RNA–Protein interactions for RNA: ENST00000462658.1

UBE4B-204, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-204ENST00000462658 PCMTD1Q96MG8 357 aaPredicted RBP12.76□□□□□ -0.37
UBE4B-204ENST00000462658 HCSTQ9UBK5 93 aa12.76□□□□□ -0.37
UBE4B-204ENST00000462658 PCDHB15Q9Y5E8 787 aa12.76□□□□□ -0.37
UBE4B-204ENST00000462658 NYAP1Q6ZVC0 841 aa12.75□□□□□ -0.37
UBE4B-204ENST00000462658 SLC27A5Q9Y2P5 690 aa12.75□□□□□ -0.37
UBE4B-204ENST00000462658 RSF1Q96T23 1441 aaPredicted RBP12.73□□□□□ -0.37
UBE4B-204ENST00000462658 SMARCA4P51532 1647 aa12.73□□□□□ -0.37
UBE4B-204ENST00000462658 FBXO31Q5XUX0 539 aaPredicted RBP12.72□□□□□ -0.37
UBE4B-204ENST00000462658 QPCTQ16769 361 aa12.71□□□□□ -0.37
UBE4B-204ENST00000462658 SYMPKQ92797 1274 aaKnown RBP12.71□□□□□ -0.37
UBE4B-204ENST00000462658 MTRQ99707 1265 aa12.71□□□□□ -0.37
UBE4B-204ENST00000462658 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.71□□□□□ -0.37
UBE4B-204ENST00000462658 GJA5P36382 358 aa12.7□□□□□ -0.38
UBE4B-204ENST00000462658 SCUBE3Q8IX30 993 aa12.7□□□□□ -0.38
UBE4B-204ENST00000462658 CABLES1Q8TDN4 633 aa12.7□□□□□ -0.38
UBE4B-204ENST00000462658 MROH2BQ7Z745 1585 aa12.69□□□□□ -0.38
UBE4B-204ENST00000462658 BAZ1AQ9NRL2 1556 aaPredicted RBP12.69□□□□□ -0.38
UBE4B-204ENST00000462658 NR1I2O75469 434 aa12.68□□□□□ -0.38
UBE4B-204ENST00000462658 TJAP1Q5JTD0 557 aa12.68□□□□□ -0.38
UBE4B-204ENST00000462658 RNF19BQ6ZMZ0 732 aa12.68□□□□□ -0.38
UBE4B-204ENST00000462658 ZNF516Q92618 1163 aa12.68□□□□□ -0.38
UBE4B-204ENST00000462658 HRCP23327 699 aa12.67□□□□□ -0.38
UBE4B-204ENST00000462658 TUSC1Q2TAM9 212 aa12.67□□□□□ -0.38
UBE4B-204ENST00000462658 ATAD2BQ9ULI0 1458 aa12.66□□□□□ -0.38
UBE4B-204ENST00000462658 C6orf229H3BNL8 230 aa12.66□□□□□ -0.38
UBE4B-204ENST00000462658 NUTM2BA6NNL0 878 aaPredicted RBP12.65□□□□□ -0.38
UBE4B-204ENST00000462658 NUTM2EB1AL46 878 aaPredicted RBP12.65□□□□□ -0.38
UBE4B-204ENST00000462658 TLL1O43897 1013 aa12.65□□□□□ -0.38
UBE4B-204ENST00000462658 LILRB3O75022 631 aa12.65□□□□□ -0.38
UBE4B-204ENST00000462658 RTL5Q5HYW3 569 aaPredicted RBP12.65□□□□□ -0.38
UBE4B-204ENST00000462658 NUTM2DQ5VT03 806 aaPredicted RBP12.65□□□□□ -0.38
UBE4B-204ENST00000462658 NUTM2AQ8IVF1 878 aaPredicted RBP12.65□□□□□ -0.38
UBE4B-204ENST00000462658 NCAPD3P42695 1498 aa12.65□□□□□ -0.38
UBE4B-204ENST00000462658 THAP11Q96EK4 314 aa12.64□□□□□ -0.39
UBE4B-204ENST00000462658 ZBTB3Q9H5J0 574 aa12.64□□□□□ -0.39
UBE4B-204ENST00000462658 IL21Q9HBE4 155 aa12.64□□□□□ -0.39
UBE4B-204ENST00000462658 ZPR1O75312 459 aa12.63□□□□□ -0.39
UBE4B-204ENST00000462658 MTMR2Q13614 643 aa12.63□□□□□ -0.39
UBE4B-204ENST00000462658 Q3C1V9 767 aa12.63□□□□□ -0.39
UBE4B-204ENST00000462658 BRICD5Q6PL45 260 aa12.63□□□□□ -0.39
UBE4B-204ENST00000462658 FMNL1O95466 1100 aaPredicted RBP12.62□□□□□ -0.39
UBE4B-204ENST00000462658 PRPF38BQ5VTL8 546 aaKnown RBP12.62□□□□□ -0.39
UBE4B-204ENST00000462658 PEG3Q9GZU2 1588 aa12.61□□□□□ -0.39
UBE4B-204ENST00000462658 NKX2-3Q8TAU0 364 aa12.61□□□□□ -0.39
UBE4B-204ENST00000462658 PPP2R2DQ66LE6 453 aa12.6□□□□□ -0.39
UBE4B-204ENST00000462658 RFC5P40937 340 aa12.59□□□□□ -0.39
UBE4B-204ENST00000462658 SPSB2Q99619 263 aa12.59□□□□□ -0.39
UBE4B-204ENST00000462658 SALL2Q9Y467 1007 aaPredicted RBP12.59□□□□□ -0.39
UBE4B-204ENST00000462658 GTF3C3Q9Y5Q9 886 aa12.59□□□□□ -0.39
UBE4B-204ENST00000462658 CFAP99D6REC4 459 aa12.58□□□□□ -0.4
UBE4B-204ENST00000462658 RETREG3Q86VR2 466 aa12.58□□□□□ -0.4
UBE4B-204ENST00000462658 USB1Q9BQ65 265 aaKnown RBP12.58□□□□□ -0.4
UBE4B-204ENST00000462658 HMGXB3Q12766 1538 aa12.57□□□□□ -0.4
UBE4B-204ENST00000462658 FAM160A2Q8N612 972 aaPredicted RBP12.57□□□□□ -0.4
UBE4B-204ENST00000462658 PRR7Q8TB68 274 aa12.57□□□□□ -0.4
UBE4B-204ENST00000462658 TSC1Q92574 1164 aa12.57□□□□□ -0.4
UBE4B-204ENST00000462658 SMARCA2P51531 1590 aa12.56□□□□□ -0.4
UBE4B-204ENST00000462658 ITGBL1O95965 494 aaPredicted RBP12.56□□□□□ -0.4
UBE4B-204ENST00000462658 KCNC4Q03721 635 aa12.56□□□□□ -0.4
UBE4B-204ENST00000462658 WIZO95785 1651 aa12.56□□□□□ -0.4
UBE4B-204ENST00000462658 SPDYE5A6NIY4 337 aa12.55□□□□□ -0.4
UBE4B-204ENST00000462658 ADH1BP00325 375 aa12.55□□□□□ -0.4
UBE4B-204ENST00000462658 PRDM9Q9NQV7 894 aa12.55□□□□□ -0.4
UBE4B-204ENST00000462658 PLSCR2Q9NRY7 297 aa12.55□□□□□ -0.4
UBE4B-204ENST00000462658 AP1G2O75843 785 aa12.53□□□□□ -0.4
UBE4B-204ENST00000462658 CTDSPL2Q05D32 466 aa12.5□□□□□ -0.41
UBE4B-204ENST00000462658 MSS51Q4VC12 460 aa12.5□□□□□ -0.41
UBE4B-204ENST00000462658 BAZ1BQ9UIG0 1483 aaKnown RBP12.49□□□□□ -0.41
UBE4B-204ENST00000462658 SLC6A16Q9GZN6 736 aa12.49□□□□□ -0.41
UBE4B-204ENST00000462658 S1PR4O95977 384 aa12.48□□□□□ -0.41
UBE4B-204ENST00000462658 TMEM259Q4ZIN3 620 aa12.48□□□□□ -0.41
UBE4B-204ENST00000462658 HELBQ8NG08 1087 aaPredicted RBP12.48□□□□□ -0.41
UBE4B-204ENST00000462658 PER1O15534 1290 aaPredicted RBP12.47□□□□□ -0.41
UBE4B-204ENST00000462658 JUNDP17535 347 aa12.47□□□□□ -0.41
UBE4B-204ENST00000462658 USP17L8P0C7I0 530 aa12.46□□□□□ -0.41
UBE4B-204ENST00000462658 SNRKQ9NRH2 765 aa12.46□□□□□ -0.41
UBE4B-204ENST00000462658 NESP48681 1621 aa12.45□□□□□ -0.42
UBE4B-204ENST00000462658 DXOO77932 396 aaKnown RBP12.45□□□□□ -0.42
UBE4B-204ENST00000462658 LRRN4Q8WUT4 740 aa12.45□□□□□ -0.42
UBE4B-204ENST00000462658 PLA2G2EQ9NZK7 142 aa12.45□□□□□ -0.42
UBE4B-204ENST00000462658 TOP2AP11388 1531 aaKnown RBP12.45□□□□□ -0.42
UBE4B-204ENST00000462658 PPEF1O14829 653 aaPredicted RBP12.44□□□□□ -0.42
UBE4B-204ENST00000462658 MMP16P51512 607 aa12.44□□□□□ -0.42
UBE4B-204ENST00000462658 DESI1Q6ICB0 168 aa12.44□□□□□ -0.42
UBE4B-204ENST00000462658 LYPD8Q6UX82 237 aa12.42□□□□□ -0.42
UBE4B-204ENST00000462658 BANK1Q8NDB2 785 aa12.42□□□□□ -0.42
UBE4B-204ENST00000462658 HMX1Q9NP08 348 aaPredicted RBP12.41□□□□□ -0.42
UBE4B-204ENST00000462658 MCM6Q14566 821 aa12.4□□□□□ -0.42
UBE4B-204ENST00000462658 PPP1R18Q6NYC8 613 aa12.4□□□□□ -0.42
UBE4B-204ENST00000462658 RNF223E7ERA6 249 aa12.38□□□□□ -0.43
UBE4B-204ENST00000462658 PTPRNQ16849 979 aa12.38□□□□□ -0.43
UBE4B-204ENST00000462658 CCDC24Q8N4L8 307 aa12.38□□□□□ -0.43
UBE4B-204ENST00000462658 MTMR14Q8NCE2 650 aa12.38□□□□□ -0.43
UBE4B-204ENST00000462658 NUDT12Q9BQG2 462 aa12.38□□□□□ -0.43
UBE4B-204ENST00000462658 FCF1Q9Y324 198 aaKnown RBP12.38□□□□□ -0.43
UBE4B-204ENST00000462658 EPS8L1Q8TE68 723 aa12.37□□□□□ -0.43
UBE4B-204ENST00000462658 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.37□□□□□ -0.43
UBE4B-204ENST00000462658 MAP10Q9P2G4 905 aa12.37□□□□□ -0.43
UBE4B-204ENST00000462658 CCNYL3P0C7X3 344 aa12.36□□□□□ -0.43
UBE4B-204ENST00000462658 FLIIQ13045 1269 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms