RNA–Protein interactions for RNA: ENST00000465563.5

SMC4-205, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 747 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-205ENST00000465563 HLA-CQ95604 372 aa13.35□□□□□ -0.27
SMC4-205ENST00000465563 TTLL12Q14166 644 aaPredicted RBP13.34□□□□□ -0.27
SMC4-205ENST00000465563 USB1Q9BQ65 265 aaKnown RBP13.34□□□□□ -0.27
SMC4-205ENST00000465563 GDF9O60383 454 aa13.33□□□□□ -0.28
SMC4-205ENST00000465563 CD2BP2O95400 341 aaKnown RBP13.33□□□□□ -0.28
SMC4-205ENST00000465563 SSTR3P32745 418 aaPredicted RBP13.33□□□□□ -0.28
SMC4-205ENST00000465563 AMHR2Q16671 573 aa13.33□□□□□ -0.28
SMC4-205ENST00000465563 TNFRSF10AO00220 468 aa13.31□□□□□ -0.28
SMC4-205ENST00000465563 MMP16P51512 607 aa13.31□□□□□ -0.28
SMC4-205ENST00000465563 ZBTB24O43167 697 aaPredicted RBP13.29□□□□□ -0.28
SMC4-205ENST00000465563 GUCA2AQ02747 115 aa13.29□□□□□ -0.28
SMC4-205ENST00000465563 PKDCCQ504Y2 493 aa13.29□□□□□ -0.28
SMC4-205ENST00000465563 FOXC1Q12948 553 aa13.28□□□□□ -0.28
SMC4-205ENST00000465563 DGAT1O75907 488 aa13.27□□□□□ -0.29
SMC4-205ENST00000465563 DXOO77932 396 aaKnown RBP13.27□□□□□ -0.29
SMC4-205ENST00000465563 GIGYF2Q6Y7W6 1299 aaKnown RBP13.27□□□□□ -0.29
SMC4-205ENST00000465563 PKD2L1Q9P0L9 805 aa13.27□□□□□ -0.29
SMC4-205ENST00000465563 FDX1P10109 184 aa13.24□□□□□ -0.29
SMC4-205ENST00000465563 SPIRE2Q8WWL2 714 aa13.24□□□□□ -0.29
SMC4-205ENST00000465563 FAM187AA6NFU0 413 aa13.23□□□□□ -0.29
SMC4-205ENST00000465563 SYMPKQ92797 1274 aaKnown RBP13.23□□□□□ -0.29
SMC4-205ENST00000465563 AK7Q96M32 723 aa13.23□□□□□ -0.29
SMC4-205ENST00000465563 TRIM66O15016 1216 aa13.22□□□□□ -0.29
SMC4-205ENST00000465563 RETREG3Q86VR2 466 aa13.21□□□□□ -0.29
SMC4-205ENST00000465563 JUNDP17535 347 aa13.2□□□□□ -0.3
SMC4-205ENST00000465563 MYT1Q01538 1121 aa13.2□□□□□ -0.3
SMC4-205ENST00000465563 CCDC24Q8N4L8 307 aa13.2□□□□□ -0.3
SMC4-205ENST00000465563 BEGAINQ9BUH8 593 aa13.2□□□□□ -0.3
SMC4-205ENST00000465563 PCDHGC3Q9UN70 934 aa13.2□□□□□ -0.3
SMC4-205ENST00000465563 C6orf229H3BNL8 230 aa13.19□□□□□ -0.3
SMC4-205ENST00000465563 TRIM32Q13049 653 aa13.19□□□□□ -0.3
SMC4-205ENST00000465563 PARP9Q8IXQ6 854 aa13.19□□□□□ -0.3
SMC4-205ENST00000465563 NDUFV2P19404 249 aa13.18□□□□□ -0.3
SMC4-205ENST00000465563 MOXD2PA6NHM9 499 aa13.17□□□□□ -0.3
SMC4-205ENST00000465563 CYP4X1Q8N118 509 aa13.17□□□□□ -0.3
SMC4-205ENST00000465563 TOR4AQ9NXH8 423 aa13.16□□□□□ -0.3
SMC4-205ENST00000465563 DIXDC1Q155Q3 683 aa13.15□□□□□ -0.3
SMC4-205ENST00000465563 ZNF787Q6DD87 383 aa13.15□□□□□ -0.3
SMC4-205ENST00000465563 WNT7AO00755 349 aa13.14□□□□□ -0.31
SMC4-205ENST00000465563 TBC1D2Q9BYX2 928 aa13.13□□□□□ -0.31
SMC4-205ENST00000465563 MS4A1P11836 297 aa13.12□□□□□ -0.31
SMC4-205ENST00000465563 NUDT12Q9BQG2 462 aa13.12□□□□□ -0.31
SMC4-205ENST00000465563 TTC24A2A3L6 582 aaPredicted RBP13.11□□□□□ -0.31
SMC4-205ENST00000465563 GJA5P36382 358 aa13.1□□□□□ -0.31
SMC4-205ENST00000465563 SPDYE5A6NIY4 337 aa13.09□□□□□ -0.31
SMC4-205ENST00000465563 PDE4DQ08499 809 aa13.09□□□□□ -0.31
SMC4-205ENST00000465563 MTMR2Q13614 643 aa13.09□□□□□ -0.31
SMC4-205ENST00000465563 SLC24A3Q9HC58 644 aa13.09□□□□□ -0.31
SMC4-205ENST00000465563 WNT7BP56706 349 aa13.08□□□□□ -0.32
SMC4-205ENST00000465563 SNIP1Q8TAD8 396 aaKnown RBP13.08□□□□□ -0.32
SMC4-205ENST00000465563 PRR7Q8TB68 274 aa13.08□□□□□ -0.32
SMC4-205ENST00000465563 MRGPRX2Q96LB1 330 aa13.08□□□□□ -0.32
SMC4-205ENST00000465563 RSBN1LQ6PCB5 846 aaPredicted RBP13.07□□□□□ -0.32
SMC4-205ENST00000465563 AAASQ9NRG9 546 aa13.07□□□□□ -0.32
SMC4-205ENST00000465563 ST8SIA5O15466 376 aa13.06□□□□□ -0.32
SMC4-205ENST00000465563 AVPP01185 164 aa13.06□□□□□ -0.32
SMC4-205ENST00000465563 CCNYL3P0C7X3 344 aa13.06□□□□□ -0.32
SMC4-205ENST00000465563 SKOR1P84550 965 aa13.05□□□□□ -0.32
SMC4-205ENST00000465563 PTPRNQ16849 979 aa13.05□□□□□ -0.32
SMC4-205ENST00000465563 RC3H1Q5TC82 1133 aaKnown RBP13.05□□□□□ -0.32
SMC4-205ENST00000465563 PTCRAQ6ISU1 281 aaPredicted RBP13.05□□□□□ -0.32
SMC4-205ENST00000465563 CRIPAKQ8N1N5 446 aa13.05□□□□□ -0.32
SMC4-205ENST00000465563 SPTLC1O15269 473 aa13.04□□□□□ -0.32
SMC4-205ENST00000465563 DESI1Q6ICB0 168 aa13.03□□□□□ -0.32
SMC4-205ENST00000465563 PCDHB15Q9Y5E8 787 aa13.03□□□□□ -0.32
SMC4-205ENST00000465563 RIC3Q7Z5B4 369 aa13.02□□□□□ -0.33
SMC4-205ENST00000465563 SMPD1P17405 629 aa13.01□□□□□ -0.33
SMC4-205ENST00000465563 CTC1Q2NKJ3 1217 aa13.01□□□□□ -0.33
SMC4-205ENST00000465563 EVA1BQ9NVM1 165 aa13.01□□□□□ -0.33
SMC4-205ENST00000465563 AXIN1O15169 862 aa13□□□□□ -0.33
SMC4-205ENST00000465563 ZBTB3Q9H5J0 574 aa13□□□□□ -0.33
SMC4-205ENST00000465563 POTECB2RU33 542 aa12.99□□□□□ -0.33
SMC4-205ENST00000465563 BCANQ96GW7 911 aa12.99□□□□□ -0.33
SMC4-205ENST00000465563 J3QL48 77 aa12.98□□□□□ -0.33
SMC4-205ENST00000465563 HRCP23327 699 aa12.98□□□□□ -0.33
SMC4-205ENST00000465563 SMCPP49901 116 aaPredicted RBP12.98□□□□□ -0.33
SMC4-205ENST00000465563 KCNH2Q12809 1159 aa12.98□□□□□ -0.33
SMC4-205ENST00000465563 PRPF38BQ5VTL8 546 aaKnown RBP12.98□□□□□ -0.33
SMC4-205ENST00000465563 UNC93B1Q9H1C4 597 aa12.97□□□□□ -0.33
SMC4-205ENST00000465563 CSPP1Q1MSJ5 1256 aa12.96□□□□□ -0.33
SMC4-205ENST00000465563 MYSM1Q5VVJ2 828 aa12.96□□□□□ -0.33
SMC4-205ENST00000465563 EHBP1Q8NDI1 1231 aa12.96□□□□□ -0.33
SMC4-205ENST00000465563 CFAP99D6REC4 459 aa12.95□□□□□ -0.34
SMC4-205ENST00000465563 LYPD8Q6UX82 237 aa12.95□□□□□ -0.34
SMC4-205ENST00000465563 DACH1Q9UI36 760 aa12.95□□□□□ -0.34
SMC4-205ENST00000465563 SLC24A1O60721 1099 aa12.94□□□□□ -0.34
SMC4-205ENST00000465563 SH3BP2P78314 561 aa12.94□□□□□ -0.34
SMC4-205ENST00000465563 CABLES1Q8TDN4 633 aa12.94□□□□□ -0.34
SMC4-205ENST00000465563 ZNF775Q96BV0 537 aaPredicted RBP12.93□□□□□ -0.34
SMC4-205ENST00000465563 LIMD1Q9UGP4 676 aa12.93□□□□□ -0.34
SMC4-205ENST00000465563 ALDH1A1P00352 501 aa12.92□□□□□ -0.34
SMC4-205ENST00000465563 CTHP32929 405 aa12.92□□□□□ -0.34
SMC4-205ENST00000465563 TUSC1Q2TAM9 212 aa12.92□□□□□ -0.34
SMC4-205ENST00000465563 BAP1Q92560 729 aa12.92□□□□□ -0.34
SMC4-205ENST00000465563 SIAH2O43255 324 aa12.91□□□□□ -0.34
SMC4-205ENST00000465563 LINC01559Q495D7 138 aa12.91□□□□□ -0.34
SMC4-205ENST00000465563 NUTM2BA6NNL0 878 aaPredicted RBP12.9□□□□□ -0.34
SMC4-205ENST00000465563 NUTM2EB1AL46 878 aaPredicted RBP12.9□□□□□ -0.34
SMC4-205ENST00000465563 NUTM2DQ5VT03 806 aaPredicted RBP12.9□□□□□ -0.34
SMC4-205ENST00000465563 NUTM2AQ8IVF1 878 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms