RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 Q3C1V9 767 aa8.49□□□□□ -1.05
VPS41-210ENST00000462429 PUS10Q3MIT2 529 aaKnown RBP8.49□□□□□ -1.05
VPS41-210ENST00000462429 PCDHB3Q9Y5E6 796 aa8.49□□□□□ -1.05
VPS41-210ENST00000462429 C6orf229H3BNL8 230 aa8.48□□□□□ -1.05
VPS41-210ENST00000462429 CABLES1Q8TDN4 633 aa8.48□□□□□ -1.05
VPS41-210ENST00000462429 MYT1LQ9UL68 1186 aa8.48□□□□□ -1.05
VPS41-210ENST00000462429 NR1I2O75469 434 aa8.47□□□□□ -1.05
VPS41-210ENST00000462429 BANK1Q8NDB2 785 aa8.47□□□□□ -1.05
VPS41-210ENST00000462429 SLC27A5Q9Y2P5 690 aa8.47□□□□□ -1.05
VPS41-210ENST00000462429 PTPN5P54829 565 aa8.46□□□□□ -1.06
VPS41-210ENST00000462429 RTL5Q5HYW3 569 aaPredicted RBP8.46□□□□□ -1.06
VPS41-210ENST00000462429 FBXO31Q5XUX0 539 aaPredicted RBP8.46□□□□□ -1.06
VPS41-210ENST00000462429 AP1G2O75843 785 aa8.44□□□□□ -1.06
VPS41-210ENST00000462429 MCM6Q14566 821 aa8.44□□□□□ -1.06
VPS41-210ENST00000462429 BLOC1S3Q6QNY0 202 aa8.44□□□□□ -1.06
VPS41-210ENST00000462429 RETREG3Q86VR2 466 aa8.44□□□□□ -1.06
VPS41-210ENST00000462429 HELBQ8NG08 1087 aaPredicted RBP8.44□□□□□ -1.06
VPS41-210ENST00000462429 SALL2Q9Y467 1007 aaPredicted RBP8.44□□□□□ -1.06
VPS41-210ENST00000462429 FMNL1O95466 1100 aaPredicted RBP8.43□□□□□ -1.06
VPS41-210ENST00000462429 SCUBE3Q8IX30 993 aa8.43□□□□□ -1.06
VPS41-210ENST00000462429 SYMPKQ92797 1274 aaKnown RBP8.42□□□□□ -1.06
VPS41-210ENST00000462429 APBB1O00213 710 aa8.41□□□□□ -1.06
VPS41-210ENST00000462429 UBTFP17480 764 aaKnown RBP8.41□□□□□ -1.06
VPS41-210ENST00000462429 COPS2P61201 443 aa8.41□□□□□ -1.06
VPS41-210ENST00000462429 BRICD5Q6PL45 260 aa8.41□□□□□ -1.06
VPS41-210ENST00000462429 RNF19BQ6ZMZ0 732 aa8.41□□□□□ -1.06
VPS41-210ENST00000462429 PRR7Q8TB68 274 aa8.41□□□□□ -1.06
VPS41-210ENST00000462429 TSC1Q92574 1164 aa8.41□□□□□ -1.06
VPS41-210ENST00000462429 USB1Q9BQ65 265 aaKnown RBP8.41□□□□□ -1.06
VPS41-210ENST00000462429 CFAP99D6REC4 459 aa8.4□□□□□ -1.06
VPS41-210ENST00000462429 USP17L8P0C7I0 530 aa8.4□□□□□ -1.06
VPS41-210ENST00000462429 SOCS7O14512 581 aa8.39□□□□□ -1.07
VPS41-210ENST00000462429 SPNS2Q8IVW8 549 aa8.39□□□□□ -1.07
VPS41-210ENST00000462429 RNF166Q96A37 237 aaPredicted RBP8.39□□□□□ -1.07
VPS41-210ENST00000462429 THAP11Q96EK4 314 aa8.39□□□□□ -1.07
VPS41-210ENST00000462429 ZMYND15Q9H091 742 aa8.39□□□□□ -1.07
VPS41-210ENST00000462429 SNRKQ9NRH2 765 aa8.39□□□□□ -1.07
VPS41-210ENST00000462429 HCSTQ9UBK5 93 aa8.39□□□□□ -1.07
VPS41-210ENST00000462429 DESI1Q6ICB0 168 aa8.38□□□□□ -1.07
VPS41-210ENST00000462429 MTRQ99707 1265 aa8.38□□□□□ -1.07
VPS41-210ENST00000462429 PRM3Q9NNZ6 103 aa8.38□□□□□ -1.07
VPS41-210ENST00000462429 RAD21O60216 631 aa8.37□□□□□ -1.07
VPS41-210ENST00000462429 ZPR1O75312 459 aa8.37□□□□□ -1.07
VPS41-210ENST00000462429 CTDSPL2Q05D32 466 aa8.37□□□□□ -1.07
VPS41-210ENST00000462429 SPSB2Q99619 263 aa8.37□□□□□ -1.07
VPS41-210ENST00000462429 IL21Q9HBE4 155 aa8.37□□□□□ -1.07
VPS41-210ENST00000462429 MTMR14Q8NCE2 650 aa8.36□□□□□ -1.07
VPS41-210ENST00000462429 MSS51Q4VC12 460 aa8.35□□□□□ -1.07
VPS41-210ENST00000462429 A6NJR5 290 aa8.34□□□□□ -1.07
VPS41-210ENST00000462429 ADH1BP00325 375 aa8.34□□□□□ -1.07
VPS41-210ENST00000462429 TJAP1Q5JTD0 557 aa8.34□□□□□ -1.07
VPS41-210ENST00000462429 JUNDP17535 347 aa8.33□□□□□ -1.08
VPS41-210ENST00000462429 TLL1O43897 1013 aa8.32□□□□□ -1.08
VPS41-210ENST00000462429 LYPD8Q6UX82 237 aa8.32□□□□□ -1.08
VPS41-210ENST00000462429 LRRN4Q8WUT4 740 aa8.32□□□□□ -1.08
VPS41-210ENST00000462429 CLUAP1Q96AJ1 413 aa8.32□□□□□ -1.08
VPS41-210ENST00000462429 WWC1Q8IX03 1113 aa8.31□□□□□ -1.08
VPS41-210ENST00000462429 FAM160A2Q8N612 972 aaPredicted RBP8.31□□□□□ -1.08
VPS41-210ENST00000462429 ZNF516Q92618 1163 aa8.31□□□□□ -1.08
VPS41-210ENST00000462429 HMX1Q9NP08 348 aaPredicted RBP8.31□□□□□ -1.08
VPS41-210ENST00000462429 COG6Q9Y2V7 657 aa8.31□□□□□ -1.08
VPS41-210ENST00000462429 NDUFB9Q9Y6M9 179 aa8.31□□□□□ -1.08
VPS41-210ENST00000462429 PER1O15534 1290 aaPredicted RBP8.3□□□□□ -1.08
VPS41-210ENST00000462429 DXOO77932 396 aaKnown RBP8.3□□□□□ -1.08
VPS41-210ENST00000462429 MMP16P51512 607 aa8.3□□□□□ -1.08
VPS41-210ENST00000462429 PTPRNQ16849 979 aa8.3□□□□□ -1.08
VPS41-210ENST00000462429 POM121Q96HA1 1249 aa8.3□□□□□ -1.08
VPS41-210ENST00000462429 GJD4Q96KN9 370 aaPredicted RBP8.3□□□□□ -1.08
VPS41-210ENST00000462429 KCNC4Q03721 635 aa8.29□□□□□ -1.08
VPS41-210ENST00000462429 PROSER2Q86WR7 435 aaPredicted RBP8.29□□□□□ -1.08
VPS41-210ENST00000462429 PNMA1Q8ND90 353 aa8.29□□□□□ -1.08
VPS41-210ENST00000462429 SLC6A16Q9GZN6 736 aa8.29□□□□□ -1.08
VPS41-210ENST00000462429 GDPD2Q9HCC8 539 aa8.29□□□□□ -1.08
VPS41-210ENST00000462429 TRIM34Q9BYJ4 488 aa8.28□□□□□ -1.08
VPS41-210ENST00000462429 PRDM9Q9NQV7 894 aa8.28□□□□□ -1.08
VPS41-210ENST00000462429 ITGBL1O95965 494 aaPredicted RBP8.27□□□□□ -1.09
VPS41-210ENST00000462429 CCNYL3P0C7X3 344 aa8.27□□□□□ -1.09
VPS41-210ENST00000462429 MMRN1Q13201 1228 aa8.27□□□□□ -1.09
VPS41-210ENST00000462429 NUDT12Q9BQG2 462 aa8.27□□□□□ -1.09
VPS41-210ENST00000462429 TBC1D2BQ9UPU7 963 aa8.27□□□□□ -1.09
VPS41-210ENST00000462429 TRAK2O60296 914 aa8.26□□□□□ -1.09
VPS41-210ENST00000462429 ABL2P42684 1182 aa8.26□□□□□ -1.09
VPS41-210ENST00000462429 NR6A1Q15406 480 aa8.26□□□□□ -1.09
VPS41-210ENST00000462429 NKX2-3Q8TAU0 364 aa8.26□□□□□ -1.09
VPS41-210ENST00000462429 SUPT5HO00267 1087 aaKnown RBP8.25□□□□□ -1.09
VPS41-210ENST00000462429 F12P00748 615 aaPredicted RBP8.25□□□□□ -1.09
VPS41-210ENST00000462429 CTHP32929 405 aa8.25□□□□□ -1.09
VPS41-210ENST00000462429 EVA1BQ9NVM1 165 aa8.25□□□□□ -1.09
VPS41-210ENST00000462429 S1PR4O95977 384 aa8.24□□□□□ -1.09
VPS41-210ENST00000462429 FNBP4Q8N3X1 1017 aaPredicted RBP8.24□□□□□ -1.09
VPS41-210ENST00000462429 EPS8L1Q8TE68 723 aa8.24□□□□□ -1.09
VPS41-210ENST00000462429 GGCXP38435 758 aa8.23□□□□□ -1.09
VPS41-210ENST00000462429 KCNH2Q12809 1159 aa8.23□□□□□ -1.09
VPS41-210ENST00000462429 CCDC24Q8N4L8 307 aa8.23□□□□□ -1.09
VPS41-210ENST00000462429 MAP10Q9P2G4 905 aa8.23□□□□□ -1.09
VPS41-210ENST00000462429 ARMC2Q8NEN0 867 aa8.22□□□□□ -1.09
VPS41-210ENST00000462429 ZNF330Q9Y3S2 320 aaPredicted RBP8.22□□□□□ -1.09
VPS41-210ENST00000462429 WASHC4Q2M389 1173 aa8.21□□□□□ -1.1
VPS41-210ENST00000462429 FKBPLQ9UIM3 349 aa8.21□□□□□ -1.1
VPS41-210ENST00000462429 ZC3H4Q9UPT8 1303 aaKnown RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms