RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 SOS2Q07890 1332 aaPredicted RBP30.88■■■□□ 2.53
COL6A1-203ENST00000466285 C8orf37Q96NL8 207 aa30.87■■■□□ 2.53
COL6A1-203ENST00000466285 RGS12O14924 1447 aa30.87■■■□□ 2.53
COL6A1-203ENST00000466285 PXDNQ92626 1479 aa30.86■■■□□ 2.53
COL6A1-203ENST00000466285 FMN2Q9NZ56 1722 aa30.86■■■□□ 2.53
COL6A1-203ENST00000466285 CDK12Q9NYV4 1490 aaPredicted RBP30.84■■■□□ 2.53
COL6A1-203ENST00000466285 STK26Q9P289 416 aa30.84■■■□□ 2.53
COL6A1-203ENST00000466285 LRPPRCP42704 1394 aaKnown RBP30.83■■■□□ 2.53
COL6A1-203ENST00000466285 TMEM132EQ6IEE7 984 aa30.83■■■□□ 2.53
COL6A1-203ENST00000466285 WAPLQ7Z5K2 1190 aa30.83■■■□□ 2.53
COL6A1-203ENST00000466285 ADAMTS2O95450 1211 aa30.82■■■□□ 2.52
COL6A1-203ENST00000466285 RXRBP28702 533 aa30.82■■■□□ 2.52
COL6A1-203ENST00000466285 ANKRD30BQ9BXX2 1392 aa30.81■■■□□ 2.52
COL6A1-203ENST00000466285 UPF1Q92900 1129 aaKnown RBP eCLIP30.81■■■□□ 2.52
COL6A1-203ENST00000466285 RGPD8O14715 1765 aaPredicted RBP30.8■■■□□ 2.52
COL6A1-203ENST00000466285 MARF1Q9Y4F3 1742 aaKnown RBP30.79■■■□□ 2.52
COL6A1-203ENST00000466285 MYOM2P54296 1465 aa30.79■■■□□ 2.52
COL6A1-203ENST00000466285 NRXN1Q9ULB1 1477 aa30.78■■■□□ 2.52
COL6A1-203ENST00000466285 NUTM2FA1L443 756 aa30.78■■■□□ 2.52
COL6A1-203ENST00000466285 XPCQ01831 940 aaPredicted RBP30.78■■■□□ 2.52
COL6A1-203ENST00000466285 YTHDC2Q9H6S0 1430 aaKnown RBP30.77■■■□□ 2.52
COL6A1-203ENST00000466285 ABCC11Q96J66 1382 aa30.75■■■□□ 2.51
COL6A1-203ENST00000466285 ESCO1Q5FWF5 840 aa30.74■■■□□ 2.51
COL6A1-203ENST00000466285 RAB3GAP2Q9H2M9 1393 aa30.73■■■□□ 2.51
COL6A1-203ENST00000466285 QTRT2Q9H974 415 aaKnown RBP30.71■■■□□ 2.51
COL6A1-203ENST00000466285 KIF1AQ12756 1690 aa30.71■■■□□ 2.51
COL6A1-203ENST00000466285 NGLY1Q96IV0 654 aa30.69■■■□□ 2.5
COL6A1-203ENST00000466285 FOXO3O43524 673 aa30.68■■■□□ 2.5
COL6A1-203ENST00000466285 NPHP3Q7Z494 1330 aa30.68■■■□□ 2.5
COL6A1-203ENST00000466285 USP32Q8NFA0 1604 aa30.66■■■□□ 2.5
COL6A1-203ENST00000466285 RBM6P78332 1123 aaKnown RBP30.66■■■□□ 2.5
COL6A1-203ENST00000466285 CFAP70Q5T0N1 1121 aa30.65■■■□□ 2.5
COL6A1-203ENST00000466285 ATRNO75882 1429 aa30.64■■■□□ 2.5
COL6A1-203ENST00000466285 ADGRB1O14514 1584 aa30.64■■■□□ 2.5
COL6A1-203ENST00000466285 ABCA3Q99758 1704 aa30.64■■■□□ 2.5
COL6A1-203ENST00000466285 C14orf93Q9H972 538 aaKnown RBP30.63■■■□□ 2.49
COL6A1-203ENST00000466285 USP21Q9UK80 565 aa30.62■■■□□ 2.49
COL6A1-203ENST00000466285 BCL9LQ86UU0 1499 aa30.62■■■□□ 2.49
COL6A1-203ENST00000466285 FNBP4Q8N3X1 1017 aaPredicted RBP30.6■■■□□ 2.49
COL6A1-203ENST00000466285 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.6■■■□□ 2.49
COL6A1-203ENST00000466285 EP400Q96L91 3159 aa30.57■■■□□ 2.48
COL6A1-203ENST00000466285 SAFB2Q14151 953 aaKnown RBP eCLIP30.57■■■□□ 2.48
COL6A1-203ENST00000466285 ADGRB2O60241 1585 aa30.57■■■□□ 2.48
COL6A1-203ENST00000466285 DLC1Q96QB1 1528 aa30.57■■■□□ 2.48
COL6A1-203ENST00000466285 GLI3P10071 1580 aa30.54■■■□□ 2.48
COL6A1-203ENST00000466285 SPATA31A3Q5VYP0 1347 aa30.53■■■□□ 2.48
COL6A1-203ENST00000466285 PLCH1Q4KWH8 1693 aa30.53■■■□□ 2.48
COL6A1-203ENST00000466285 PRAM1Q96QH2 718 aa30.53■■■□□ 2.48
COL6A1-203ENST00000466285 TRPC5Q9UL62 973 aaPredicted RBP30.52■■■□□ 2.48
COL6A1-203ENST00000466285 DHX57Q6P158 1386 aaKnown RBP30.52■■■□□ 2.48
COL6A1-203ENST00000466285 TRPM3Q9HCF6 1732 aaPredicted RBP30.5■■■□□ 2.47
COL6A1-203ENST00000466285 TNS3Q68CZ2 1445 aa30.5■■■□□ 2.47
COL6A1-203ENST00000466285 SLIT2O94813 1529 aa30.5■■■□□ 2.47
COL6A1-203ENST00000466285 SIRT1Q96EB6 747 aa30.49■■■□□ 2.47
COL6A1-203ENST00000466285 ARHGEF28Q8N1W1 1705 aaKnown RBP30.47■■■□□ 2.47
COL6A1-203ENST00000466285 KRT28Q7Z3Y7 464 aa30.47■■■□□ 2.47
COL6A1-203ENST00000466285 BRWD3Q6RI45 1802 aa30.47■■■□□ 2.47
COL6A1-203ENST00000466285 PHF8Q9UPP1 1060 aa30.46■■■□□ 2.47
COL6A1-203ENST00000466285 ATAD2Q6PL18 1390 aa30.44■■■□□ 2.46
COL6A1-203ENST00000466285 PLEKHG5O94827 1062 aa30.44■■■□□ 2.46
COL6A1-203ENST00000466285 CABLES1Q8TDN4 633 aa30.44■■■□□ 2.46
COL6A1-203ENST00000466285 RALGAPBQ86X10 1494 aa30.44■■■□□ 2.46
COL6A1-203ENST00000466285 ALS2Q96Q42 1657 aa30.43■■■□□ 2.46
COL6A1-203ENST00000466285 HIRIP3Q9BW71 556 aaPredicted RBP30.42■■■□□ 2.46
COL6A1-203ENST00000466285 CRYBG1Q9Y4K1 1723 aa30.42■■■□□ 2.46
COL6A1-203ENST00000466285 TRAK1Q9UPV9 953 aa30.41■■■□□ 2.46
COL6A1-203ENST00000466285 PRR36Q9H6K5 1346 aa30.41■■■□□ 2.46
COL6A1-203ENST00000466285 ANKARQ7Z5J8 1434 aa30.4■■■□□ 2.46
COL6A1-203ENST00000466285 ACIN1Q9UKV3 1341 aaKnown RBP30.4■■■□□ 2.46
COL6A1-203ENST00000466285 NRAPQ86VF7 1730 aa30.39■■■□□ 2.46
COL6A1-203ENST00000466285 NWD2Q9ULI1 1742 aa30.39■■■□□ 2.46
COL6A1-203ENST00000466285 PMFBP1Q8TBY8 1022 aa30.39■■■□□ 2.46
COL6A1-203ENST00000466285 KDM2AQ9Y2K7 1162 aa30.39■■■□□ 2.46
COL6A1-203ENST00000466285 TULP4Q9NRJ4 1543 aa30.38■■■□□ 2.45
COL6A1-203ENST00000466285 GJD4Q96KN9 370 aaPredicted RBP30.37■■■□□ 2.45
COL6A1-203ENST00000466285 POGKQ9P215 609 aa30.37■■■□□ 2.45
COL6A1-203ENST00000466285 MINK1Q8N4C8 1332 aaPredicted RBP30.37■■■□□ 2.45
COL6A1-203ENST00000466285 SBNO1A3KN83 1393 aa30.37■■■□□ 2.45
COL6A1-203ENST00000466285 DCAF11Q8TEB1 546 aa30.36■■■□□ 2.45
COL6A1-203ENST00000466285 UNC5CLQ8IV45 518 aa30.34■■■□□ 2.45
COL6A1-203ENST00000466285 SRCAPQ6ZRS2 3230 aa30.3■■■□□ 2.44
COL6A1-203ENST00000466285 LMOD2Q6P5Q4 547 aa30.3■■■□□ 2.44
COL6A1-203ENST00000466285 ATP7BP35670 1465 aa30.3■■■□□ 2.44
COL6A1-203ENST00000466285 ITSN1Q15811 1721 aa30.3■■■□□ 2.44
COL6A1-203ENST00000466285 ARHGEF10O15013 1369 aa30.28■■■□□ 2.44
COL6A1-203ENST00000466285 TOPAZ1Q8N9V7 1692 aa30.28■■■□□ 2.44
COL6A1-203ENST00000466285 PSME1Q06323 249 aa30.27■■■□□ 2.44
COL6A1-203ENST00000466285 HAP1P54257 671 aaPredicted RBP30.26■■■□□ 2.43
COL6A1-203ENST00000466285 COL14A1Q05707 1796 aaKnown RBP30.23■■■□□ 2.43
COL6A1-203ENST00000466285 PHRF1Q9P1Y6 1649 aaKnown RBP30.23■■■□□ 2.43
COL6A1-203ENST00000466285 KIAA1210Q9ULL0 1709 aa30.23■■■□□ 2.43
COL6A1-203ENST00000466285 WASLO00401 505 aaPredicted RBP30.23■■■□□ 2.43
COL6A1-203ENST00000466285 FAM83GA6ND36 823 aa30.21■■■□□ 2.43
COL6A1-203ENST00000466285 VPS72Q15906 364 aa30.2■■■□□ 2.43
COL6A1-203ENST00000466285 EIF3AQ14152 1382 aaKnown RBP30.18■■■□□ 2.42
COL6A1-203ENST00000466285 HRCP23327 699 aa30.18■■■□□ 2.42
COL6A1-203ENST00000466285 SEPT12Q8IYM1 358 aa30.17■■■□□ 2.42
COL6A1-203ENST00000466285 GPRASP1Q5JY77 1395 aa30.15■■■□□ 2.42
COL6A1-203ENST00000466285 BLMP54132 1417 aaPredicted RBP30.13■■■□□ 2.41
COL6A1-203ENST00000466285 CCDC9Q9Y3X0 531 aaKnown RBP30.13■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms