RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 DDX58O95786 925 aaKnown RBP10.65□□□□□ -0.7
HPS4-209ENST00000466781 CCAR2Q8N163 923 aaKnown RBP10.65□□□□□ -0.7
HPS4-209ENST00000466781 ADGRL1O94910 1474 aa10.65□□□□□ -0.71
HPS4-209ENST00000466781 ARHGEF11O15085 1522 aa10.64□□□□□ -0.71
HPS4-209ENST00000466781 USP47Q96K76 1375 aa10.64□□□□□ -0.71
HPS4-209ENST00000466781 ANO2Q9NQ90 1003 aa10.64□□□□□ -0.71
HPS4-209ENST00000466781 DDX11L8A8MPP1 907 aa10.64□□□□□ -0.71
HPS4-209ENST00000466781 ANKRD45Q5TZF3 282 aa10.64□□□□□ -0.71
HPS4-209ENST00000466781 SAMD1Q6SPF0 538 aaPredicted RBP10.64□□□□□ -0.71
HPS4-209ENST00000466781 NFXL1Q6ZNB6 911 aa10.64□□□□□ -0.71
HPS4-209ENST00000466781 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.64□□□□□ -0.712e-6■■■■■ 76
HPS4-209ENST00000466781 NUTM2BA6NNL0 878 aaPredicted RBP10.64□□□□□ -0.71
HPS4-209ENST00000466781 NUTM2EB1AL46 878 aaPredicted RBP10.64□□□□□ -0.71
HPS4-209ENST00000466781 ELL2O00472 640 aaPredicted RBP10.64□□□□□ -0.71
HPS4-209ENST00000466781 NUTM2AQ8IVF1 878 aaPredicted RBP10.64□□□□□ -0.71
HPS4-209ENST00000466781 HOOK1Q9UJC3 728 aaKnown RBP10.64□□□□□ -0.71
HPS4-209ENST00000466781 IFIT2P09913 472 aaKnown RBP10.64□□□□□ -0.71
HPS4-209ENST00000466781 TRDNQ13061 729 aa10.64□□□□□ -0.71
HPS4-209ENST00000466781 NLRP13Q86W25 1043 aa10.64□□□□□ -0.71
HPS4-209ENST00000466781 AKNAQ7Z591 1439 aa10.63□□□□□ -0.71
HPS4-209ENST00000466781 PDE3BQ13370 1112 aa10.63□□□□□ -0.71
HPS4-209ENST00000466781 NECTIN2Q92692 538 aa10.63□□□□□ -0.71
HPS4-209ENST00000466781 IPO7O95373 1038 aaKnown RBP10.63□□□□□ -0.71
HPS4-209ENST00000466781 SF3B2Q13435 895 aaKnown RBP10.63□□□□□ -0.71
HPS4-209ENST00000466781 WASHC2AQ641Q2 1341 aa10.63□□□□□ -0.71
HPS4-209ENST00000466781 CPLX1O14810 134 aa10.62□□□□□ -0.71
HPS4-209ENST00000466781 PLB1Q6P1J6 1458 aa10.62□□□□□ -0.71
HPS4-209ENST00000466781 TIAM1Q13009 1591 aa10.62□□□□□ -0.71
HPS4-209ENST00000466781 TMEM132EQ6IEE7 984 aa10.62□□□□□ -0.71
HPS4-209ENST00000466781 TEX14Q8IWB6 1497 aa10.62□□□□□ -0.71
HPS4-209ENST00000466781 GPS2Q13227 327 aa10.62□□□□□ -0.71
HPS4-209ENST00000466781 PCF11O94913 1555 aaKnown RBP10.61□□□□□ -0.71
HPS4-209ENST00000466781 CABP2Q9NPB3 220 aa10.61□□□□□ -0.71
HPS4-209ENST00000466781 R3HCC1Q9Y3T6 440 aaKnown RBP10.61□□□□□ -0.71
HPS4-209ENST00000466781 PATL2C9JE40 543 aaKnown RBP10.61□□□□□ -0.71
HPS4-209ENST00000466781 RAPGEF4Q8WZA2 1011 aa10.61□□□□□ -0.71
HPS4-209ENST00000466781 RBM19Q9Y4C8 960 aaKnown RBP10.61□□□□□ -0.71
HPS4-209ENST00000466781 ZKSCAN1P17029 563 aaPredicted RBP10.61□□□□□ -0.71
HPS4-209ENST00000466781 DAPK1P53355 1430 aa10.61□□□□□ -0.71
HPS4-209ENST00000466781 ROCK1Q13464 1354 aa10.61□□□□□ -0.71
HPS4-209ENST00000466781 SLC52A1Q9NWF4 448 aa10.61□□□□□ -0.71
HPS4-209ENST00000466781 BCL2L13Q9BXK5 485 aa10.6□□□□□ -0.71
HPS4-209ENST00000466781 ZKSCAN2Q63HK3 967 aa10.6□□□□□ -0.71
HPS4-209ENST00000466781 DENND4BO75064 1496 aaPredicted RBP10.6□□□□□ -0.71
HPS4-209ENST00000466781 CCDC141Q6ZP82 1450 aa10.6□□□□□ -0.71
HPS4-209ENST00000466781 G3BP1Q13283 466 aaKnown RBP eCLIP10.6□□□□□ -0.71
HPS4-209ENST00000466781 ODF2Q5BJF6 829 aa10.6□□□□□ -0.71
HPS4-209ENST00000466781 NLRP2Q9NX02 1062 aa10.6□□□□□ -0.71
HPS4-209ENST00000466781 MYBBP1AQ9BQG0 1328 aaKnown RBP10.6□□□□□ -0.71
HPS4-209ENST00000466781 DIAPH1O60610 1272 aaKnown RBP10.6□□□□□ -0.71
HPS4-209ENST00000466781 CT47A1Q5JQC4 288 aaPredicted RBP10.6□□□□□ -0.71
HPS4-209ENST00000466781 ABTB2Q8N961 1025 aa10.59□□□□□ -0.71
HPS4-209ENST00000466781 SMG6Q86US8 1419 aaKnown RBP10.59□□□□□ -0.71
HPS4-209ENST00000466781 FOXD4L6Q3SYB3 417 aaPredicted RBP10.59□□□□□ -0.71
HPS4-209ENST00000466781 FOXD4L3Q6VB84 417 aaPredicted RBP10.59□□□□□ -0.71
HPS4-209ENST00000466781 ERBINQ96RT1 1412 aa10.59□□□□□ -0.71
HPS4-209ENST00000466781 RNF20Q5VTR2 975 aa10.59□□□□□ -0.71
HPS4-209ENST00000466781 FYB1O15117 783 aa10.58□□□□□ -0.72
HPS4-209ENST00000466781 CCDC27Q2M243 656 aa10.58□□□□□ -0.72
HPS4-209ENST00000466781 CAMSAP2Q08AD1 1489 aa10.58□□□□□ -0.72
HPS4-209ENST00000466781 NLRP6P59044 892 aa10.58□□□□□ -0.72
HPS4-209ENST00000466781 WWC2Q6AWC2 1192 aa10.58□□□□□ -0.72
HPS4-209ENST00000466781 E9PSI1 815 aa10.57□□□□□ -0.72
HPS4-209ENST00000466781 PRAM1Q96QH2 718 aa10.57□□□□□ -0.72
HPS4-209ENST00000466781 HFM1A2PYH4 1435 aa10.57□□□□□ -0.72
HPS4-209ENST00000466781 STRN4Q9NRL3 753 aa10.57□□□□□ -0.72
HPS4-209ENST00000466781 DMRT2Q9Y5R5 561 aa10.57□□□□□ -0.72
HPS4-209ENST00000466781 SAFBQ15424 915 aaKnown RBP eCLIP10.57□□□□□ -0.72
HPS4-209ENST00000466781 PLIN1O60240 522 aa10.57□□□□□ -0.72
HPS4-209ENST00000466781 BRMS1Q9HCU9 246 aa10.57□□□□□ -0.72
HPS4-209ENST00000466781 FANCAO15360 1455 aa10.57□□□□□ -0.72
HPS4-209ENST00000466781 TMEM132AQ24JP5 1023 aa10.56□□□□□ -0.72
HPS4-209ENST00000466781 CENPQQ7L2Z9 268 aaPredicted RBP10.56□□□□□ -0.72
HPS4-209ENST00000466781 RPGRIP1LQ68CZ1 1315 aa10.56□□□□□ -0.72
HPS4-209ENST00000466781 EPS15P42566 896 aa10.56□□□□□ -0.72
HPS4-209ENST00000466781 SKOR2Q2VWA4 1001 aaPredicted RBP10.56□□□□□ -0.72
HPS4-209ENST00000466781 CCAR1Q8IX12 1150 aaKnown RBP10.56□□□□□ -0.72
HPS4-209ENST00000466781 DDX49Q9Y6V7 483 aaKnown RBP10.56□□□□□ -0.72
HPS4-209ENST00000466781 REC8O95072 547 aa10.56□□□□□ -0.72
HPS4-209ENST00000466781 IKQ13123 557 aaPredicted RBP10.56□□□□□ -0.72
HPS4-209ENST00000466781 IPO9Q96P70 1041 aaKnown RBP10.56□□□□□ -0.72
HPS4-209ENST00000466781 NAP1L1P55209 391 aaKnown RBP10.56□□□□□ -0.72
HPS4-209ENST00000466781 BICD2Q8TD16 824 aa10.56□□□□□ -0.72
HPS4-209ENST00000466781 RAPGEF6Q8TEU7 1601 aa10.56□□□□□ -0.72
HPS4-209ENST00000466781 HMOX1P09601 288 aa10.55□□□□□ -0.72
HPS4-209ENST00000466781 RIC3Q7Z5B4 369 aa10.55□□□□□ -0.72
HPS4-209ENST00000466781 CTTNBP2Q8WZ74 1663 aa10.55□□□□□ -0.72
HPS4-209ENST00000466781 ZNF592Q92610 1267 aa10.55□□□□□ -0.72
HPS4-209ENST00000466781 FKBP5Q13451 457 aaPredicted RBP10.55□□□□□ -0.72
HPS4-209ENST00000466781 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.55□□□□□ -0.72
HPS4-209ENST00000466781 API5Q9BZZ5 524 aaKnown RBP10.55□□□□□ -0.72
HPS4-209ENST00000466781 EIF4G3O43432 1585 aaKnown RBP10.54□□□□□ -0.72
HPS4-209ENST00000466781 CFAP70Q5T0N1 1121 aa10.54□□□□□ -0.72
HPS4-209ENST00000466781 PTPN23Q9H3S7 1636 aa10.54□□□□□ -0.72
HPS4-209ENST00000466781 HSP90AB4PQ58FF6 505 aa10.54□□□□□ -0.72
HPS4-209ENST00000466781 RRP12Q5JTH9 1297 aaKnown RBP10.54□□□□□ -0.72
HPS4-209ENST00000466781 SLC26A8Q96RN1 970 aa10.54□□□□□ -0.72
HPS4-209ENST00000466781 TSPYL4Q9UJ04 414 aa10.54□□□□□ -0.72
HPS4-209ENST00000466781 ERC2O15083 957 aa10.54□□□□□ -0.72
HPS4-209ENST00000466781 CDK19Q9BWU1 502 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms