RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 SOS2Q07890 1332 aaPredicted RBP31.31■■■□□ 2.6
COL9A3-207ENST00000467819 PIK3C2GO75747 1445 aa31.31■■■□□ 2.6
COL9A3-207ENST00000467819 TECPR2O15040 1411 aa31.3■■■□□ 2.6
COL9A3-207ENST00000467819 LRPPRCP42704 1394 aaKnown RBP31.3■■■□□ 2.6
COL9A3-207ENST00000467819 TMEM132EQ6IEE7 984 aa31.29■■■□□ 2.6
COL9A3-207ENST00000467819 WAPLQ7Z5K2 1190 aa31.29■■■□□ 2.6
COL9A3-207ENST00000467819 ADAMTS2O95450 1211 aa31.28■■■□□ 2.6
COL9A3-207ENST00000467819 ESCO1Q5FWF5 840 aa31.27■■■□□ 2.6
COL9A3-207ENST00000467819 CDK12Q9NYV4 1490 aaPredicted RBP31.26■■■□□ 2.59
COL9A3-207ENST00000467819 ACIN1Q9UKV3 1341 aaKnown RBP31.24■■■□□ 2.59
COL9A3-207ENST00000467819 COL22A1Q8NFW1 1626 aaPredicted RBP31.24■■■□□ 2.59
COL9A3-207ENST00000467819 ABCC11Q96J66 1382 aa31.24■■■□□ 2.59
COL9A3-207ENST00000467819 PLEKHH1Q9ULM0 1364 aa31.24■■■□□ 2.59
COL9A3-207ENST00000467819 NUTM2FA1L443 756 aa31.23■■■□□ 2.59
COL9A3-207ENST00000467819 FMN2Q9NZ56 1722 aa31.23■■■□□ 2.59
COL9A3-207ENST00000467819 YTHDC2Q9H6S0 1430 aaKnown RBP31.23■■■□□ 2.59
COL9A3-207ENST00000467819 NGLY1Q96IV0 654 aa31.22■■■□□ 2.59
COL9A3-207ENST00000467819 QTRT2Q9H974 415 aaKnown RBP31.22■■■□□ 2.59
COL9A3-207ENST00000467819 NPHP3Q7Z494 1330 aa31.22■■■□□ 2.59
COL9A3-207ENST00000467819 PXDNQ92626 1479 aa31.21■■■□□ 2.59
COL9A3-207ENST00000467819 RAB3GAP2Q9H2M9 1393 aa31.2■■■□□ 2.59
COL9A3-207ENST00000467819 UPF1Q92900 1129 aaKnown RBP eCLIP31.2■■■□□ 2.597e-13■□□□□ 10.1
COL9A3-207ENST00000467819 XPCQ01831 940 aaPredicted RBP31.18■■■□□ 2.58
COL9A3-207ENST00000467819 RGS12O14924 1447 aa31.17■■■□□ 2.58
COL9A3-207ENST00000467819 MYOM2P54296 1465 aa31.17■■■□□ 2.58
COL9A3-207ENST00000467819 FOXO3O43524 673 aa31.17■■■□□ 2.58
COL9A3-207ENST00000467819 NRXN1Q9ULB1 1477 aa31.16■■■□□ 2.58
COL9A3-207ENST00000467819 MARF1Q9Y4F3 1742 aaKnown RBP31.16■■■□□ 2.58
COL9A3-207ENST00000467819 RGPD8O14715 1765 aaPredicted RBP31.16■■■□□ 2.58
COL9A3-207ENST00000467819 RBM6P78332 1123 aaKnown RBP31.16■■■□□ 2.58
COL9A3-207ENST00000467819 KIF1AQ12756 1690 aa31.15■■■□□ 2.58
COL9A3-207ENST00000467819 C14orf93Q9H972 538 aaKnown RBP31.14■■■□□ 2.58
COL9A3-207ENST00000467819 CFAP70Q5T0N1 1121 aa31.13■■■□□ 2.57
COL9A3-207ENST00000467819 DHX57Q6P158 1386 aaKnown RBP31.11■■■□□ 2.57
COL9A3-207ENST00000467819 USP21Q9UK80 565 aa31.11■■■□□ 2.57
COL9A3-207ENST00000467819 SIRT1Q96EB6 747 aa31.07■■■□□ 2.56
COL9A3-207ENST00000467819 SAFB2Q14151 953 aaKnown RBP eCLIP31.05■■■□□ 2.56
COL9A3-207ENST00000467819 FNBP4Q8N3X1 1017 aaPredicted RBP31.05■■■□□ 2.56
COL9A3-207ENST00000467819 TRPC5Q9UL62 973 aaPredicted RBP31.05■■■□□ 2.56
COL9A3-207ENST00000467819 ATRNO75882 1429 aa31.02■■■□□ 2.56
COL9A3-207ENST00000467819 PRAM1Q96QH2 718 aa31.02■■■□□ 2.56
COL9A3-207ENST00000467819 DLC1Q96QB1 1528 aa31■■■□□ 2.55
COL9A3-207ENST00000467819 SPATA31A3Q5VYP0 1347 aa30.99■■■□□ 2.55
COL9A3-207ENST00000467819 KRT28Q7Z3Y7 464 aa30.99■■■□□ 2.55
COL9A3-207ENST00000467819 ADGRB1O14514 1584 aa30.98■■■□□ 2.55
COL9A3-207ENST00000467819 PHF8Q9UPP1 1060 aa30.98■■■□□ 2.55
COL9A3-207ENST00000467819 POGKQ9P215 609 aa30.97■■■□□ 2.55
COL9A3-207ENST00000467819 BCL9LQ86UU0 1499 aa30.96■■■□□ 2.55
COL9A3-207ENST00000467819 USP32Q8NFA0 1604 aa30.96■■■□□ 2.55
COL9A3-207ENST00000467819 KDM2AQ9Y2K7 1162 aa30.96■■■□□ 2.55
COL9A3-207ENST00000467819 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.95■■■□□ 2.55
COL9A3-207ENST00000467819 ADGRB2O60241 1585 aa30.95■■■□□ 2.54
COL9A3-207ENST00000467819 TNS3Q68CZ2 1445 aa30.93■■■□□ 2.54
COL9A3-207ENST00000467819 DCAF11Q8TEB1 546 aa30.93■■■□□ 2.54
COL9A3-207ENST00000467819 TRAK1Q9UPV9 953 aa30.92■■■□□ 2.54
COL9A3-207ENST00000467819 ATAD2Q6PL18 1390 aa30.92■■■□□ 2.54
COL9A3-207ENST00000467819 ABCA3Q99758 1704 aa30.91■■■□□ 2.54
COL9A3-207ENST00000467819 PSME1Q06323 249 aa30.9■■■□□ 2.54
COL9A3-207ENST00000467819 PLEKHG5O94827 1062 aa30.89■■■□□ 2.54
COL9A3-207ENST00000467819 ANKARQ7Z5J8 1434 aa30.89■■■□□ 2.53
COL9A3-207ENST00000467819 HIRIP3Q9BW71 556 aaPredicted RBP30.88■■■□□ 2.53
COL9A3-207ENST00000467819 HAP1P54257 671 aaPredicted RBP30.87■■■□□ 2.53
COL9A3-207ENST00000467819 PMFBP1Q8TBY8 1022 aa30.87■■■□□ 2.53
COL9A3-207ENST00000467819 SLIT2O94813 1529 aa30.87■■■□□ 2.53
COL9A3-207ENST00000467819 LMOD2Q6P5Q4 547 aa30.86■■■□□ 2.53
COL9A3-207ENST00000467819 MINK1Q8N4C8 1332 aaPredicted RBP30.86■■■□□ 2.53
COL9A3-207ENST00000467819 PLCH1Q4KWH8 1693 aa30.85■■■□□ 2.53
COL9A3-207ENST00000467819 SBNO1A3KN83 1393 aa30.85■■■□□ 2.53
COL9A3-207ENST00000467819 CABLES1Q8TDN4 633 aa30.85■■■□□ 2.53
COL9A3-207ENST00000467819 GJD4Q96KN9 370 aaPredicted RBP30.85■■■□□ 2.53
COL9A3-207ENST00000467819 HRCP23327 699 aa30.84■■■□□ 2.53
COL9A3-207ENST00000467819 ARHGEF28Q8N1W1 1705 aaKnown RBP30.84■■■□□ 2.53
COL9A3-207ENST00000467819 GLI3P10071 1580 aa30.83■■■□□ 2.53
COL9A3-207ENST00000467819 UNC5CLQ8IV45 518 aa30.83■■■□□ 2.53
COL9A3-207ENST00000467819 TRPM3Q9HCF6 1732 aaPredicted RBP30.83■■■□□ 2.53
COL9A3-207ENST00000467819 EP400Q96L91 3159 aa30.83■■■□□ 2.53
COL9A3-207ENST00000467819 ARHGEF10O15013 1369 aa30.81■■■□□ 2.52
COL9A3-207ENST00000467819 TULP4Q9NRJ4 1543 aa30.81■■■□□ 2.52
COL9A3-207ENST00000467819 RALGAPBQ86X10 1494 aa30.81■■■□□ 2.52
COL9A3-207ENST00000467819 NWD2Q9ULI1 1742 aa30.81■■■□□ 2.52
COL9A3-207ENST00000467819 STAC3Q96MF2 364 aa30.79■■■□□ 2.52
COL9A3-207ENST00000467819 EIF3AQ14152 1382 aaKnown RBP30.79■■■□□ 2.52
COL9A3-207ENST00000467819 BRWD3Q6RI45 1802 aa30.78■■■□□ 2.52
COL9A3-207ENST00000467819 ALS2Q96Q42 1657 aa30.78■■■□□ 2.52
COL9A3-207ENST00000467819 PRR36Q9H6K5 1346 aa30.77■■■□□ 2.52
COL9A3-207ENST00000467819 WASLO00401 505 aaPredicted RBP30.75■■■□□ 2.51
COL9A3-207ENST00000467819 ITSN1Q15811 1721 aa30.75■■■□□ 2.51
COL9A3-207ENST00000467819 GPRASP1Q5JY77 1395 aa30.73■■■□□ 2.51
COL9A3-207ENST00000467819 CCDC9Q9Y3X0 531 aaKnown RBP30.69■■■□□ 2.5
COL9A3-207ENST00000467819 KIAA1210Q9ULL0 1709 aa30.69■■■□□ 2.5
COL9A3-207ENST00000467819 NRAPQ86VF7 1730 aa30.68■■■□□ 2.5
COL9A3-207ENST00000467819 VPS72Q15906 364 aa30.68■■■□□ 2.5
COL9A3-207ENST00000467819 NGDNQ8NEJ9 315 aaKnown RBP30.68■■■□□ 2.5
COL9A3-207ENST00000467819 CRYBG1Q9Y4K1 1723 aa30.67■■■□□ 2.5
COL9A3-207ENST00000467819 ATP7BP35670 1465 aa30.66■■■□□ 2.5
COL9A3-207ENST00000467819 FAM83GA6ND36 823 aa30.66■■■□□ 2.5
COL9A3-207ENST00000467819 COL14A1Q05707 1796 aaKnown RBP30.65■■■□□ 2.5
COL9A3-207ENST00000467819 PAK3O75914 559 aaPredicted RBP30.64■■■□□ 2.5
COL9A3-207ENST00000467819 CCDC125Q86Z20 511 aa30.63■■■□□ 2.49
COL9A3-207ENST00000467819 SEPT12Q8IYM1 358 aa30.63■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms