RNA–Protein interactions for RNA: ENST00000460801.5

PTPRN-210, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 2

Gene PTPRN, Length 2,239 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-210ENST00000460801 SAFB2Q14151 953 aaKnown RBP eCLIP18.5■□□□□ 0.55
PTPRN-210ENST00000460801 CABP2Q9NPB3 220 aa18.5■□□□□ 0.55
PTPRN-210ENST00000460801 RCAN3Q9UKA8 241 aa18.5■□□□□ 0.55
PTPRN-210ENST00000460801 POLR3AO14802 1390 aaPredicted RBP18.5■□□□□ 0.55
PTPRN-210ENST00000460801 NINLQ9Y2I6 1382 aa18.49■□□□□ 0.55
PTPRN-210ENST00000460801 PRAM1Q96QH2 718 aa18.49■□□□□ 0.55
PTPRN-210ENST00000460801 ESF1Q9H501 851 aaKnown RBP18.49■□□□□ 0.55
PTPRN-210ENST00000460801 CGNL1Q0VF96 1302 aa18.48■□□□□ 0.55
PTPRN-210ENST00000460801 MORC1Q86VD1 984 aa18.48■□□□□ 0.55
PTPRN-210ENST00000460801 PLEKHH1Q9ULM0 1364 aa18.48■□□□□ 0.55
PTPRN-210ENST00000460801 ZNF521Q96K83 1311 aa18.47■□□□□ 0.55
PTPRN-210ENST00000460801 SETD1AO15047 1707 aaKnown RBP18.47■□□□□ 0.55
PTPRN-210ENST00000460801 B4GALNT3Q6L9W6 998 aa18.47■□□□□ 0.55
PTPRN-210ENST00000460801 RRP1P56182 461 aaKnown RBP18.46■□□□□ 0.55
PTPRN-210ENST00000460801 POGKQ9P215 609 aa18.46■□□□□ 0.55
PTPRN-210ENST00000460801 DLC1Q96QB1 1528 aa18.45■□□□□ 0.54
PTPRN-210ENST00000460801 NSD2O96028 1365 aa18.45■□□□□ 0.54
PTPRN-210ENST00000460801 ATAD2Q6PL18 1390 aa18.45■□□□□ 0.54
PTPRN-210ENST00000460801 SRPK2P78362 688 aaKnown RBP18.45■□□□□ 0.54
PTPRN-210ENST00000460801 MINK1Q8N4C8 1332 aaPredicted RBP18.44■□□□□ 0.54
PTPRN-210ENST00000460801 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.43■□□□□ 0.54
PTPRN-210ENST00000460801 NRXN3Q9Y4C0 1643 aa18.43■□□□□ 0.54
PTPRN-210ENST00000460801 A0A1W2PP64 1363 aa18.42■□□□□ 0.54
PTPRN-210ENST00000460801 TNRQ92752 1358 aa18.42■□□□□ 0.54
PTPRN-210ENST00000460801 ABCC11Q96J66 1382 aa18.42■□□□□ 0.54
PTPRN-210ENST00000460801 SHPRHQ149N8 1683 aa18.41■□□□□ 0.54
PTPRN-210ENST00000460801 CCDC146Q8IYE0 955 aa18.41■□□□□ 0.54
PTPRN-210ENST00000460801 NGEFQ8N5V2 710 aa18.4■□□□□ 0.54
PTPRN-210ENST00000460801 CD163L1Q9NR16 1453 aa18.4■□□□□ 0.54
PTPRN-210ENST00000460801 TNNT2P45379 298 aaPredicted RBP18.39■□□□□ 0.54
PTPRN-210ENST00000460801 GOLGA2Q08379 1002 aa18.39■□□□□ 0.54
PTPRN-210ENST00000460801 DUSP27Q5VZP5 1158 aa18.39■□□□□ 0.54
PTPRN-210ENST00000460801 CDK19Q9BWU1 502 aa18.39■□□□□ 0.54
PTPRN-210ENST00000460801 APAF1O14727 1248 aa18.39■□□□□ 0.53
PTPRN-210ENST00000460801 TERF2IPQ9NYB0 399 aa18.38■□□□□ 0.53
PTPRN-210ENST00000460801 MTHFSP49914 203 aa18.38■□□□□ 0.53
PTPRN-210ENST00000460801 HDGFP51858 240 aaKnown RBP18.38■□□□□ 0.53
PTPRN-210ENST00000460801 SLFN5Q08AF3 891 aa18.37■□□□□ 0.53
PTPRN-210ENST00000460801 TRMT2AQ8IZ69 625 aaKnown RBP18.37■□□□□ 0.53
PTPRN-210ENST00000460801 CCDC136Q96JN2 1154 aa18.37■□□□□ 0.53
PTPRN-210ENST00000460801 UBR1Q8IWV7 1749 aa18.37■□□□□ 0.53
PTPRN-210ENST00000460801 WAPLQ7Z5K2 1190 aa18.36■□□□□ 0.53
PTPRN-210ENST00000460801 RBM19Q9Y4C8 960 aaKnown RBP18.35■□□□□ 0.53
PTPRN-210ENST00000460801 METP08581 1390 aa18.35■□□□□ 0.53
PTPRN-210ENST00000460801 MED14O60244 1454 aa18.35■□□□□ 0.53
PTPRN-210ENST00000460801 TMEM2Q9UHN6 1383 aa18.35■□□□□ 0.53
PTPRN-210ENST00000460801 CFAP53Q96M91 514 aa18.34■□□□□ 0.53
PTPRN-210ENST00000460801 NLRP1Q9C000 1473 aa18.34■□□□□ 0.53
PTPRN-210ENST00000460801 ANKRD26Q9UPS8 1709 aa18.34■□□□□ 0.53
PTPRN-210ENST00000460801 EXOC6Q8TAG9 804 aa18.33■□□□□ 0.53
PTPRN-210ENST00000460801 FYB1O15117 783 aa18.33■□□□□ 0.52
PTPRN-210ENST00000460801 HDGFL2Q7Z4V5 671 aaPredicted RBP18.33■□□□□ 0.52
PTPRN-210ENST00000460801 SIRT1Q96EB6 747 aa18.33■□□□□ 0.52
PTPRN-210ENST00000460801 TECPR2O15040 1411 aa18.32■□□□□ 0.52
PTPRN-210ENST00000460801 KNDC1Q76NI1 1749 aa18.32■□□□□ 0.52
PTPRN-210ENST00000460801 CABP1Q9NZU7 370 aa18.32■□□□□ 0.52
PTPRN-210ENST00000460801 FAM135BQ49AJ0 1406 aa18.31■□□□□ 0.52
PTPRN-210ENST00000460801 RUNDC1Q96C34 613 aa18.31■□□□□ 0.52
PTPRN-210ENST00000460801 GGNBP2Q9H3C7 697 aa18.31■□□□□ 0.52
PTPRN-210ENST00000460801 SPINK5Q9NQ38 1064 aaPredicted RBP18.3■□□□□ 0.52
PTPRN-210ENST00000460801 ATP7BP35670 1465 aa18.3■□□□□ 0.52
PTPRN-210ENST00000460801 IQSEC2Q5JU85 1478 aa18.29■□□□□ 0.52
PTPRN-210ENST00000460801 E9PSI1 815 aa18.29■□□□□ 0.52
PTPRN-210ENST00000460801 PLIN1O60240 522 aa18.29■□□□□ 0.52
PTPRN-210ENST00000460801 CPS1P31327 1500 aa18.28■□□□□ 0.52
PTPRN-210ENST00000460801 WASLO00401 505 aaPredicted RBP18.28■□□□□ 0.52
PTPRN-210ENST00000460801 TXNDC2Q86VQ3 553 aa18.28■□□□□ 0.52
PTPRN-210ENST00000460801 WWC1Q8IX03 1113 aa18.27■□□□□ 0.52
PTPRN-210ENST00000460801 NKTRP30414 1462 aaKnown RBP18.27■□□□□ 0.52
PTPRN-210ENST00000460801 KIF20BQ96Q89 1820 aa18.27■□□□□ 0.52
PTPRN-210ENST00000460801 ADAMTS13Q76LX8 1427 aa18.27■□□□□ 0.51
PTPRN-210ENST00000460801 PHF23Q9BUL5 403 aaPredicted RBP18.26■□□□□ 0.51
PTPRN-210ENST00000460801 DMRT2Q9Y5R5 561 aa18.26■□□□□ 0.51
PTPRN-210ENST00000460801 CEBPAP49715 358 aaPredicted RBP18.26■□□□□ 0.51
PTPRN-210ENST00000460801 TCP11L2Q8N4U5 519 aa18.26■□□□□ 0.51
PTPRN-210ENST00000460801 C3P01024 1663 aa18.25■□□□□ 0.51
PTPRN-210ENST00000460801 COL3A1P02461 1466 aaPredicted RBP18.25■□□□□ 0.51
PTPRN-210ENST00000460801 PLEKHG1Q9ULL1 1385 aa18.25■□□□□ 0.51
PTPRN-210ENST00000460801 NCBP3Q53F19 620 aaKnown RBP18.25■□□□□ 0.51
PTPRN-210ENST00000460801 LTKP29376 864 aa18.24■□□□□ 0.51
PTPRN-210ENST00000460801 CPSF1Q10570 1443 aaKnown RBP18.24■□□□□ 0.51
PTPRN-210ENST00000460801 CCDC27Q2M243 656 aa18.23■□□□□ 0.51
PTPRN-210ENST00000460801 CRBNQ96SW2 442 aa18.23■□□□□ 0.51
PTPRN-210ENST00000460801 U2AF1L5P0DN76 240 aaPredicted RBP18.22■□□□□ 0.51
PTPRN-210ENST00000460801 U2AF1Q01081 240 aaKnown RBP eCLIP18.22■□□□□ 0.51
PTPRN-210ENST00000460801 FER1L4A9Z1Z3 1794 aa18.22■□□□□ 0.51
PTPRN-210ENST00000460801 PPIP5K1Q6PFW1 1433 aa18.22■□□□□ 0.51
PTPRN-210ENST00000460801 DNAJC5Q9H3Z4 198 aa18.22■□□□□ 0.51
PTPRN-210ENST00000460801 PNPLA6Q8IY17 1366 aa18.22■□□□□ 0.51
PTPRN-210ENST00000460801 ADGRB2O60241 1585 aa18.21■□□□□ 0.51
PTPRN-210ENST00000460801 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.21■□□□□ 0.51
PTPRN-210ENST00000460801 SLIT1O75093 1534 aa18.21■□□□□ 0.5
PTPRN-210ENST00000460801 C20orf194Q5TEA3 1177 aa18.21■□□□□ 0.5
PTPRN-210ENST00000460801 WDR63Q8IWG1 891 aa18.21■□□□□ 0.5
PTPRN-210ENST00000460801 NUDT16Q96DE0 195 aaKnown RBP18.21■□□□□ 0.5
PTPRN-210ENST00000460801 RRP7AQ9Y3A4 280 aaKnown RBP18.21■□□□□ 0.5
PTPRN-210ENST00000460801 ROBO2Q9HCK4 1378 aa18.2■□□□□ 0.5
PTPRN-210ENST00000460801 ARHGAP23Q9P227 1491 aa18.2■□□□□ 0.5
PTPRN-210ENST00000460801 EDC4Q6P2E9 1401 aaKnown RBP18.2■□□□□ 0.5
PTPRN-210ENST00000460801 NEUROD2Q15784 382 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms