RNA–Protein interactions for RNA: ENST00000466222.6

CAPN3-209, Transcript of calpain 3, humanhuman

TSL 2

Gene CAPN3, Length 1,934 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-209ENST00000466222 PANK3Q9H999 370 aa25.55■■□□□ 1.68
CAPN3-209ENST00000466222 EVC2Q86UK5 1308 aa25.55■■□□□ 1.68
CAPN3-209ENST00000466222 RBM33Q96EV2 1170 aaKnown RBP25.55■■□□□ 1.68
CAPN3-209ENST00000466222 QRICH2Q9H0J4 1663 aa25.55■■□□□ 1.68
CAPN3-209ENST00000466222 SIRT1Q96EB6 747 aa25.54■■□□□ 1.68
CAPN3-209ENST00000466222 TULP4Q9NRJ4 1543 aa25.54■■□□□ 1.68
CAPN3-209ENST00000466222 SRPK2P78362 688 aaKnown RBP25.53■■□□□ 1.68
CAPN3-209ENST00000466222 CDK19Q9BWU1 502 aa25.53■■□□□ 1.68
CAPN3-209ENST00000466222 FAM135BQ49AJ0 1406 aa25.52■■□□□ 1.68
CAPN3-209ENST00000466222 SLC12A5Q9H2X9 1139 aa25.51■■□□□ 1.67
CAPN3-209ENST00000466222 DIP2AQ14689 1571 aa25.5■■□□□ 1.67
CAPN3-209ENST00000466222 TMC1Q8TDI8 760 aa25.5■■□□□ 1.67
CAPN3-209ENST00000466222 POLR1AO95602 1720 aaPredicted RBP25.5■■□□□ 1.67
CAPN3-209ENST00000466222 ANP32CO43423 234 aa25.49■■□□□ 1.67
CAPN3-209ENST00000466222 CCER2I3L3R5 266 aa25.49■■□□□ 1.67
CAPN3-209ENST00000466222 PER1O15534 1290 aaPredicted RBP25.49■■□□□ 1.67
CAPN3-209ENST00000466222 CPS1P31327 1500 aa25.48■■□□□ 1.67
CAPN3-209ENST00000466222 PIK3R4Q99570 1358 aa25.48■■□□□ 1.67
CAPN3-209ENST00000466222 WASLO00401 505 aaPredicted RBP25.46■■□□□ 1.67
CAPN3-209ENST00000466222 NUTM2FA1L443 756 aa25.44■■□□□ 1.66
CAPN3-209ENST00000466222 PTCH1Q13635 1447 aa25.44■■□□□ 1.66
CAPN3-209ENST00000466222 CARD14Q9BXL6 1004 aa25.43■■□□□ 1.66
CAPN3-209ENST00000466222 SUPT16HQ9Y5B9 1047 aaKnown RBP25.43■■□□□ 1.66
CAPN3-209ENST00000466222 PRKRIP1Q9H875 184 aaPredicted RBP25.41■■□□□ 1.66
CAPN3-209ENST00000466222 KNDC1Q76NI1 1749 aa25.41■■□□□ 1.66
CAPN3-209ENST00000466222 PUS7Q96PZ0 661 aaKnown RBP25.41■■□□□ 1.66
CAPN3-209ENST00000466222 CABP1Q9NZU7 370 aa25.39■■□□□ 1.66
CAPN3-209ENST00000466222 XRN1Q8IZH2 1706 aaKnown RBP25.39■■□□□ 1.65
CAPN3-209ENST00000466222 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.37■■□□□ 1.65
CAPN3-209ENST00000466222 CC2D1BQ5T0F9 858 aaKnown RBP25.37■■□□□ 1.65
CAPN3-209ENST00000466222 PRR36Q9H6K5 1346 aa25.37■■□□□ 1.65
CAPN3-209ENST00000466222 NUDT16Q96DE0 195 aaKnown RBP25.36■■□□□ 1.65
CAPN3-209ENST00000466222 MYOM1P52179 1685 aa25.35■■□□□ 1.65
CAPN3-209ENST00000466222 ATAD2Q6PL18 1390 aa25.35■■□□□ 1.65
CAPN3-209ENST00000466222 KNSTRNQ9Y448 316 aa25.35■■□□□ 1.65
CAPN3-209ENST00000466222 PROSER2Q86WR7 435 aaPredicted RBP25.33■■□□□ 1.65
CAPN3-209ENST00000466222 AMER1Q5JTC6 1135 aaPredicted RBP25.32■■□□□ 1.64
CAPN3-209ENST00000466222 CCDC184Q52MB2 194 aa25.31■■□□□ 1.64
CAPN3-209ENST00000466222 STRCQ7RTU9 1775 aa25.31■■□□□ 1.64
CAPN3-209ENST00000466222 CHD2O14647 1828 aaKnown RBP25.3■■□□□ 1.64
CAPN3-209ENST00000466222 CCDC61Q9Y6R9 512 aa25.29■■□□□ 1.64
CAPN3-209ENST00000466222 A0A1W2PP64 1363 aa25.29■■□□□ 1.64
CAPN3-209ENST00000466222 C14orf37Q86TY3 774 aa25.29■■□□□ 1.64
CAPN3-209ENST00000466222 ZNF335Q9H4Z2 1342 aaPredicted RBP25.28■■□□□ 1.64
CAPN3-209ENST00000466222 ANKRD36BQ8N2N9 1353 aa25.28■■□□□ 1.64
CAPN3-209ENST00000466222 NSD3Q9BZ95 1437 aa25.28■■□□□ 1.64
CAPN3-209ENST00000466222 CD163L1Q9NR16 1453 aa25.27■■□□□ 1.64
CAPN3-209ENST00000466222 PPIP5K1Q6PFW1 1433 aa25.27■■□□□ 1.64
CAPN3-209ENST00000466222 ATP7BP35670 1465 aa25.26■■□□□ 1.63
CAPN3-209ENST00000466222 ADGRB2O60241 1585 aa25.25■■□□□ 1.63
CAPN3-209ENST00000466222 KTN1Q86UP2 1357 aaKnown RBP25.25■■□□□ 1.63
CAPN3-209ENST00000466222 TERF2IPQ9NYB0 399 aa25.24■■□□□ 1.63
CAPN3-209ENST00000466222 NWD1Q149M9 1564 aa25.24■■□□□ 1.63
CAPN3-209ENST00000466222 TMEM94Q12767 1356 aa25.24■■□□□ 1.63
CAPN3-209ENST00000466222 NINLQ9Y2I6 1382 aa25.24■■□□□ 1.63
CAPN3-209ENST00000466222 MYT1Q01538 1121 aa25.23■■□□□ 1.63
CAPN3-209ENST00000466222 PMFBP1Q8TBY8 1022 aa25.23■■□□□ 1.63
CAPN3-209ENST00000466222 HDGFL2Q7Z4V5 671 aaPredicted RBP25.22■■□□□ 1.63
CAPN3-209ENST00000466222 ADGRL3Q9HAR2 1447 aa25.21■■□□□ 1.63
CAPN3-209ENST00000466222 PARD3Q8TEW0 1356 aa25.21■■□□□ 1.63
CAPN3-209ENST00000466222 RALBP1Q15311 655 aa25.2■■□□□ 1.62
CAPN3-209ENST00000466222 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.18■■□□□ 1.62
CAPN3-209ENST00000466222 NKTRP30414 1462 aaKnown RBP25.18■■□□□ 1.62
CAPN3-209ENST00000466222 ACEP12821 1306 aa25.18■■□□□ 1.62
CAPN3-209ENST00000466222 STRCP1A6NGW2 1772 aa25.17■■□□□ 1.62
CAPN3-209ENST00000466222 PLEKHG3A1L390 1219 aa25.17■■□□□ 1.62
CAPN3-209ENST00000466222 CPSF1Q10570 1443 aaKnown RBP25.17■■□□□ 1.62
CAPN3-209ENST00000466222 C19orf44Q9H6X5 657 aa25.16■■□□□ 1.62
CAPN3-209ENST00000466222 DMRT2Q9Y5R5 561 aa25.16■■□□□ 1.62
CAPN3-209ENST00000466222 MRS2Q9HD23 443 aa25.16■■□□□ 1.62
CAPN3-209ENST00000466222 NALCNQ8IZF0 1738 aa25.15■■□□□ 1.62
CAPN3-209ENST00000466222 CGNL1Q0VF96 1302 aa25.15■■□□□ 1.62
CAPN3-209ENST00000466222 MYBBP1AQ9BQG0 1328 aaKnown RBP25.15■■□□□ 1.62
CAPN3-209ENST00000466222 GGNBP2Q9H3C7 697 aa25.15■■□□□ 1.62
CAPN3-209ENST00000466222 TNNT2P45379 298 aaPredicted RBP25.14■■□□□ 1.62
CAPN3-209ENST00000466222 FYB1O15117 783 aa25.14■■□□□ 1.61
CAPN3-209ENST00000466222 USP32Q8NFA0 1604 aa25.13■■□□□ 1.61
CAPN3-209ENST00000466222 NPC1L1Q9UHC9 1359 aa25.13■■□□□ 1.61
CAPN3-209ENST00000466222 ORAI2Q96SN7 254 aa25.12■■□□□ 1.61
CAPN3-209ENST00000466222 ESCO1Q5FWF5 840 aa25.11■■□□□ 1.61
CAPN3-209ENST00000466222 NGDNQ8NEJ9 315 aaKnown RBP25.11■■□□□ 1.61
CAPN3-209ENST00000466222 CDC42BPGQ6DT37 1551 aa25.1■■□□□ 1.61
CAPN3-209ENST00000466222 PPP2R1AP30153 589 aa25.1■■□□□ 1.61
CAPN3-209ENST00000466222 MORC1Q86VD1 984 aa25.1■■□□□ 1.61
CAPN3-209ENST00000466222 ZRANB1Q9UGI0 708 aa25.1■■□□□ 1.61
CAPN3-209ENST00000466222 ANKARQ7Z5J8 1434 aa25.1■■□□□ 1.61
CAPN3-209ENST00000466222 NME9Q86XW9 330 aa25.09■■□□□ 1.61
CAPN3-209ENST00000466222 ZNF692Q9BU19 519 aaPredicted RBP25.09■■□□□ 1.61
CAPN3-209ENST00000466222 LRRC7Q96NW7 1537 aa25.09■■□□□ 1.61
CAPN3-209ENST00000466222 ATF3P18847 181 aa25.07■■□□□ 1.6
CAPN3-209ENST00000466222 NLRP13Q86W25 1043 aa25.07■■□□□ 1.6
CAPN3-209ENST00000466222 PHF8Q9UPP1 1060 aa25.07■■□□□ 1.6
CAPN3-209ENST00000466222 AEBP2Q6ZN18 517 aaPredicted RBP25.06■■□□□ 1.6
CAPN3-209ENST00000466222 NEFLP07196 543 aa25.06■■□□□ 1.6
CAPN3-209ENST00000466222 EDC4Q6P2E9 1401 aaKnown RBP25.05■■□□□ 1.6
CAPN3-209ENST00000466222 FBLN1P23142 703 aa25.05■■□□□ 1.6
CAPN3-209ENST00000466222 FAM9BQ8IZU0 186 aa25.05■■□□□ 1.6
CAPN3-209ENST00000466222 POLR3AO14802 1390 aaPredicted RBP25.05■■□□□ 1.6
CAPN3-209ENST00000466222 FMN2Q9NZ56 1722 aa25.04■■□□□ 1.6
CAPN3-209ENST00000466222 TTC21BQ7Z4L5 1316 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 228 ms