RNA–Protein interactions for RNA: ENST00000465860.5

EXOSC3-204, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 509 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-204ENST00000465860 LIAT1Q6ZQX7 453 aa8.74□□□□□ -1.01
EXOSC3-204ENST00000465860 FANCD2Q9BXW9 1451 aa8.74□□□□□ -1.01
EXOSC3-204ENST00000465860 NRG2O14511 850 aaPredicted RBP8.73□□□□□ -1.01
EXOSC3-204ENST00000465860 LCE2BO14633 110 aa8.73□□□□□ -1.01
EXOSC3-204ENST00000465860 PLA2G2CQ5R387 149 aa8.73□□□□□ -1.01
EXOSC3-204ENST00000465860 MRC2Q9UBG0 1479 aa8.72□□□□□ -1.01
EXOSC3-204ENST00000465860 SPRYD7Q5W111 196 aa8.72□□□□□ -1.01
EXOSC3-204ENST00000465860 PDZRN3Q9UPQ7 1066 aa8.72□□□□□ -1.01
EXOSC3-204ENST00000465860 CEP164Q9UPV0 1460 aa8.71□□□□□ -1.01
EXOSC3-204ENST00000465860 WDR62O43379 1518 aa8.71□□□□□ -1.01
EXOSC3-204ENST00000465860 SUPT5HO00267 1087 aaKnown RBP8.71□□□□□ -1.02
EXOSC3-204ENST00000465860 FMNL1O95466 1100 aaPredicted RBP8.71□□□□□ -1.02
EXOSC3-204ENST00000465860 TRIM67Q6ZTA4 783 aa8.71□□□□□ -1.02
EXOSC3-204ENST00000465860 FAM160A2Q8N612 972 aaPredicted RBP8.71□□□□□ -1.02
EXOSC3-204ENST00000465860 GRIPAP1Q4V328 841 aa8.7□□□□□ -1.02
EXOSC3-204ENST00000465860 BRICD5Q6PL45 260 aa8.7□□□□□ -1.02
EXOSC3-204ENST00000465860 RNF19BQ6ZMZ0 732 aa8.7□□□□□ -1.02
EXOSC3-204ENST00000465860 SALL2Q9Y467 1007 aaPredicted RBP8.7□□□□□ -1.02
EXOSC3-204ENST00000465860 URB2Q14146 1524 aaKnown RBP8.7□□□□□ -1.02
EXOSC3-204ENST00000465860 KDM4AO75164 1064 aa8.69□□□□□ -1.02
EXOSC3-204ENST00000465860 ZNF598Q86UK7 904 aaKnown RBP8.69□□□□□ -1.02
EXOSC3-204ENST00000465860 GPCPD1Q9NPB8 672 aa8.69□□□□□ -1.02
EXOSC3-204ENST00000465860 PRDM9Q9NQV7 894 aa8.69□□□□□ -1.02
EXOSC3-204ENST00000465860 ZMYND10O75800 440 aa8.68□□□□□ -1.02
EXOSC3-204ENST00000465860 CLCN1P35523 988 aa8.68□□□□□ -1.02
EXOSC3-204ENST00000465860 TRAF7Q6Q0C0 670 aa8.68□□□□□ -1.02
EXOSC3-204ENST00000465860 BARGINQ6ZT62 677 aa8.68□□□□□ -1.02
EXOSC3-204ENST00000465860 ZC3H15Q8WU90 426 aaKnown RBP8.68□□□□□ -1.02
EXOSC3-204ENST00000465860 HLA-CQ95604 372 aa8.68□□□□□ -1.02
EXOSC3-204ENST00000465860 REPIN1Q9BWE0 567 aaKnown RBP8.68□□□□□ -1.02
EXOSC3-204ENST00000465860 FAM217BQ9NTX9 383 aaPredicted RBP8.68□□□□□ -1.02
EXOSC3-204ENST00000465860 ZNF697Q5TEC3 545 aa8.67□□□□□ -1.02
EXOSC3-204ENST00000465860 KRI1Q8N9T8 703 aaKnown RBP8.67□□□□□ -1.02
EXOSC3-204ENST00000465860 FCF1Q9Y324 198 aaKnown RBP8.66□□□□□ -1.02
EXOSC3-204ENST00000465860 MSS51Q4VC12 460 aa8.65□□□□□ -1.02
EXOSC3-204ENST00000465860 HOXA2O43364 376 aa8.64□□□□□ -1.03
EXOSC3-204ENST00000465860 GDF9O60383 454 aa8.64□□□□□ -1.03
EXOSC3-204ENST00000465860 USP46P62068 366 aa8.64□□□□□ -1.03
EXOSC3-204ENST00000465860 PRR20EP86478 221 aa8.63□□□□□ -1.03
EXOSC3-204ENST00000465860 PRR20CP86479 221 aa8.63□□□□□ -1.03
EXOSC3-204ENST00000465860 PRR20DP86480 221 aa8.63□□□□□ -1.03
EXOSC3-204ENST00000465860 PRR20BP86481 221 aa8.63□□□□□ -1.03
EXOSC3-204ENST00000465860 PRR20AP86496 221 aa8.63□□□□□ -1.03
EXOSC3-204ENST00000465860 GUCA2AQ02747 115 aa8.63□□□□□ -1.03
EXOSC3-204ENST00000465860 Q3C1V9 767 aa8.63□□□□□ -1.03
EXOSC3-204ENST00000465860 TNFRSF10AO00220 468 aa8.62□□□□□ -1.03
EXOSC3-204ENST00000465860 RPIAP49247 311 aa8.62□□□□□ -1.03
EXOSC3-204ENST00000465860 TOPBP1Q92547 1522 aa8.61□□□□□ -1.03
EXOSC3-204ENST00000465860 SSTR3P32745 418 aaPredicted RBP8.61□□□□□ -1.03
EXOSC3-204ENST00000465860 USB1Q9BQ65 265 aaKnown RBP8.61□□□□□ -1.03
EXOSC3-204ENST00000465860 MMP16P51512 607 aa8.6□□□□□ -1.03
EXOSC3-204ENST00000465860 AMHR2Q16671 573 aa8.6□□□□□ -1.03
EXOSC3-204ENST00000465860 TTLL12Q14166 644 aaPredicted RBP8.59□□□□□ -1.03
EXOSC3-204ENST00000465860 NUTM1Q86Y26 1132 aa8.59□□□□□ -1.03
EXOSC3-204ENST00000465860 PKD2L1Q9P0L9 805 aa8.59□□□□□ -1.03
EXOSC3-204ENST00000465860 DNMBPQ6XZF7 1577 aa8.59□□□□□ -1.03
EXOSC3-204ENST00000465860 FOXC1Q12948 553 aa8.58□□□□□ -1.04
EXOSC3-204ENST00000465860 SYMPKQ92797 1274 aaKnown RBP8.58□□□□□ -1.04
EXOSC3-204ENST00000465860 DXOO77932 396 aaKnown RBP8.57□□□□□ -1.04
EXOSC3-204ENST00000465860 CD2BP2O95400 341 aaKnown RBP8.57□□□□□ -1.04
EXOSC3-204ENST00000465860 ZNF608Q9ULD9 1512 aaPredicted RBP8.57□□□□□ -1.04
EXOSC3-204ENST00000465860 CUX1P39880 1505 aa8.56□□□□□ -1.04
EXOSC3-204ENST00000465860 TARBP1Q13395 1621 aaKnown RBP8.56□□□□□ -1.04
EXOSC3-204ENST00000465860 DGAT1O75907 488 aa8.56□□□□□ -1.04
EXOSC3-204ENST00000465860 PKDCCQ504Y2 493 aa8.56□□□□□ -1.04
EXOSC3-204ENST00000465860 GIGYF2Q6Y7W6 1299 aaKnown RBP8.56□□□□□ -1.04
EXOSC3-204ENST00000465860 SPIRE2Q8WWL2 714 aa8.56□□□□□ -1.04
EXOSC3-204ENST00000465860 FAM187AA6NFU0 413 aa8.55□□□□□ -1.04
EXOSC3-204ENST00000465860 TRIM66O15016 1216 aa8.55□□□□□ -1.04
EXOSC3-204ENST00000465860 ZBTB24O43167 697 aaPredicted RBP8.55□□□□□ -1.04
EXOSC3-204ENST00000465860 FDX1P10109 184 aa8.55□□□□□ -1.04
EXOSC3-204ENST00000465860 MYT1Q01538 1121 aa8.55□□□□□ -1.04
EXOSC3-204ENST00000465860 PCDHGC3Q9UN70 934 aa8.55□□□□□ -1.04
EXOSC3-204ENST00000465860 POLA1P09884 1462 aaPredicted RBP8.54□□□□□ -1.04
EXOSC3-204ENST00000465860 PARP9Q8IXQ6 854 aa8.54□□□□□ -1.04
EXOSC3-204ENST00000465860 RAD54L2Q9Y4B4 1467 aa8.53□□□□□ -1.04
EXOSC3-204ENST00000465860 NDUFV2P19404 249 aa8.53□□□□□ -1.04
EXOSC3-204ENST00000465860 EIF4G3O43432 1585 aaKnown RBP8.52□□□□□ -1.04
EXOSC3-204ENST00000465860 ABCC8Q09428 1581 aa8.52□□□□□ -1.04
EXOSC3-204ENST00000465860 MOXD2PA6NHM9 499 aa8.52□□□□□ -1.05
EXOSC3-204ENST00000465860 JUNDP17535 347 aa8.52□□□□□ -1.05
EXOSC3-204ENST00000465860 TRIM32Q13049 653 aa8.52□□□□□ -1.05
EXOSC3-204ENST00000465860 RETREG3Q86VR2 466 aa8.52□□□□□ -1.05
EXOSC3-204ENST00000465860 CCDC24Q8N4L8 307 aa8.52□□□□□ -1.05
EXOSC3-204ENST00000465860 AK7Q96M32 723 aa8.52□□□□□ -1.05
EXOSC3-204ENST00000465860 BEGAINQ9BUH8 593 aa8.52□□□□□ -1.05
EXOSC3-204ENST00000465860 TOR4AQ9NXH8 423 aa8.52□□□□□ -1.05
EXOSC3-204ENST00000465860 FGD5Q6ZNL6 1462 aa8.51□□□□□ -1.05
EXOSC3-204ENST00000465860 IFT140Q96RY7 1462 aa8.51□□□□□ -1.05
EXOSC3-204ENST00000465860 C6orf229H3BNL8 230 aa8.5□□□□□ -1.05
EXOSC3-204ENST00000465860 MS4A1P11836 297 aa8.5□□□□□ -1.05
EXOSC3-204ENST00000465860 WDR97A6NE52 1622 aa8.5□□□□□ -1.05
EXOSC3-204ENST00000465860 AQRO60306 1485 aaKnown RBP eCLIP8.5□□□□□ -1.052e-6■■■□□ 15.2
EXOSC3-204ENST00000465860 SYNJ1O43426 1573 aa8.49□□□□□ -1.05
EXOSC3-204ENST00000465860 ZNF787Q6DD87 383 aa8.49□□□□□ -1.05
EXOSC3-204ENST00000465860 CYP4X1Q8N118 509 aa8.49□□□□□ -1.05
EXOSC3-204ENST00000465860 WNT7AO00755 349 aa8.48□□□□□ -1.05
EXOSC3-204ENST00000465860 TBC1D2Q9BYX2 928 aa8.48□□□□□ -1.05
EXOSC3-204ENST00000465860 BIVM-ERCC5R4GMW8 1640 aa8.47□□□□□ -1.05
EXOSC3-204ENST00000465860 SOGA1O94964 1423 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms