RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 NEURL4Q96JN8 1562 aa7.85□□□□□ -1.15
VPS13D-202ENST00000460333 FBXO31Q5XUX0 539 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-202ENST00000460333 ATAD2Q6PL18 1390 aa7.85□□□□□ -1.15
VPS13D-202ENST00000460333 HSCBQ8IWL3 235 aa7.85□□□□□ -1.15
VPS13D-202ENST00000460333 CEP152O94986 1710 aa7.85□□□□□ -1.15
VPS13D-202ENST00000460333 DIP2CQ9Y2E4 1556 aa7.85□□□□□ -1.15
VPS13D-202ENST00000460333 MAP3K4Q9Y6R4 1608 aa7.85□□□□□ -1.15
VPS13D-202ENST00000460333 MINK1Q8N4C8 1332 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-202ENST00000460333 TSPOAP1O95153 1857 aa7.85□□□□□ -1.15
VPS13D-202ENST00000460333 NINLQ9Y2I6 1382 aa7.85□□□□□ -1.15
VPS13D-202ENST00000460333 GBP4Q96PP9 640 aa7.84□□□□□ -1.15
VPS13D-202ENST00000460333 MYH16Q9H6N6 1097 aa7.84□□□□□ -1.15
VPS13D-202ENST00000460333 ANO8Q9HCE9 1232 aaPredicted RBP7.84□□□□□ -1.15
VPS13D-202ENST00000460333 ABCA6Q8N139 1617 aa7.84□□□□□ -1.15
VPS13D-202ENST00000460333 DIP2BQ9P265 1576 aa7.84□□□□□ -1.15
VPS13D-202ENST00000460333 PPP2R1AP30153 589 aa7.84□□□□□ -1.15
VPS13D-202ENST00000460333 ZC3H13Q5T200 1668 aaKnown RBP7.84□□□□□ -1.15
VPS13D-202ENST00000460333 TNRQ92752 1358 aa7.84□□□□□ -1.16
VPS13D-202ENST00000460333 POLR1AO95602 1720 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-202ENST00000460333 THEMISQ8N1K5 641 aaPredicted RBP7.83□□□□□ -1.16
VPS13D-202ENST00000460333 PRAM1Q96QH2 718 aa7.83□□□□□ -1.16
VPS13D-202ENST00000460333 SBNO2Q9Y2G9 1366 aa7.83□□□□□ -1.16
VPS13D-202ENST00000460333 MAPK8IP3Q9UPT6 1336 aa7.83□□□□□ -1.16
VPS13D-202ENST00000460333 PPRC1Q5VV67 1664 aaKnown RBP7.83□□□□□ -1.16
VPS13D-202ENST00000460333 CCDC184Q52MB2 194 aa7.83□□□□□ -1.16
VPS13D-202ENST00000460333 PARD3Q8TEW0 1356 aa7.83□□□□□ -1.16
VPS13D-202ENST00000460333 CFAP44Q96MT7 982 aa7.83□□□□□ -1.16
VPS13D-202ENST00000460333 ZMYM4Q5VZL5 1548 aa7.82□□□□□ -1.16
VPS13D-202ENST00000460333 MADDQ8WXG6 1647 aa7.82□□□□□ -1.16
VPS13D-202ENST00000460333 HSP90AB1P08238 724 aaKnown RBP7.82□□□□□ -1.16
VPS13D-202ENST00000460333 RGS3P49796 1198 aa7.82□□□□□ -1.16
VPS13D-202ENST00000460333 ZMYM3Q14202 1370 aa7.82□□□□□ -1.16
VPS13D-202ENST00000460333 CAMSAP1Q5T5Y3 1602 aa7.82□□□□□ -1.16
VPS13D-202ENST00000460333 FAM43AQ8N2R8 423 aa7.82□□□□□ -1.16
VPS13D-202ENST00000460333 UBE2Q2Q8WVN8 375 aa7.82□□□□□ -1.16
VPS13D-202ENST00000460333 AGLP35573 1532 aa7.82□□□□□ -1.16
VPS13D-202ENST00000460333 NPC1L1Q9UHC9 1359 aa7.82□□□□□ -1.16
VPS13D-202ENST00000460333 ADGRB3O60242 1522 aa7.82□□□□□ -1.16
VPS13D-202ENST00000460333 CABP2Q9NPB3 220 aa7.82□□□□□ -1.16
VPS13D-202ENST00000460333 UGGT1Q9NYU2 1555 aa7.81□□□□□ -1.16
VPS13D-202ENST00000460333 CFAP65Q6ZU64 1925 aaKnown RBP7.81□□□□□ -1.16
VPS13D-202ENST00000460333 ASXL1Q8IXJ9 1541 aa7.81□□□□□ -1.16
VPS13D-202ENST00000460333 TXNDC2Q86VQ3 553 aa7.81□□□□□ -1.16
VPS13D-202ENST00000460333 RIMS2Q9UQ26 1411 aa7.81□□□□□ -1.16
VPS13D-202ENST00000460333 ZFYVE9O95405 1425 aa7.81□□□□□ -1.16
VPS13D-202ENST00000460333 MAP7D2Q96T17 732 aa7.81□□□□□ -1.16
VPS13D-202ENST00000460333 RCAN3Q9UKA8 241 aa7.81□□□□□ -1.16
VPS13D-202ENST00000460333 NSD2O96028 1365 aa7.81□□□□□ -1.16
VPS13D-202ENST00000460333 PER1O15534 1290 aaPredicted RBP7.81□□□□□ -1.16
VPS13D-202ENST00000460333 GOLGA2Q08379 1002 aa7.81□□□□□ -1.16
VPS13D-202ENST00000460333 CASC1Q6TDU7 716 aa7.81□□□□□ -1.16
VPS13D-202ENST00000460333 SLC12A5Q9H2X9 1139 aa7.81□□□□□ -1.16
VPS13D-202ENST00000460333 CHMP4BQ9H444 224 aaKnown RBP7.81□□□□□ -1.16
VPS13D-202ENST00000460333 PIK3C2GO75747 1445 aa7.81□□□□□ -1.16
VPS13D-202ENST00000460333 KIAA1210Q9ULL0 1709 aa7.81□□□□□ -1.16
VPS13D-202ENST00000460333 ERVK-7P63135 1459 aa7.8□□□□□ -1.16
VPS13D-202ENST00000460333 BCORL1Q5H9F3 1711 aa7.8□□□□□ -1.16
VPS13D-202ENST00000460333 U2SURPO15042 1029 aaKnown RBP7.8□□□□□ -1.16
VPS13D-202ENST00000460333 PDE4AP27815 886 aa7.8□□□□□ -1.16
VPS13D-202ENST00000460333 SMG6Q86US8 1419 aaKnown RBP7.8□□□□□ -1.16
VPS13D-202ENST00000460333 KDM5AP29375 1690 aaKnown RBP7.8□□□□□ -1.16
VPS13D-202ENST00000460333 DDX11L8A8MPP1 907 aa7.79□□□□□ -1.16
VPS13D-202ENST00000460333 CDK19Q9BWU1 502 aa7.79□□□□□ -1.16
VPS13D-202ENST00000460333 CCDC9Q9Y3X0 531 aaKnown RBP7.79□□□□□ -1.16
VPS13D-202ENST00000460333 NSD3Q9BZ95 1437 aa7.79□□□□□ -1.16
VPS13D-202ENST00000460333 MROH1Q8NDA8 1641 aa7.79□□□□□ -1.16
VPS13D-202ENST00000460333 MTERF4Q7Z6M4 381 aaKnown RBP7.79□□□□□ -1.16
VPS13D-202ENST00000460333 FRMPD1Q5SYB0 1578 aa7.79□□□□□ -1.16
VPS13D-202ENST00000460333 U2AF1L5P0DN76 240 aaPredicted RBP7.79□□□□□ -1.16
VPS13D-202ENST00000460333 U2AF1Q01081 240 aaKnown RBP eCLIP7.79□□□□□ -1.164e-7■■■□□ 17.5
VPS13D-202ENST00000460333 RICTORQ6R327 1708 aa7.79□□□□□ -1.16
VPS13D-202ENST00000460333 SETBP1Q9Y6X0 1596 aa7.79□□□□□ -1.16
VPS13D-202ENST00000460333 INSRP06213 1382 aa7.79□□□□□ -1.16
VPS13D-202ENST00000460333 AMER1Q5JTC6 1135 aaPredicted RBP7.78□□□□□ -1.16
VPS13D-202ENST00000460333 SYNMO15061 1565 aa7.78□□□□□ -1.16
VPS13D-202ENST00000460333 GOLGA6L6A8MZA4 724 aa7.78□□□□□ -1.16
VPS13D-202ENST00000460333 KIAA2012Q0VF49 1180 aa7.78□□□□□ -1.16
VPS13D-202ENST00000460333 PHF23Q9BUL5 403 aaPredicted RBP7.78□□□□□ -1.16
VPS13D-202ENST00000460333 ADAMTS8Q9UP79 889 aa7.78□□□□□ -1.16
VPS13D-202ENST00000460333 SENP3-EIF4A1A0A087X0R7 540 aa7.78□□□□□ -1.16
VPS13D-202ENST00000460333 TPM2P07951 284 aa7.78□□□□□ -1.16
VPS13D-202ENST00000460333 YTHDC2Q9H6S0 1430 aaKnown RBP7.78□□□□□ -1.16
VPS13D-202ENST00000460333 ZNF692Q9BU19 519 aaPredicted RBP7.77□□□□□ -1.16
VPS13D-202ENST00000460333 ANKRD36BQ8N2N9 1353 aa7.77□□□□□ -1.17
VPS13D-202ENST00000460333 COG3Q96JB2 828 aa7.77□□□□□ -1.17
VPS13D-202ENST00000460333 MEX3CQ5U5Q3 659 aaKnown RBP7.77□□□□□ -1.17
VPS13D-202ENST00000460333 RUNDC1Q96C34 613 aa7.77□□□□□ -1.17
VPS13D-202ENST00000460333 REREQ9P2R6 1566 aa7.77□□□□□ -1.17
VPS13D-202ENST00000460333 E9PSI1 815 aa7.77□□□□□ -1.17
VPS13D-202ENST00000460333 CALD1Q05682 793 aaKnown RBP7.77□□□□□ -1.17
VPS13D-202ENST00000460333 NEUROD2Q15784 382 aa7.77□□□□□ -1.17
VPS13D-202ENST00000460333 SKOR2Q2VWA4 1001 aaPredicted RBP7.77□□□□□ -1.17
VPS13D-202ENST00000460333 LRPPRCP42704 1394 aaKnown RBP7.76□□□□□ -1.17
VPS13D-202ENST00000460333 ARHGEF40Q8TER5 1519 aa7.76□□□□□ -1.17
VPS13D-202ENST00000460333 FAM161AQ3B820 660 aa7.76□□□□□ -1.17
VPS13D-202ENST00000460333 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.76□□□□□ -1.17
VPS13D-202ENST00000460333 NRDCO43847 1150 aa7.76□□□□□ -1.17
VPS13D-202ENST00000460333 PODXL2Q9NZ53 605 aa7.76□□□□□ -1.17
VPS13D-202ENST00000460333 NRXN1Q9ULB1 1477 aa7.76□□□□□ -1.17
VPS13D-202ENST00000460333 RRP9O43818 475 aaKnown RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms