RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 CDK12Q9NYV4 1490 aaPredicted RBP24.03■■□□□ 1.44
COL7A1-204ENST00000462475 STK26Q9P289 416 aa24.02■■□□□ 1.44
COL7A1-204ENST00000462475 PIK3C2GO75747 1445 aa24.01■■□□□ 1.43
COL7A1-204ENST00000462475 ADAMTS2O95450 1211 aa24.01■■□□□ 1.43
COL7A1-204ENST00000462475 UPF1Q92900 1129 aaKnown RBP eCLIP24.01■■□□□ 1.43
COL7A1-204ENST00000462475 LRPPRCP42704 1394 aaKnown RBP24.01■■□□□ 1.43
COL7A1-204ENST00000462475 WAPLQ7Z5K2 1190 aa23.99■■□□□ 1.43
COL7A1-204ENST00000462475 TMEM132EQ6IEE7 984 aa23.98■■□□□ 1.43
COL7A1-204ENST00000462475 PLEKHH1Q9ULM0 1364 aa23.98■■□□□ 1.43
COL7A1-204ENST00000462475 RGS12O14924 1447 aa23.98■■□□□ 1.43
COL7A1-204ENST00000462475 ESCO1Q5FWF5 840 aa23.97■■□□□ 1.43
COL7A1-204ENST00000462475 ABCC11Q96J66 1382 aa23.97■■□□□ 1.43
COL7A1-204ENST00000462475 KNDC1Q76NI1 1749 aa23.96■■□□□ 1.43
COL7A1-204ENST00000462475 QTRT2Q9H974 415 aaKnown RBP23.96■■□□□ 1.43
COL7A1-204ENST00000462475 PXDNQ92626 1479 aa23.95■■□□□ 1.42
COL7A1-204ENST00000462475 NPHP3Q7Z494 1330 aa23.95■■□□□ 1.42
COL7A1-204ENST00000462475 NGLY1Q96IV0 654 aa23.95■■□□□ 1.42
COL7A1-204ENST00000462475 COL22A1Q8NFW1 1626 aaPredicted RBP23.95■■□□□ 1.42
COL7A1-204ENST00000462475 NUTM2FA1L443 756 aa23.94■■□□□ 1.42
COL7A1-204ENST00000462475 RBM6P78332 1123 aaKnown RBP23.94■■□□□ 1.42
COL7A1-204ENST00000462475 YTHDC2Q9H6S0 1430 aaKnown RBP23.93■■□□□ 1.42
COL7A1-204ENST00000462475 MYOM2P54296 1465 aa23.93■■□□□ 1.42
COL7A1-204ENST00000462475 XPCQ01831 940 aaPredicted RBP23.92■■□□□ 1.42
COL7A1-204ENST00000462475 FOXO3O43524 673 aa23.91■■□□□ 1.42
COL7A1-204ENST00000462475 NRXN1Q9ULB1 1477 aa23.91■■□□□ 1.42
COL7A1-204ENST00000462475 USP21Q9UK80 565 aa23.89■■□□□ 1.41
COL7A1-204ENST00000462475 RAB3GAP2Q9H2M9 1393 aa23.89■■□□□ 1.41
COL7A1-204ENST00000462475 FMN2Q9NZ56 1722 aa23.88■■□□□ 1.41
COL7A1-204ENST00000462475 ACIN1Q9UKV3 1341 aaKnown RBP23.87■■□□□ 1.41
COL7A1-204ENST00000462475 FNBP4Q8N3X1 1017 aaPredicted RBP23.87■■□□□ 1.41
COL7A1-204ENST00000462475 C14orf93Q9H972 538 aaKnown RBP23.87■■□□□ 1.41
COL7A1-204ENST00000462475 CFAP70Q5T0N1 1121 aa23.86■■□□□ 1.41
COL7A1-204ENST00000462475 ATRNO75882 1429 aa23.84■■□□□ 1.41
COL7A1-204ENST00000462475 TRPC5Q9UL62 973 aaPredicted RBP23.84■■□□□ 1.41
COL7A1-204ENST00000462475 SIRT1Q96EB6 747 aa23.83■■□□□ 1.41
COL7A1-204ENST00000462475 KIF1AQ12756 1690 aa23.82■■□□□ 1.4
COL7A1-204ENST00000462475 DHX57Q6P158 1386 aaKnown RBP23.81■■□□□ 1.4
COL7A1-204ENST00000462475 BCL9LQ86UU0 1499 aa23.8■■□□□ 1.4
COL7A1-204ENST00000462475 SAFB2Q14151 953 aaKnown RBP eCLIP23.79■■□□□ 1.4
COL7A1-204ENST00000462475 SPATA31A3Q5VYP0 1347 aa23.79■■□□□ 1.4
COL7A1-204ENST00000462475 PRAM1Q96QH2 718 aa23.78■■□□□ 1.4
COL7A1-204ENST00000462475 MARF1Q9Y4F3 1742 aaKnown RBP23.78■■□□□ 1.4
COL7A1-204ENST00000462475 DLC1Q96QB1 1528 aa23.76■■□□□ 1.39
COL7A1-204ENST00000462475 KRT28Q7Z3Y7 464 aa23.76■■□□□ 1.39
COL7A1-204ENST00000462475 ADGRB1O14514 1584 aa23.76■■□□□ 1.39
COL7A1-204ENST00000462475 ATAD2Q6PL18 1390 aa23.76■■□□□ 1.39
COL7A1-204ENST00000462475 PHF8Q9UPP1 1060 aa23.75■■□□□ 1.39
COL7A1-204ENST00000462475 TNS3Q68CZ2 1445 aa23.74■■□□□ 1.39
COL7A1-204ENST00000462475 RGPD8O14715 1765 aaPredicted RBP23.73■■□□□ 1.39
COL7A1-204ENST00000462475 USP32Q8NFA0 1604 aa23.72■■□□□ 1.39
COL7A1-204ENST00000462475 EP400Q96L91 3159 aa23.71■■□□□ 1.39
COL7A1-204ENST00000462475 SLIT2O94813 1529 aa23.71■■□□□ 1.39
COL7A1-204ENST00000462475 POGKQ9P215 609 aa23.71■■□□□ 1.39
COL7A1-204ENST00000462475 ADGRB2O60241 1585 aa23.7■■□□□ 1.38
COL7A1-204ENST00000462475 GJD4Q96KN9 370 aaPredicted RBP23.7■■□□□ 1.38
COL7A1-204ENST00000462475 ANKARQ7Z5J8 1434 aa23.69■■□□□ 1.38
COL7A1-204ENST00000462475 TRAK1Q9UPV9 953 aa23.69■■□□□ 1.38
COL7A1-204ENST00000462475 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.69■■□□□ 1.38
COL7A1-204ENST00000462475 SBNO1A3KN83 1393 aa23.68■■□□□ 1.38
COL7A1-204ENST00000462475 KDM2AQ9Y2K7 1162 aa23.68■■□□□ 1.38
COL7A1-204ENST00000462475 PSME1Q06323 249 aa23.67■■□□□ 1.38
COL7A1-204ENST00000462475 UNC5CLQ8IV45 518 aa23.67■■□□□ 1.38
COL7A1-204ENST00000462475 CABLES1Q8TDN4 633 aa23.67■■□□□ 1.38
COL7A1-204ENST00000462475 GLI3P10071 1580 aa23.66■■□□□ 1.38
COL7A1-204ENST00000462475 PLEKHG5O94827 1062 aa23.66■■□□□ 1.38
COL7A1-204ENST00000462475 PMFBP1Q8TBY8 1022 aa23.66■■□□□ 1.38
COL7A1-204ENST00000462475 DCAF11Q8TEB1 546 aa23.66■■□□□ 1.38
COL7A1-204ENST00000462475 HIRIP3Q9BW71 556 aaPredicted RBP23.66■■□□□ 1.38
COL7A1-204ENST00000462475 RALGAPBQ86X10 1494 aa23.66■■□□□ 1.38
COL7A1-204ENST00000462475 HAP1P54257 671 aaPredicted RBP23.64■■□□□ 1.37
COL7A1-204ENST00000462475 LMOD2Q6P5Q4 547 aa23.64■■□□□ 1.37
COL7A1-204ENST00000462475 MINK1Q8N4C8 1332 aaPredicted RBP23.63■■□□□ 1.37
COL7A1-204ENST00000462475 ABCA3Q99758 1704 aa23.63■■□□□ 1.37
COL7A1-204ENST00000462475 ARHGEF10O15013 1369 aa23.63■■□□□ 1.37
COL7A1-204ENST00000462475 PRR36Q9H6K5 1346 aa23.62■■□□□ 1.37
COL7A1-204ENST00000462475 TULP4Q9NRJ4 1543 aa23.61■■□□□ 1.37
COL7A1-204ENST00000462475 SRCAPQ6ZRS2 3230 aa23.61■■□□□ 1.37
COL7A1-204ENST00000462475 HRCP23327 699 aa23.6■■□□□ 1.37
COL7A1-204ENST00000462475 PLCH1Q4KWH8 1693 aa23.6■■□□□ 1.37
COL7A1-204ENST00000462475 EIF3AQ14152 1382 aaKnown RBP23.59■■□□□ 1.37
COL7A1-204ENST00000462475 TRPM3Q9HCF6 1732 aaPredicted RBP23.59■■□□□ 1.37
COL7A1-204ENST00000462475 WASLO00401 505 aaPredicted RBP23.57■■□□□ 1.36
COL7A1-204ENST00000462475 STAC3Q96MF2 364 aa23.57■■□□□ 1.36
COL7A1-204ENST00000462475 VPS72Q15906 364 aa23.56■■□□□ 1.36
COL7A1-204ENST00000462475 GPRASP1Q5JY77 1395 aa23.55■■□□□ 1.36
COL7A1-204ENST00000462475 ARHGEF28Q8N1W1 1705 aaKnown RBP23.55■■□□□ 1.36
COL7A1-204ENST00000462475 NWD2Q9ULI1 1742 aa23.55■■□□□ 1.36
COL7A1-204ENST00000462475 ALS2Q96Q42 1657 aa23.54■■□□□ 1.36
COL7A1-204ENST00000462475 FAM83GA6ND36 823 aa23.53■■□□□ 1.36
COL7A1-204ENST00000462475 CCDC125Q86Z20 511 aa23.53■■□□□ 1.36
COL7A1-204ENST00000462475 ATP7BP35670 1465 aa23.52■■□□□ 1.36
COL7A1-204ENST00000462475 SEPT12Q8IYM1 358 aa23.52■■□□□ 1.36
COL7A1-204ENST00000462475 CCDC9Q9Y3X0 531 aaKnown RBP23.52■■□□□ 1.36
COL7A1-204ENST00000462475 BRWD3Q6RI45 1802 aa23.5■■□□□ 1.35
COL7A1-204ENST00000462475 BLMP54132 1417 aaPredicted RBP23.5■■□□□ 1.35
COL7A1-204ENST00000462475 NGDNQ8NEJ9 315 aaKnown RBP23.49■■□□□ 1.35
COL7A1-204ENST00000462475 NRAPQ86VF7 1730 aa23.49■■□□□ 1.35
COL7A1-204ENST00000462475 ONECUT3O60422 494 aaPredicted RBP23.47■■□□□ 1.35
COL7A1-204ENST00000462475 BTG4Q9NY30 223 aa23.47■■□□□ 1.35
COL7A1-204ENST00000462475 NUDT16Q96DE0 195 aaKnown RBP23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms