RNA–Protein interactions for RNA: ENST00000466732.2

VPS13D-203, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 377 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-203ENST00000466732 DDRGK1Q96HY6 314 aa9.09□□□□□ -0.95
VPS13D-203ENST00000466732 SPTLC1O15269 473 aa9.08□□□□□ -0.96
VPS13D-203ENST00000466732 GJA5P36382 358 aa9.08□□□□□ -0.96
VPS13D-203ENST00000466732 RIC3Q7Z5B4 369 aa9.08□□□□□ -0.96
VPS13D-203ENST00000466732 SYMPKQ92797 1274 aaKnown RBP9.08□□□□□ -0.96
VPS13D-203ENST00000466732 PLEKHG3A1L390 1219 aa9.07□□□□□ -0.96
VPS13D-203ENST00000466732 RNF223E7ERA6 249 aa9.07□□□□□ -0.96
VPS13D-203ENST00000466732 MSS51Q4VC12 460 aa9.07□□□□□ -0.96
VPS13D-203ENST00000466732 USB1Q9BQ65 265 aaKnown RBP9.07□□□□□ -0.96
VPS13D-203ENST00000466732 PPEF1O14829 653 aaPredicted RBP9.06□□□□□ -0.96
VPS13D-203ENST00000466732 RGS20O76081 388 aa9.06□□□□□ -0.96
VPS13D-203ENST00000466732 RSPH6AQ9H0K4 717 aa9.06□□□□□ -0.96
VPS13D-203ENST00000466732 PRDM9Q9NQV7 894 aa9.06□□□□□ -0.96
VPS13D-203ENST00000466732 C6orf229H3BNL8 230 aa9.05□□□□□ -0.96
VPS13D-203ENST00000466732 LIMD1Q9UGP4 676 aa9.05□□□□□ -0.96
VPS13D-203ENST00000466732 PCDHB15Q9Y5E8 787 aa9.05□□□□□ -0.96
VPS13D-203ENST00000466732 RETREG3Q86VR2 466 aa9.04□□□□□ -0.96
VPS13D-203ENST00000466732 CLK2P49760 499 aaKnown RBP9.03□□□□□ -0.96
VPS13D-203ENST00000466732 MTMR2Q13614 643 aa9.03□□□□□ -0.96
VPS13D-203ENST00000466732 CSPP1Q1MSJ5 1256 aa9.03□□□□□ -0.96
VPS13D-203ENST00000466732 ANKLE1Q8NAG6 615 aa9.03□□□□□ -0.96
VPS13D-203ENST00000466732 POLR3EQ9NVU0 708 aa9.03□□□□□ -0.96
VPS13D-203ENST00000466732 MMP16P51512 607 aa9.02□□□□□ -0.97
VPS13D-203ENST00000466732 TUSC1Q2TAM9 212 aa9.02□□□□□ -0.97
VPS13D-203ENST00000466732 SH3D19Q5HYK7 790 aa9.02□□□□□ -0.97
VPS13D-203ENST00000466732 IL27Q8NEV9 243 aa9.02□□□□□ -0.97
VPS13D-203ENST00000466732 HRCP23327 699 aa9.01□□□□□ -0.97
VPS13D-203ENST00000466732 SKIV2LQ15477 1246 aaKnown RBP9.01□□□□□ -0.97
VPS13D-203ENST00000466732 ZBTB3Q9H5J0 574 aa9.01□□□□□ -0.97
VPS13D-203ENST00000466732 SPDYE5A6NIY4 337 aa9□□□□□ -0.97
VPS13D-203ENST00000466732 DXOO77932 396 aaKnown RBP9□□□□□ -0.97
VPS13D-203ENST00000466732 PRPF38BQ5VTL8 546 aaKnown RBP9□□□□□ -0.97
VPS13D-203ENST00000466732 CABLES1Q8TDN4 633 aa9□□□□□ -0.97
VPS13D-203ENST00000466732 PRKD2Q9BZL6 878 aa9□□□□□ -0.97
VPS13D-203ENST00000466732 FCF1Q9Y324 198 aaKnown RBP9□□□□□ -0.97
VPS13D-203ENST00000466732 JUNDP17535 347 aa8.99□□□□□ -0.97
VPS13D-203ENST00000466732 QPCTQ16769 361 aa8.99□□□□□ -0.97
VPS13D-203ENST00000466732 PLA2G2CQ5R387 149 aa8.99□□□□□ -0.97
VPS13D-203ENST00000466732 PRR7Q8TB68 274 aa8.99□□□□□ -0.97
VPS13D-203ENST00000466732 LILRB3O75022 631 aa8.98□□□□□ -0.97
VPS13D-203ENST00000466732 PROCA1Q8NCQ7 364 aaPredicted RBP8.98□□□□□ -0.97
VPS13D-203ENST00000466732 EMID1Q96A84 441 aaPredicted RBP8.98□□□□□ -0.97
VPS13D-203ENST00000466732 V9GY48 417 aaPredicted RBP8.97□□□□□ -0.97
VPS13D-203ENST00000466732 NUTM2BA6NNL0 878 aaPredicted RBP8.96□□□□□ -0.98
VPS13D-203ENST00000466732 NUTM2EB1AL46 878 aaPredicted RBP8.96□□□□□ -0.98
VPS13D-203ENST00000466732 CFAP99D6REC4 459 aa8.96□□□□□ -0.98
VPS13D-203ENST00000466732 NUTM2DQ5VT03 806 aaPredicted RBP8.96□□□□□ -0.98
VPS13D-203ENST00000466732 NUTM2AQ8IVF1 878 aaPredicted RBP8.96□□□□□ -0.98
VPS13D-203ENST00000466732 SLC19A1P41440 591 aa8.95□□□□□ -0.98
VPS13D-203ENST00000466732 RTL5Q5HYW3 569 aaPredicted RBP8.95□□□□□ -0.98
VPS13D-203ENST00000466732 LIAT1Q6ZQX7 453 aa8.95□□□□□ -0.98
VPS13D-203ENST00000466732 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.95□□□□□ -0.98
VPS13D-203ENST00000466732 GOPCQ9HD26 462 aa8.95□□□□□ -0.98
VPS13D-203ENST00000466732 DESI1Q6ICB0 168 aa8.94□□□□□ -0.98
VPS13D-203ENST00000466732 ATP1B4Q9UN42 357 aaPredicted RBP8.94□□□□□ -0.98
VPS13D-203ENST00000466732 FBXO31Q5XUX0 539 aaPredicted RBP8.93□□□□□ -0.98
VPS13D-203ENST00000466732 CCDC24Q8N4L8 307 aa8.93□□□□□ -0.98
VPS13D-203ENST00000466732 NUDT12Q9BQG2 462 aa8.93□□□□□ -0.98
VPS13D-203ENST00000466732 PCMTD1Q96MG8 357 aaPredicted RBP8.92□□□□□ -0.98
VPS13D-203ENST00000466732 RPIAP49247 311 aa8.91□□□□□ -0.98
VPS13D-203ENST00000466732 PTPRNQ16849 979 aa8.91□□□□□ -0.98
VPS13D-203ENST00000466732 SPRYD7Q5W111 196 aa8.91□□□□□ -0.98
VPS13D-203ENST00000466732 TSC1Q92574 1164 aa8.91□□□□□ -0.98
VPS13D-203ENST00000466732 CCNYL3P0C7X3 344 aa8.9□□□□□ -0.98
VPS13D-203ENST00000466732 PPP2R2DQ66LE6 453 aa8.9□□□□□ -0.98
VPS13D-203ENST00000466732 LYPD8Q6UX82 237 aa8.9□□□□□ -0.98
VPS13D-203ENST00000466732 ZBTB24O43167 697 aaPredicted RBP8.89□□□□□ -0.99
VPS13D-203ENST00000466732 ZNF598Q86UK7 904 aaKnown RBP8.89□□□□□ -0.99
VPS13D-203ENST00000466732 PTCRAQ6ISU1 281 aaPredicted RBP8.88□□□□□ -0.99
VPS13D-203ENST00000466732 HELBQ8NG08 1087 aaPredicted RBP8.88□□□□□ -0.99
VPS13D-203ENST00000466732 EVA1BQ9NVM1 165 aa8.88□□□□□ -0.99
VPS13D-203ENST00000466732 PER1O15534 1290 aaPredicted RBP8.87□□□□□ -0.99
VPS13D-203ENST00000466732 CD2BP2O95400 341 aaKnown RBP8.87□□□□□ -0.99
VPS13D-203ENST00000466732 ZNF697Q5TEC3 545 aa8.87□□□□□ -0.99
VPS13D-203ENST00000466732 KCNH2Q12809 1159 aa8.86□□□□□ -0.99
VPS13D-203ENST00000466732 CTDSPL2Q05D32 466 aa8.85□□□□□ -0.99
VPS13D-203ENST00000466732 TRIM32Q13049 653 aa8.85□□□□□ -0.99
VPS13D-203ENST00000466732 F12P00748 615 aaPredicted RBP8.84□□□□□ -0.99
VPS13D-203ENST00000466732 CTHP32929 405 aa8.84□□□□□ -0.99
VPS13D-203ENST00000466732 RFC5P40937 340 aa8.84□□□□□ -0.99
VPS13D-203ENST00000466732 IRX2Q9BZI1 471 aaPredicted RBP8.84□□□□□ -0.99
VPS13D-203ENST00000466732 UNC93B1Q9H1C4 597 aa8.84□□□□□ -0.99
VPS13D-203ENST00000466732 AP1G2O75843 785 aa8.83□□□□□ -1
VPS13D-203ENST00000466732 TRIM67Q6ZTA4 783 aa8.83□□□□□ -1
VPS13D-203ENST00000466732 MAP10Q9P2G4 905 aa8.83□□□□□ -1
VPS13D-203ENST00000466732 GDF9O60383 454 aa8.81□□□□□ -1
VPS13D-203ENST00000466732 PKD2L1Q9P0L9 805 aa8.81□□□□□ -1
VPS13D-203ENST00000466732 PDZRN3Q9UPQ7 1066 aa8.81□□□□□ -1
VPS13D-203ENST00000466732 GFRA3O60609 400 aa8.8□□□□□ -1
VPS13D-203ENST00000466732 SKOR1P84550 965 aa8.8□□□□□ -1
VPS13D-203ENST00000466732 FOXC1Q12948 553 aa8.8□□□□□ -1
VPS13D-203ENST00000466732 LRRN4Q8WUT4 740 aa8.8□□□□□ -1
VPS13D-203ENST00000466732 TNFRSF10AO00220 468 aa8.79□□□□□ -1
VPS13D-203ENST00000466732 USP17L8P0C7I0 530 aa8.79□□□□□ -1
VPS13D-203ENST00000466732 WNT7BP56706 349 aa8.79□□□□□ -1
VPS13D-203ENST00000466732 PRR20EP86478 221 aa8.79□□□□□ -1
VPS13D-203ENST00000466732 PRR20CP86479 221 aa8.79□□□□□ -1
VPS13D-203ENST00000466732 PRR20DP86480 221 aa8.79□□□□□ -1
VPS13D-203ENST00000466732 PRR20BP86481 221 aa8.79□□□□□ -1
VPS13D-203ENST00000466732 PRR20AP86496 221 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms