RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ARHGEF28Q8N1W1 1705 aaKnown RBP11.73□□□□□ -0.53
SYNE1-217ENST00000466159 BCL11AQ9H165 835 aa11.73□□□□□ -0.53
SYNE1-217ENST00000466159 MYO5BQ9ULV0 1848 aa11.72□□□□□ -0.53
SYNE1-217ENST00000466159 EVC2Q86UK5 1308 aa11.72□□□□□ -0.53
SYNE1-217ENST00000466159 CABP2Q9NPB3 220 aa11.72□□□□□ -0.53
SYNE1-217ENST00000466159 SLC52A1Q9NWF4 448 aa11.72□□□□□ -0.53
SYNE1-217ENST00000466159 STK26Q9P289 416 aa11.72□□□□□ -0.53
SYNE1-217ENST00000466159 TULP4Q9NRJ4 1543 aa11.72□□□□□ -0.53
SYNE1-217ENST00000466159 CGNL1Q0VF96 1302 aa11.71□□□□□ -0.54
SYNE1-217ENST00000466159 PAK3O75914 559 aaPredicted RBP11.71□□□□□ -0.54
SYNE1-217ENST00000466159 ANP32AP39687 249 aaKnown RBP11.71□□□□□ -0.54
SYNE1-217ENST00000466159 NKTRP30414 1462 aaKnown RBP11.71□□□□□ -0.54
SYNE1-217ENST00000466159 SHPRHQ149N8 1683 aa11.7□□□□□ -0.54
SYNE1-217ENST00000466159 E9PSI1 815 aa11.7□□□□□ -0.54
SYNE1-217ENST00000466159 PDE4AP27815 886 aa11.7□□□□□ -0.54
SYNE1-217ENST00000466159 MTHFSP49914 203 aa11.7□□□□□ -0.54
SYNE1-217ENST00000466159 FBXO31Q5XUX0 539 aaPredicted RBP11.7□□□□□ -0.54
SYNE1-217ENST00000466159 NOP58Q9Y2X3 529 aaKnown RBP11.7□□□□□ -0.54
SYNE1-217ENST00000466159 BCAR3O75815 825 aa11.7□□□□□ -0.54
SYNE1-217ENST00000466159 WWC1Q8IX03 1113 aa11.7□□□□□ -0.54
SYNE1-217ENST00000466159 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.7□□□□□ -0.54
SYNE1-217ENST00000466159 PREX1Q8TCU6 1659 aa11.69□□□□□ -0.54
SYNE1-217ENST00000466159 FAM69CQ0P6D2 419 aa11.69□□□□□ -0.54
SYNE1-217ENST00000466159 NEUROD2Q15784 382 aa11.69□□□□□ -0.54
SYNE1-217ENST00000466159 IPO9Q96P70 1041 aaKnown RBP11.69□□□□□ -0.54
SYNE1-217ENST00000466159 PUS7Q96PZ0 661 aaKnown RBP11.69□□□□□ -0.54
SYNE1-217ENST00000466159 RRP7AQ9Y3A4 280 aaKnown RBP11.69□□□□□ -0.54
SYNE1-217ENST00000466159 ZFYVE9O95405 1425 aa11.69□□□□□ -0.54
SYNE1-217ENST00000466159 ANKRD36BQ8N2N9 1353 aa11.68□□□□□ -0.54
SYNE1-217ENST00000466159 MS4A1P11836 297 aa11.68□□□□□ -0.54
SYNE1-217ENST00000466159 NGEFQ8N5V2 710 aa11.68□□□□□ -0.54
SYNE1-217ENST00000466159 TMEM131LA2VDJ0 1609 aa11.68□□□□□ -0.54
SYNE1-217ENST00000466159 USP32Q8NFA0 1604 aa11.68□□□□□ -0.54
SYNE1-217ENST00000466159 BACH2Q9BYV9 841 aa11.68□□□□□ -0.54
SYNE1-217ENST00000466159 KDM2BQ8NHM5 1336 aa11.68□□□□□ -0.54
SYNE1-217ENST00000466159 SRPK2P78362 688 aaKnown RBP11.67□□□□□ -0.54
SYNE1-217ENST00000466159 NPM2Q86SE8 214 aaKnown RBP11.67□□□□□ -0.54
SYNE1-217ENST00000466159 TCP11L2Q8N4U5 519 aa11.67□□□□□ -0.54
SYNE1-217ENST00000466159 RUNDC1Q96C34 613 aa11.67□□□□□ -0.54
SYNE1-217ENST00000466159 TSPOAP1O95153 1857 aa11.66□□□□□ -0.54
SYNE1-217ENST00000466159 MINK1Q8N4C8 1332 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-217ENST00000466159 CFAP53Q96M91 514 aa11.65□□□□□ -0.54
SYNE1-217ENST00000466159 PRAM1Q96QH2 718 aa11.65□□□□□ -0.54
SYNE1-217ENST00000466159 A0A1W2PP64 1363 aa11.65□□□□□ -0.54
SYNE1-217ENST00000466159 PTPRMP28827 1452 aa11.65□□□□□ -0.54
SYNE1-217ENST00000466159 CENPQQ7L2Z9 268 aaPredicted RBP11.64□□□□□ -0.55
SYNE1-217ENST00000466159 NSD2O96028 1365 aa11.64□□□□□ -0.55
SYNE1-217ENST00000466159 POGKQ9P215 609 aa11.64□□□□□ -0.55
SYNE1-217ENST00000466159 STAG3Q9UJ98 1225 aa11.64□□□□□ -0.55
SYNE1-217ENST00000466159 IQSEC2Q5JU85 1478 aa11.63□□□□□ -0.55
SYNE1-217ENST00000466159 YTHDC2Q9H6S0 1430 aaKnown RBP11.63□□□□□ -0.55
SYNE1-217ENST00000466159 ZBTB47Q9UFB7 747 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-217ENST00000466159 PHF23Q9BUL5 403 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-217ENST00000466159 GGNBP2Q9H3C7 697 aa11.63□□□□□ -0.55
SYNE1-217ENST00000466159 DIP2BQ9P265 1576 aa11.63□□□□□ -0.55
SYNE1-217ENST00000466159 U2AF1L5P0DN76 240 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-217ENST00000466159 U2AF1Q01081 240 aaKnown RBP eCLIP11.62□□□□□ -0.55
SYNE1-217ENST00000466159 ABCC11Q96J66 1382 aa11.62□□□□□ -0.55
SYNE1-217ENST00000466159 ALKQ9UM73 1620 aa11.61□□□□□ -0.55
SYNE1-217ENST00000466159 NINLQ9Y2I6 1382 aa11.61□□□□□ -0.55
SYNE1-217ENST00000466159 MLECQ14165 292 aa11.6□□□□□ -0.55
SYNE1-217ENST00000466159 WDR63Q8IWG1 891 aa11.6□□□□□ -0.55
SYNE1-217ENST00000466159 PANK1Q8TE04 598 aa11.6□□□□□ -0.55
SYNE1-217ENST00000466159 ATAD2Q6PL18 1390 aa11.6□□□□□ -0.55
SYNE1-217ENST00000466159 FYB1O15117 783 aa11.6□□□□□ -0.55
SYNE1-217ENST00000466159 CDK19Q9BWU1 502 aa11.6□□□□□ -0.55
SYNE1-217ENST00000466159 CD163L1Q9NR16 1453 aa11.6□□□□□ -0.55
SYNE1-217ENST00000466159 CANXP27824 592 aaKnown RBP11.59□□□□□ -0.55
SYNE1-217ENST00000466159 PDE3AQ14432 1141 aa11.59□□□□□ -0.55
SYNE1-217ENST00000466159 FRAT1Q92837 279 aaPredicted RBP11.59□□□□□ -0.55
SYNE1-217ENST00000466159 TERF2IPQ9NYB0 399 aa11.59□□□□□ -0.55
SYNE1-217ENST00000466159 CLTCQ00610 1675 aaKnown RBP11.59□□□□□ -0.55
SYNE1-217ENST00000466159 RARSP54136 660 aaKnown RBP11.59□□□□□ -0.55
SYNE1-217ENST00000466159 NBR1Q14596 966 aa11.59□□□□□ -0.55
SYNE1-217ENST00000466159 CCDC27Q2M243 656 aa11.59□□□□□ -0.55
SYNE1-217ENST00000466159 COG6Q9Y2V7 657 aa11.59□□□□□ -0.55
SYNE1-217ENST00000466159 U2SURPO15042 1029 aaKnown RBP11.58□□□□□ -0.56
SYNE1-217ENST00000466159 IGHDP01880 384 aa11.58□□□□□ -0.56
SYNE1-217ENST00000466159 WAPLQ7Z5K2 1190 aa11.58□□□□□ -0.56
SYNE1-217ENST00000466159 CABP1Q9NZU7 370 aa11.58□□□□□ -0.56
SYNE1-217ENST00000466159 RGS3P49796 1198 aa11.57□□□□□ -0.56
SYNE1-217ENST00000466159 BCL2L13Q9BXK5 485 aa11.57□□□□□ -0.56
SYNE1-217ENST00000466159 PPP6R1Q9UPN7 881 aa11.57□□□□□ -0.56
SYNE1-217ENST00000466159 AGLP35573 1532 aa11.57□□□□□ -0.56
SYNE1-217ENST00000466159 ARHGEF40Q8TER5 1519 aa11.57□□□□□ -0.56
SYNE1-217ENST00000466159 A2ML1A8K2U0 1454 aa11.57□□□□□ -0.56
SYNE1-217ENST00000466159 NLRP1Q9C000 1473 aa11.57□□□□□ -0.56
SYNE1-217ENST00000466159 TNNQ9UQP3 1299 aa11.56□□□□□ -0.56
SYNE1-217ENST00000466159 REREQ9P2R6 1566 aa11.56□□□□□ -0.56
SYNE1-217ENST00000466159 HDGFL2Q7Z4V5 671 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-217ENST00000466159 PLEKHF1Q96S99 279 aa11.56□□□□□ -0.56
SYNE1-217ENST00000466159 CLUAP1Q96AJ1 413 aa11.56□□□□□ -0.56
SYNE1-217ENST00000466159 COL3A1P02461 1466 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-217ENST00000466159 ADGRB2O60241 1585 aa11.55□□□□□ -0.56
SYNE1-217ENST00000466159 RIMS2Q9UQ26 1411 aa11.55□□□□□ -0.56
SYNE1-217ENST00000466159 RLBP1P12271 317 aa11.55□□□□□ -0.56
SYNE1-217ENST00000466159 C8orf34Q49A92 452 aa11.55□□□□□ -0.56
SYNE1-217ENST00000466159 ANKRD26Q9UPS8 1709 aa11.55□□□□□ -0.56
SYNE1-217ENST00000466159 MYH16Q9H6N6 1097 aa11.55□□□□□ -0.56
SYNE1-217ENST00000466159 SPATA31D1Q6ZQQ2 1576 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms