 1756 aa17.05■□□□□ 0.32
NEDD9-207ENST00000468612 PARD3Q8TEW0 1356 aa17.05■□□□□ 0.32
NEDD9-207ENST00000468612 PLEKHH1Q9ULM0 1364 aa17.05■□□□□ 0.32
NEDD9-207ENST00000468612 PLEKHG5O94827 1062 aa17.05■□□□□ 0.32
NEDD9-207ENST00000468612 BTG4Q9NY30 223 aa17.04■□□□□ 0.32
NEDD9-207ENST00000468612 PHF8Q9UPP1 1060 aa17.04■□□□□ 0.32
NEDD9-207ENST00000468612 ABCC11Q96J66 1382 aa17.03■□□□□ 0.32
NEDD9-207ENST00000468612 NINLQ9Y2I6 1382 aa17.03■□□□□ 0.32
NEDD9-207ENST00000468612 SPATA31A5Q5VU36 1347 aa17.03■□□□□ 0.32
NEDD9-207ENST00000468612 SPATA31A7Q8IWB4 1347 aa17.03■□□□□ 0.32
NEDD9-207ENST00000468612 IFFO2Q5TF58 517 aa17.03■□□□□ 0.32
NEDD9-207ENST00000468612 STK26Q9P289 416 aa17.03■□□□□ 0.32
NEDD9-207ENST00000468612 UTRNP46939 3433 aa17.02■□□□□ 0.32
NEDD9-207ENST00000468612 RREB1Q92766 1687 aa17.02■□□□□ 0.32
NEDD9-207ENST00000468612 NRXN1Q9ULB1 1477 aa17.02■□□□□ 0.32
NEDD9-207ENST00000468612 TRIM37O94972 964 aa17.02■□□□□ 0.32
NEDD9-207ENST00000468612 DCAF8L1A6NGE4 600 aa17.01■□□□□ 0.31
NEDD9-207ENST00000468612 LMOD2Q6P5Q4 547 aa17.01■□□□□ 0.31
NEDD9-207ENST00000468612 KNDC1Q76NI1 1749 aa17.01■□□□□ 0.31
NEDD9-207ENST00000468612 COL14A1Q05707 1796 aaKnown RBP17■□□□□ 0.31
NEDD9-207ENST00000468612 NUP188Q5SRE5 1749 aa17■□□□□ 0.31
NEDD9-207ENST00000468612 SPON1Q9HCB6 807 aa17■□□□□ 0.31
NEDD9-207ENST00000468612 RGPD8O14715 1765 aaPredicted RBP17■□□□□ 0.31
NEDD9-207ENST00000468612 APBA3O96018 575 aa16.99■□□□□ 0.31
NEDD9-207ENST00000468612 FAM196AQ6ZSG2 479 aa16.99■□□□□ 0.31
NEDD9-207ENST00000468612 ZNF784Q8NCA9 323 aaPredicted RBP16.99■□□□□ 0.31
NEDD9-207ENST00000468612 PPP1R1BQ9UD71 204 aaPredicted RBP16.99■□□□□ 0.31
NEDD9-207ENST00000468612 ADGRF5Q8IZF2 1346 aa16.98■□□□□ 0.31
NEDD9-207ENST00000468612 RRBP1Q9P2E9 1410 aaKnown RBP16.98■□□□□ 0.31
NEDD9-207ENST00000468612 KCNQ2O43526 872 aa16.98■□□□□ 0.31
NEDD9-207ENST00000468612 IFT172Q9UG01 1749 aa16.97■□□□□ 0.31
NEDD9-207ENST00000468612 ITGAEP38570 1179 aa16.97■□□□□ 0.31
NEDD9-207ENST00000468612 CAMTA1Q9Y6Y1 1673 aa16.97■□□□□ 0.31
NEDD9-207ENST00000468612 NBPF8Q3BBV2 869 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms