RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 UPF1Q92900 1129 aaKnown RBP eCLIP22.82■■□□□ 1.24
SKA3-204ENST00000462482 CDK12Q9NYV4 1490 aaPredicted RBP22.81■■□□□ 1.24
SKA3-204ENST00000462482 RBM6P78332 1123 aaKnown RBP22.81■■□□□ 1.24
SKA3-204ENST00000462482 SETD1AO15047 1707 aaKnown RBP22.8■■□□□ 1.24
SKA3-204ENST00000462482 SPATA31E1Q6ZUB1 1445 aa22.8■■□□□ 1.24
SKA3-204ENST00000462482 LRPPRCP42704 1394 aaKnown RBP22.79■■□□□ 1.24
SKA3-204ENST00000462482 PPLO60437 1756 aa22.78■■□□□ 1.24
SKA3-204ENST00000462482 ABCC11Q96J66 1382 aa22.77■■□□□ 1.24
SKA3-204ENST00000462482 TMEM132EQ6IEE7 984 aa22.77■■□□□ 1.24
SKA3-204ENST00000462482 WAPLQ7Z5K2 1190 aa22.77■■□□□ 1.24
SKA3-204ENST00000462482 USP21Q9UK80 565 aa22.76■■□□□ 1.23
SKA3-204ENST00000462482 TECPR2O15040 1411 aa22.75■■□□□ 1.23
SKA3-204ENST00000462482 NUTM2FA1L443 756 aa22.75■■□□□ 1.23
SKA3-204ENST00000462482 FOXO3O43524 673 aa22.75■■□□□ 1.23
SKA3-204ENST00000462482 CDC42BPGQ6DT37 1551 aa22.75■■□□□ 1.23
SKA3-204ENST00000462482 TRPC5Q9UL62 973 aaPredicted RBP22.73■■□□□ 1.23
SKA3-204ENST00000462482 PIK3C2GO75747 1445 aa22.73■■□□□ 1.23
SKA3-204ENST00000462482 LAMC1P11047 1609 aa22.72■■□□□ 1.23
SKA3-204ENST00000462482 XPCQ01831 940 aaPredicted RBP22.71■■□□□ 1.23
SKA3-204ENST00000462482 YTHDC2Q9H6S0 1430 aaKnown RBP22.71■■□□□ 1.23
SKA3-204ENST00000462482 SIRT1Q96EB6 747 aa22.7■■□□□ 1.22
SKA3-204ENST00000462482 DHX57Q6P158 1386 aaKnown RBP22.7■■□□□ 1.22
SKA3-204ENST00000462482 RGS12O14924 1447 aa22.69■■□□□ 1.22
SKA3-204ENST00000462482 FNBP4Q8N3X1 1017 aaPredicted RBP22.69■■□□□ 1.22
SKA3-204ENST00000462482 C14orf93Q9H972 538 aaKnown RBP22.69■■□□□ 1.22
SKA3-204ENST00000462482 PLEKHH1Q9ULM0 1364 aa22.68■■□□□ 1.22
SKA3-204ENST00000462482 CFAP70Q5T0N1 1121 aa22.66■■□□□ 1.22
SKA3-204ENST00000462482 PXDNQ92626 1479 aa22.66■■□□□ 1.22
SKA3-204ENST00000462482 POGKQ9P215 609 aa22.64■■□□□ 1.21
SKA3-204ENST00000462482 MYOM2P54296 1465 aa22.64■■□□□ 1.21
SKA3-204ENST00000462482 ATAD2Q6PL18 1390 aa22.63■■□□□ 1.21
SKA3-204ENST00000462482 RAB3GAP2Q9H2M9 1393 aa22.63■■□□□ 1.21
SKA3-204ENST00000462482 HAP1P54257 671 aaPredicted RBP22.63■■□□□ 1.21
SKA3-204ENST00000462482 PSME1Q06323 249 aa22.63■■□□□ 1.21
SKA3-204ENST00000462482 KRT28Q7Z3Y7 464 aa22.63■■□□□ 1.21
SKA3-204ENST00000462482 SAFB2Q14151 953 aaKnown RBP eCLIP22.61■■□□□ 1.21
SKA3-204ENST00000462482 PRAM1Q96QH2 718 aa22.61■■□□□ 1.21
SKA3-204ENST00000462482 PHF8Q9UPP1 1060 aa22.61■■□□□ 1.21
SKA3-204ENST00000462482 COL22A1Q8NFW1 1626 aaPredicted RBP22.6■■□□□ 1.21
SKA3-204ENST00000462482 SPATA31A3Q5VYP0 1347 aa22.6■■□□□ 1.21
SKA3-204ENST00000462482 ATRNO75882 1429 aa22.6■■□□□ 1.21
SKA3-204ENST00000462482 IFT172Q9UG01 1749 aa22.6■■□□□ 1.21
SKA3-204ENST00000462482 KNDC1Q76NI1 1749 aa22.59■■□□□ 1.21
SKA3-204ENST00000462482 NRXN1Q9ULB1 1477 aa22.59■■□□□ 1.21
SKA3-204ENST00000462482 LMOD2Q6P5Q4 547 aa22.57■■□□□ 1.2
SKA3-204ENST00000462482 GJD4Q96KN9 370 aaPredicted RBP22.56■■□□□ 1.2
SKA3-204ENST00000462482 BCL9LQ86UU0 1499 aa22.54■■□□□ 1.2
SKA3-204ENST00000462482 UNC5CLQ8IV45 518 aa22.54■■□□□ 1.2
SKA3-204ENST00000462482 STAC3Q96MF2 364 aa22.54■■□□□ 1.2
SKA3-204ENST00000462482 KDM2AQ9Y2K7 1162 aa22.54■■□□□ 1.2
SKA3-204ENST00000462482 KIF1AQ12756 1690 aa22.54■■□□□ 1.2
SKA3-204ENST00000462482 DCAF11Q8TEB1 546 aa22.53■■□□□ 1.2
SKA3-204ENST00000462482 TRAK1Q9UPV9 953 aa22.53■■□□□ 1.2
SKA3-204ENST00000462482 FMN2Q9NZ56 1722 aa22.53■■□□□ 1.2
SKA3-204ENST00000462482 TNS3Q68CZ2 1445 aa22.52■■□□□ 1.2
SKA3-204ENST00000462482 PLEKHG5O94827 1062 aa22.52■■□□□ 1.2
SKA3-204ENST00000462482 ARHGEF10O15013 1369 aa22.51■■□□□ 1.19
SKA3-204ENST00000462482 SBNO1A3KN83 1393 aa22.5■■□□□ 1.19
SKA3-204ENST00000462482 EIF3AQ14152 1382 aaKnown RBP22.5■■□□□ 1.19
SKA3-204ENST00000462482 CCDC125Q86Z20 511 aa22.5■■□□□ 1.19
SKA3-204ENST00000462482 DLC1Q96QB1 1528 aa22.5■■□□□ 1.19
SKA3-204ENST00000462482 ANKARQ7Z5J8 1434 aa22.49■■□□□ 1.19
SKA3-204ENST00000462482 HRCP23327 699 aa22.49■■□□□ 1.19
SKA3-204ENST00000462482 PMFBP1Q8TBY8 1022 aa22.49■■□□□ 1.19
SKA3-204ENST00000462482 HIRIP3Q9BW71 556 aaPredicted RBP22.48■■□□□ 1.19
SKA3-204ENST00000462482 CABLES1Q8TDN4 633 aa22.47■■□□□ 1.19
SKA3-204ENST00000462482 CCDC9Q9Y3X0 531 aaKnown RBP22.47■■□□□ 1.19
SKA3-204ENST00000462482 MINK1Q8N4C8 1332 aaPredicted RBP22.47■■□□□ 1.19
SKA3-204ENST00000462482 GPRASP1Q5JY77 1395 aa22.47■■□□□ 1.19
SKA3-204ENST00000462482 SLIT2O94813 1529 aa22.46■■□□□ 1.19
SKA3-204ENST00000462482 ZRANB1Q9UGI0 708 aa22.44■■□□□ 1.18
SKA3-204ENST00000462482 RALGAPBQ86X10 1494 aa22.43■■□□□ 1.18
SKA3-204ENST00000462482 VPS72Q15906 364 aa22.43■■□□□ 1.18
SKA3-204ENST00000462482 WASLO00401 505 aaPredicted RBP22.42■■□□□ 1.18
SKA3-204ENST00000462482 NGDNQ8NEJ9 315 aaKnown RBP22.42■■□□□ 1.18
SKA3-204ENST00000462482 ADGRB1O14514 1584 aa22.42■■□□□ 1.18
SKA3-204ENST00000462482 USP32Q8NFA0 1604 aa22.41■■□□□ 1.18
SKA3-204ENST00000462482 SF3B2Q13435 895 aaKnown RBP22.39■■□□□ 1.17
SKA3-204ENST00000462482 SEPT12Q8IYM1 358 aa22.39■■□□□ 1.17
SKA3-204ENST00000462482 MARF1Q9Y4F3 1742 aaKnown RBP22.39■■□□□ 1.17
SKA3-204ENST00000462482 ADGRB2O60241 1585 aa22.38■■□□□ 1.17
SKA3-204ENST00000462482 A0A0G2JS52 829 aa22.38■■□□□ 1.17
SKA3-204ENST00000462482 PAK3O75914 559 aaPredicted RBP22.38■■□□□ 1.17
SKA3-204ENST00000462482 MYT1Q01538 1121 aa22.38■■□□□ 1.17
SKA3-204ENST00000462482 FAM83GA6ND36 823 aa22.36■■□□□ 1.17
SKA3-204ENST00000462482 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.36■■□□□ 1.17
SKA3-204ENST00000462482 TULP4Q9NRJ4 1543 aa22.36■■□□□ 1.17
SKA3-204ENST00000462482 PRR36Q9H6K5 1346 aa22.35■■□□□ 1.17
SKA3-204ENST00000462482 BLMP54132 1417 aaPredicted RBP22.34■■□□□ 1.17
SKA3-204ENST00000462482 BTG4Q9NY30 223 aa22.34■■□□□ 1.17
SKA3-204ENST00000462482 GLI3P10071 1580 aa22.33■■□□□ 1.17
SKA3-204ENST00000462482 KRT27Q7Z3Y8 459 aa22.33■■□□□ 1.17
SKA3-204ENST00000462482 ONECUT3O60422 494 aaPredicted RBP22.32■■□□□ 1.16
SKA3-204ENST00000462482 NUDT16Q96DE0 195 aaKnown RBP22.32■■□□□ 1.16
SKA3-204ENST00000462482 PRDM11Q9NQV5 511 aa22.3■■□□□ 1.16
SKA3-204ENST00000462482 RGPD8O14715 1765 aaPredicted RBP22.3■■□□□ 1.16
SKA3-204ENST00000462482 CDK19Q9BWU1 502 aa22.29■■□□□ 1.16
SKA3-204ENST00000462482 FAM98CQ17RN3 349 aaKnown RBP22.28■■□□□ 1.16
SKA3-204ENST00000462482 NWD2Q9ULI1 1742 aa22.26■■□□□ 1.15
SKA3-204ENST00000462482 CCDC61Q9Y6R9 512 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms