RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 KANK1Q14678 1352 aa25.06■■□□□ 1.6
SDF4-205ENST00000465727 PHF23Q9BUL5 403 aaPredicted RBP25.06■■□□□ 1.6
SDF4-205ENST00000465727 MYO3AQ8NEV4 1616 aa25.06■■□□□ 1.6
SDF4-205ENST00000465727 TET3O43151 1660 aa25.05■■□□□ 1.6
SDF4-205ENST00000465727 DEPDC5O75140 1603 aa25.05■■□□□ 1.6
SDF4-205ENST00000465727 GLIPR1L2Q4G1C9 344 aa25.05■■□□□ 1.6
SDF4-205ENST00000465727 NCBP3Q53F19 620 aaKnown RBP25.05■■□□□ 1.6
SDF4-205ENST00000465727 RUNDC1Q96C34 613 aa25.05■■□□□ 1.6
SDF4-205ENST00000465727 SBNO2Q9Y2G9 1366 aa25.04■■□□□ 1.6
SDF4-205ENST00000465727 MRE11P49959 708 aa25.04■■□□□ 1.6
SDF4-205ENST00000465727 PNNQ9H307 717 aaKnown RBP25.04■■□□□ 1.6
SDF4-205ENST00000465727 MYOM2P54296 1465 aa25.04■■□□□ 1.6
SDF4-205ENST00000465727 CARD14Q9BXL6 1004 aa25.03■■□□□ 1.6
SDF4-205ENST00000465727 MAP3K4Q9Y6R4 1608 aa25.03■■□□□ 1.6
SDF4-205ENST00000465727 ABCC1P33527 1531 aa25.02■■□□□ 1.6
SDF4-205ENST00000465727 CCDC27Q2M243 656 aa25.02■■□□□ 1.6
SDF4-205ENST00000465727 RTEL1-TNFRSF6BF6WH68 1400 aa25.01■■□□□ 1.6
SDF4-205ENST00000465727 RLBP1P12271 317 aa25■■□□□ 1.59
SDF4-205ENST00000465727 PLCH2O75038 1416 aa25■■□□□ 1.59
SDF4-205ENST00000465727 ABCA6Q8N139 1617 aa25■■□□□ 1.59
SDF4-205ENST00000465727 DDX11L8A8MPP1 907 aa25■■□□□ 1.59
SDF4-205ENST00000465727 TRAK2O60296 914 aa24.99■■□□□ 1.59
SDF4-205ENST00000465727 C22orf23Q9BZE7 217 aa24.99■■□□□ 1.59
SDF4-205ENST00000465727 MVPQ14764 893 aaKnown RBP24.97■■□□□ 1.59
SDF4-205ENST00000465727 USP32Q8NFA0 1604 aa24.96■■□□□ 1.59
SDF4-205ENST00000465727 TCP11L2Q8N4U5 519 aa24.96■■□□□ 1.59
SDF4-205ENST00000465727 CT47B1P0C2W7 299 aaPredicted RBP24.95■■□□□ 1.59
SDF4-205ENST00000465727 MYH16Q9H6N6 1097 aa24.95■■□□□ 1.59
SDF4-205ENST00000465727 NAP1L5Q96NT1 182 aaPredicted RBP24.95■■□□□ 1.58
SDF4-205ENST00000465727 TRHP20396 242 aaPredicted RBP24.94■■□□□ 1.58
SDF4-205ENST00000465727 PANK2Q9BZ23 570 aa24.94■■□□□ 1.58
SDF4-205ENST00000465727 NCOA3Q9Y6Q9 1424 aa24.94■■□□□ 1.58
SDF4-205ENST00000465727 VWDEQ8N2E2 1590 aa24.94■■□□□ 1.58
SDF4-205ENST00000465727 EFCAB2Q5VUJ9 269 aa24.93■■□□□ 1.58
SDF4-205ENST00000465727 IFT172Q9UG01 1749 aa24.93■■□□□ 1.58
SDF4-205ENST00000465727 ADGRL1O94910 1474 aa24.93■■□□□ 1.58
SDF4-205ENST00000465727 HSCBQ8IWL3 235 aa24.92■■□□□ 1.58
SDF4-205ENST00000465727 GZF1Q9H116 711 aaPredicted RBP24.92■■□□□ 1.58
SDF4-205ENST00000465727 ZFYVE16Q7Z3T8 1539 aa24.91■■□□□ 1.58
SDF4-205ENST00000465727 RRP9O43818 475 aaKnown RBP24.91■■□□□ 1.58
SDF4-205ENST00000465727 HDAC1Q13547 482 aaPredicted RBP24.91■■□□□ 1.58
SDF4-205ENST00000465727 ZKSCAN2Q63HK3 967 aa24.91■■□□□ 1.58
SDF4-205ENST00000465727 MORC1Q86VD1 984 aa24.91■■□□□ 1.58
SDF4-205ENST00000465727 GRPEL1Q9HAV7 217 aa24.91■■□□□ 1.58
SDF4-205ENST00000465727 ZNF518AQ6AHZ1 1483 aa24.91■■□□□ 1.58
SDF4-205ENST00000465727 KIF1BO60333 1816 aa24.9■■□□□ 1.58
SDF4-205ENST00000465727 NSD3Q9BZ95 1437 aa24.9■■□□□ 1.58
SDF4-205ENST00000465727 TRAPPC8Q9Y2L5 1435 aa24.9■■□□□ 1.58
SDF4-205ENST00000465727 NEUROD2Q15784 382 aa24.9■■□□□ 1.58
SDF4-205ENST00000465727 TNNQ9UQP3 1299 aa24.9■■□□□ 1.58
SDF4-205ENST00000465727 HSP90AA1P07900 732 aaKnown RBP24.89■■□□□ 1.58
SDF4-205ENST00000465727 SETBP1Q9Y6X0 1596 aa24.89■■□□□ 1.57
SDF4-205ENST00000465727 DZIP1LQ8IYY4 767 aaKnown RBP24.89■■□□□ 1.57
SDF4-205ENST00000465727 ARXQ96QS3 562 aa24.89■■□□□ 1.57
SDF4-205ENST00000465727 MFAP1P55081 439 aaKnown RBP24.88■■□□□ 1.57
SDF4-205ENST00000465727 FTSJ3Q8IY81 847 aaKnown RBP24.88■■□□□ 1.57
SDF4-205ENST00000465727 SPRYD3Q8NCJ5 442 aa24.88■■□□□ 1.57
SDF4-205ENST00000465727 ZNF692Q9BU19 519 aaPredicted RBP24.88■■□□□ 1.57
SDF4-205ENST00000465727 RRP7AQ9Y3A4 280 aaKnown RBP24.88■■□□□ 1.57
SDF4-205ENST00000465727 NRXN1Q9ULB1 1477 aa24.88■■□□□ 1.57
SDF4-205ENST00000465727 ADGRB2O60241 1585 aa24.88■■□□□ 1.57
SDF4-205ENST00000465727 PTMSP20962 102 aa24.87■■□□□ 1.57
SDF4-205ENST00000465727 CFAP70Q5T0N1 1121 aa24.87■■□□□ 1.57
SDF4-205ENST00000465727 CFAP53Q96M91 514 aa24.87■■□□□ 1.57
SDF4-205ENST00000465727 DDIT3P35638 169 aa24.87■■□□□ 1.57
SDF4-205ENST00000465727 BCL2L13Q9BXK5 485 aa24.87■■□□□ 1.57
SDF4-205ENST00000465727 CIZ1Q9ULV3 898 aaPredicted RBP24.87■■□□□ 1.57
SDF4-205ENST00000465727 SPAG9O60271 1321 aaKnown RBP24.86■■□□□ 1.57
SDF4-205ENST00000465727 SNX21Q969T3 373 aa24.86■■□□□ 1.57
SDF4-205ENST00000465727 ZC3H13Q5T200 1668 aaKnown RBP24.86■■□□□ 1.57
SDF4-205ENST00000465727 ARAP3Q8WWN8 1544 aa24.85■■□□□ 1.57
SDF4-205ENST00000465727 ESPNB1AK53 854 aa24.84■■□□□ 1.57
SDF4-205ENST00000465727 RBM25P49756 843 aaKnown RBP24.84■■□□□ 1.57
SDF4-205ENST00000465727 HSP90AA2PQ14568 343 aaPredicted RBP24.84■■□□□ 1.57
SDF4-205ENST00000465727 DDX19BQ9UMR2 479 aa24.84■■□□□ 1.57
SDF4-205ENST00000465727 SKOR2Q2VWA4 1001 aaPredicted RBP24.82■■□□□ 1.56
SDF4-205ENST00000465727 SMC5Q8IY18 1101 aa24.82■■□□□ 1.56
SDF4-205ENST00000465727 INO80Q9ULG1 1556 aaPredicted RBP24.82■■□□□ 1.56
SDF4-205ENST00000465727 GBP4Q96PP9 640 aa24.81■■□□□ 1.56
SDF4-205ENST00000465727 ADGRF5Q8IZF2 1346 aa24.8■■□□□ 1.56
SDF4-205ENST00000465727 QRICH2Q9H0J4 1663 aa24.8■■□□□ 1.56
SDF4-205ENST00000465727 NSD2O96028 1365 aa24.79■■□□□ 1.56
SDF4-205ENST00000465727 TRIM44Q96DX7 344 aaPredicted RBP24.79■■□□□ 1.56
SDF4-205ENST00000465727 MTHFSP49914 203 aa24.77■■□□□ 1.56
SDF4-205ENST00000465727 ZCCHC11Q5TAX3 1644 aaKnown RBP24.76■■□□□ 1.55
SDF4-205ENST00000465727 MROH2AA6NES4 1674 aa24.76■■□□□ 1.55
SDF4-205ENST00000465727 SMC4Q9NTJ3 1288 aa24.75■■□□□ 1.55
SDF4-205ENST00000465727 ATP7AQ04656 1500 aa24.75■■□□□ 1.55
SDF4-205ENST00000465727 TRIM27P14373 513 aa24.74■■□□□ 1.55
SDF4-205ENST00000465727 RAB3GAP1Q15042 981 aa24.74■■□□□ 1.55
SDF4-205ENST00000465727 TNNT2P45379 298 aaPredicted RBP24.74■■□□□ 1.55
SDF4-205ENST00000465727 ATF7IPQ6VMQ6 1270 aa24.74■■□□□ 1.55
SDF4-205ENST00000465727 TNPO1Q92973 898 aaKnown RBP24.74■■□□□ 1.55
SDF4-205ENST00000465727 UGGT1Q9NYU2 1555 aa24.73■■□□□ 1.55
SDF4-205ENST00000465727 EFCAB6Q5THR3 1501 aa24.73■■□□□ 1.55
SDF4-205ENST00000465727 ABCC11Q96J66 1382 aa24.73■■□□□ 1.55
SDF4-205ENST00000465727 TPM2P07951 284 aa24.73■■□□□ 1.55
SDF4-205ENST00000465727 PKNOX2Q96KN3 472 aa24.73■■□□□ 1.55
SDF4-205ENST00000465727 PUS7Q96PZ0 661 aaKnown RBP24.73■■□□□ 1.55
SDF4-205ENST00000465727 MROH1Q8NDA8 1641 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms