RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 PROSER2Q86WR7 435 aaPredicted RBP21.47■■□□□ 1.03
NPHP4-205ENST00000466897 PRAM1Q96QH2 718 aa21.47■■□□□ 1.03
NPHP4-205ENST00000466897 CENPJQ9HC77 1338 aaPredicted RBP21.47■■□□□ 1.03
NPHP4-205ENST00000466897 PLEKHH1Q9ULM0 1364 aa21.47■■□□□ 1.03
NPHP4-205ENST00000466897 DCCP43146 1447 aa21.46■■□□□ 1.03
NPHP4-205ENST00000466897 WAPLQ7Z5K2 1190 aa21.44■■□□□ 1.02
NPHP4-205ENST00000466897 POGKQ9P215 609 aa21.44■■□□□ 1.02
NPHP4-205ENST00000466897 EIF4G2P78344 907 aaKnown RBP eCLIP21.43■■□□□ 1.02
NPHP4-205ENST00000466897 FMN2Q9NZ56 1722 aa21.43■■□□□ 1.02
NPHP4-205ENST00000466897 SLC24A1O60721 1099 aa21.41■■□□□ 1.02
NPHP4-205ENST00000466897 MSH6P52701 1360 aa21.39■■□□□ 1.02
NPHP4-205ENST00000466897 ST20-MTHFSA0A0A6YYL1 179 aa21.39■■□□□ 1.01
NPHP4-205ENST00000466897 C19orf44Q9H6X5 657 aa21.39■■□□□ 1.01
NPHP4-205ENST00000466897 TULP4Q9NRJ4 1543 aa21.38■■□□□ 1.01
NPHP4-205ENST00000466897 TESK2Q96S53 571 aa21.37■■□□□ 1.01
NPHP4-205ENST00000466897 ITSN1Q15811 1721 aa21.36■■□□□ 1.01
NPHP4-205ENST00000466897 HSPA5P11021 654 aaKnown RBP21.35■■□□□ 1.01
NPHP4-205ENST00000466897 SAFB2Q14151 953 aaKnown RBP eCLIP21.35■■□□□ 1.01
NPHP4-205ENST00000466897 RBM33Q96EV2 1170 aaKnown RBP21.35■■□□□ 1.01
NPHP4-205ENST00000466897 MINK1Q8N4C8 1332 aaPredicted RBP21.34■■□□□ 1.01
NPHP4-205ENST00000466897 USP32Q8NFA0 1604 aa21.34■■□□□ 1.01
NPHP4-205ENST00000466897 C14orf37Q86TY3 774 aa21.34■■□□□ 1.01
NPHP4-205ENST00000466897 TOPAZ1Q8N9V7 1692 aa21.34■■□□□ 1.01
NPHP4-205ENST00000466897 RGPD8O14715 1765 aaPredicted RBP21.33■■□□□ 1.01
NPHP4-205ENST00000466897 CADPS2Q86UW7 1296 aa21.33■■□□□ 1.01
NPHP4-205ENST00000466897 ANKARQ7Z5J8 1434 aa21.32■■□□□ 1
NPHP4-205ENST00000466897 EVC2Q86UK5 1308 aa21.31■■□□□ 1
NPHP4-205ENST00000466897 WASLO00401 505 aaPredicted RBP21.31■■□□□ 1
NPHP4-205ENST00000466897 MST1RQ04912 1400 aa21.3■■□□□ 1
NPHP4-205ENST00000466897 PUS7Q96PZ0 661 aaKnown RBP21.3■■□□□ 1
NPHP4-205ENST00000466897 ATP7BP35670 1465 aa21.29■■□□□ 1
NPHP4-205ENST00000466897 ATF3P18847 181 aa21.29■■□□□ 1
NPHP4-205ENST00000466897 HIRIP3Q9BW71 556 aaPredicted RBP21.29■■□□□ 1
NPHP4-205ENST00000466897 TMF1P82094 1093 aa21.28■■□□□ 1
NPHP4-205ENST00000466897 KIF1AQ12756 1690 aa21.28■■□□□ 1
NPHP4-205ENST00000466897 DISP3Q9P2K9 1392 aa21.26■□□□□ 0.99
NPHP4-205ENST00000466897 CDK19Q9BWU1 502 aa21.26■□□□□ 0.99
NPHP4-205ENST00000466897 C1orf167Q5SNV9 1468 aa21.26■□□□□ 0.99
NPHP4-205ENST00000466897 ATAD2Q6PL18 1390 aa21.25■□□□□ 0.99
NPHP4-205ENST00000466897 CDCA8Q53HL2 280 aa21.25■□□□□ 0.99
NPHP4-205ENST00000466897 MYOM1P52179 1685 aa21.24■□□□□ 0.99
NPHP4-205ENST00000466897 TOM1O60784 492 aa21.22■□□□□ 0.99
NPHP4-205ENST00000466897 NINLQ9Y2I6 1382 aa21.22■□□□□ 0.99
NPHP4-205ENST00000466897 ROBO1Q9Y6N7 1651 aa21.21■□□□□ 0.99
NPHP4-205ENST00000466897 SRPK2P78362 688 aaKnown RBP21.21■□□□□ 0.99
NPHP4-205ENST00000466897 PRR36Q9H6K5 1346 aa21.21■□□□□ 0.99
NPHP4-205ENST00000466897 NHSL1Q5SYE7 1610 aa21.2■□□□□ 0.98
NPHP4-205ENST00000466897 SLAIN2Q9P270 581 aa21.2■□□□□ 0.98
NPHP4-205ENST00000466897 AKAP12Q02952 1782 aa21.2■□□□□ 0.98
NPHP4-205ENST00000466897 NUDT16Q96DE0 195 aaKnown RBP21.19■□□□□ 0.98
NPHP4-205ENST00000466897 CABP2Q9NPB3 220 aa21.18■□□□□ 0.98
NPHP4-205ENST00000466897 CCDC61Q9Y6R9 512 aa21.18■□□□□ 0.98
NPHP4-205ENST00000466897 PPIP5K1Q6PFW1 1433 aa21.16■□□□□ 0.98
NPHP4-205ENST00000466897 UBAP1LF5GYI3 381 aa21.16■□□□□ 0.98
NPHP4-205ENST00000466897 MON2Q7Z3U7 1717 aa21.15■□□□□ 0.98
NPHP4-205ENST00000466897 C11orf95C9JLR9 678 aaPredicted RBP21.15■□□□□ 0.98
NPHP4-205ENST00000466897 AHDC1Q5TGY3 1603 aaPredicted RBP21.15■□□□□ 0.98
NPHP4-205ENST00000466897 CCDC7Q96M83 1385 aa21.14■□□□□ 0.98
NPHP4-205ENST00000466897 KIF7Q2M1P5 1343 aa21.14■□□□□ 0.97
NPHP4-205ENST00000466897 PLEKHG3A1L390 1219 aa21.14■□□□□ 0.97
NPHP4-205ENST00000466897 POLR3AO14802 1390 aaPredicted RBP21.13■□□□□ 0.97
NPHP4-205ENST00000466897 NUTM2FA1L443 756 aa21.13■□□□□ 0.97
NPHP4-205ENST00000466897 ESCO1Q5FWF5 840 aa21.12■□□□□ 0.97
NPHP4-205ENST00000466897 BRINP3Q76B58 766 aa21.12■□□□□ 0.97
NPHP4-205ENST00000466897 WASHC2AQ641Q2 1341 aa21.11■□□□□ 0.97
NPHP4-205ENST00000466897 ORAI2Q96SN7 254 aa21.11■□□□□ 0.97
NPHP4-205ENST00000466897 PHF8Q9UPP1 1060 aa21.11■□□□□ 0.97
NPHP4-205ENST00000466897 CD163L1Q9NR16 1453 aa21.11■□□□□ 0.97
NPHP4-205ENST00000466897 NRKQ7Z2Y5 1582 aa21.1■□□□□ 0.97
NPHP4-205ENST00000466897 CPSF1Q10570 1443 aaKnown RBP21.1■□□□□ 0.97
NPHP4-205ENST00000466897 TRPM3Q9HCF6 1732 aaPredicted RBP21.09■□□□□ 0.97
NPHP4-205ENST00000466897 PHLPP1O60346 1717 aa21.08■□□□□ 0.97
NPHP4-205ENST00000466897 CABP1Q9NZU7 370 aa21.08■□□□□ 0.97
NPHP4-205ENST00000466897 BRD4O60885 1362 aaPredicted RBP21.08■□□□□ 0.96
NPHP4-205ENST00000466897 ANKRD36BQ8N2N9 1353 aa21.08■□□□□ 0.96
NPHP4-205ENST00000466897 PXDNQ92626 1479 aa21.07■□□□□ 0.96
NPHP4-205ENST00000466897 NPHP3Q7Z494 1330 aa21.06■□□□□ 0.96
NPHP4-205ENST00000466897 ACEP12821 1306 aa21.05■□□□□ 0.96
NPHP4-205ENST00000466897 COL16A1Q07092 1604 aaPredicted RBP21.05■□□□□ 0.96
NPHP4-205ENST00000466897 ZNF316A6NFI3 1004 aaPredicted RBP21.05■□□□□ 0.96
NPHP4-205ENST00000466897 SLC12A5Q9H2X9 1139 aa21.05■□□□□ 0.96
NPHP4-205ENST00000466897 USP6P35125 1406 aa21.04■□□□□ 0.96
NPHP4-205ENST00000466897 PMFBP1Q8TBY8 1022 aa21.04■□□□□ 0.96
NPHP4-205ENST00000466897 TMC1Q8TDI8 760 aa21.04■□□□□ 0.96
NPHP4-205ENST00000466897 ZNF692Q9BU19 519 aaPredicted RBP21.04■□□□□ 0.96
NPHP4-205ENST00000466897 TERF2IPQ9NYB0 399 aa21.04■□□□□ 0.96
NPHP4-205ENST00000466897 A0A1W2PP64 1363 aa21.04■□□□□ 0.96
NPHP4-205ENST00000466897 ALS2Q96Q42 1657 aa21.04■□□□□ 0.96
NPHP4-205ENST00000466897 NGDNQ8NEJ9 315 aaKnown RBP21.03■□□□□ 0.96
NPHP4-205ENST00000466897 PIP4K2BP78356 416 aa21.02■□□□□ 0.96
NPHP4-205ENST00000466897 SSH2Q76I76 1423 aa21.02■□□□□ 0.96
NPHP4-205ENST00000466897 SOS2Q07890 1332 aaPredicted RBP21.02■□□□□ 0.95
NPHP4-205ENST00000466897 FOXO3O43524 673 aa21.01■□□□□ 0.95
NPHP4-205ENST00000466897 HDGFL2Q7Z4V5 671 aaPredicted RBP21.01■□□□□ 0.95
NPHP4-205ENST00000466897 USP54Q70EL1 1684 aa21.01■□□□□ 0.95
NPHP4-205ENST00000466897 EDC4Q6P2E9 1401 aaKnown RBP21.01■□□□□ 0.95
NPHP4-205ENST00000466897 SBNO1A3KN83 1393 aa21■□□□□ 0.95
NPHP4-205ENST00000466897 KTN1Q86UP2 1357 aaKnown RBP21■□□□□ 0.95
NPHP4-205ENST00000466897 KIF20BQ96Q89 1820 aa21■□□□□ 0.95
NPHP4-205ENST00000466897 POLR3GLQ9BT43 218 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms