RNA–Protein interactions for RNA: ENST00000459927.5

GPNMB-204, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-204ENST00000459927 STK26Q9P289 416 aa18.47■□□□□ 0.55
GPNMB-204ENST00000459927 USP21Q9UK80 565 aa18.47■□□□□ 0.55
GPNMB-204ENST00000459927 FOXO3O43524 673 aa18.45■□□□□ 0.54
GPNMB-204ENST00000459927 TMEM132EQ6IEE7 984 aa18.45■□□□□ 0.54
GPNMB-204ENST00000459927 PRAG1Q86YV5 1406 aa18.45■□□□□ 0.54
GPNMB-204ENST00000459927 TRPC5Q9UL62 973 aaPredicted RBP18.44■□□□□ 0.54
GPNMB-204ENST00000459927 LAMC1P11047 1609 aa18.43■□□□□ 0.54
GPNMB-204ENST00000459927 NPHP3Q7Z494 1330 aa18.42■□□□□ 0.54
GPNMB-204ENST00000459927 PPLO60437 1756 aa18.42■□□□□ 0.54
GPNMB-204ENST00000459927 NUTM2FA1L443 756 aa18.41■□□□□ 0.54
GPNMB-204ENST00000459927 ABCC11Q96J66 1382 aa18.41■□□□□ 0.54
GPNMB-204ENST00000459927 XPCQ01831 940 aaPredicted RBP18.4■□□□□ 0.54
GPNMB-204ENST00000459927 SIRT1Q96EB6 747 aa18.4■□□□□ 0.54
GPNMB-204ENST00000459927 ANKRD30BQ9BXX2 1392 aa18.4■□□□□ 0.54
GPNMB-204ENST00000459927 RGS12O14924 1447 aa18.4■□□□□ 0.54
GPNMB-204ENST00000459927 LRPPRCP42704 1394 aaKnown RBP18.39■□□□□ 0.53
GPNMB-204ENST00000459927 CCDC144AA2RUR9 1427 aa18.39■□□□□ 0.53
GPNMB-204ENST00000459927 SPATA31E1Q6ZUB1 1445 aa18.39■□□□□ 0.53
GPNMB-204ENST00000459927 C14orf93Q9H972 538 aaKnown RBP18.38■□□□□ 0.53
GPNMB-204ENST00000459927 PLEKHH1Q9ULM0 1364 aa18.35■□□□□ 0.53
GPNMB-204ENST00000459927 KRT28Q7Z3Y7 464 aa18.35■□□□□ 0.53
GPNMB-204ENST00000459927 TECPR2O15040 1411 aa18.34■□□□□ 0.53
GPNMB-204ENST00000459927 GJD4Q96KN9 370 aaPredicted RBP18.34■□□□□ 0.53
GPNMB-204ENST00000459927 BCL9LQ86UU0 1499 aa18.33■□□□□ 0.53
GPNMB-204ENST00000459927 ATRNO75882 1429 aa18.33■□□□□ 0.53
GPNMB-204ENST00000459927 ACIN1Q9UKV3 1341 aaKnown RBP18.33■□□□□ 0.53
GPNMB-204ENST00000459927 CFAP70Q5T0N1 1121 aa18.33■□□□□ 0.52
GPNMB-204ENST00000459927 PXDNQ92626 1479 aa18.33■□□□□ 0.52
GPNMB-204ENST00000459927 SPATA31A3Q5VYP0 1347 aa18.32■□□□□ 0.52
GPNMB-204ENST00000459927 ATAD2Q6PL18 1390 aa18.31■□□□□ 0.52
GPNMB-204ENST00000459927 COL22A1Q8NFW1 1626 aaPredicted RBP18.31■□□□□ 0.52
GPNMB-204ENST00000459927 MYOM2P54296 1465 aa18.31■□□□□ 0.52
GPNMB-204ENST00000459927 YTHDC2Q9H6S0 1430 aaKnown RBP18.31■□□□□ 0.52
GPNMB-204ENST00000459927 CDC42BPGQ6DT37 1551 aa18.3■□□□□ 0.52
GPNMB-204ENST00000459927 CCDC125Q86Z20 511 aa18.3■□□□□ 0.52
GPNMB-204ENST00000459927 UNC5CLQ8IV45 518 aa18.3■□□□□ 0.52
GPNMB-204ENST00000459927 PSME1Q06323 249 aa18.29■□□□□ 0.52
GPNMB-204ENST00000459927 PHF8Q9UPP1 1060 aa18.29■□□□□ 0.52
GPNMB-204ENST00000459927 PIK3C2GO75747 1445 aa18.29■□□□□ 0.52
GPNMB-204ENST00000459927 DHX57Q6P158 1386 aaKnown RBP18.29■□□□□ 0.52
GPNMB-204ENST00000459927 PRAM1Q96QH2 718 aa18.26■□□□□ 0.51
GPNMB-204ENST00000459927 SAFB2Q14151 953 aaKnown RBP eCLIP18.25■□□□□ 0.51
GPNMB-204ENST00000459927 CABLES1Q8TDN4 633 aa18.25■□□□□ 0.51
GPNMB-204ENST00000459927 IFT172Q9UG01 1749 aa18.25■□□□□ 0.51
GPNMB-204ENST00000459927 ZRANB1Q9UGI0 708 aa18.24■□□□□ 0.51
GPNMB-204ENST00000459927 POGKQ9P215 609 aa18.23■□□□□ 0.51
GPNMB-204ENST00000459927 ONECUT3O60422 494 aaPredicted RBP18.22■□□□□ 0.51
GPNMB-204ENST00000459927 MARF1Q9Y4F3 1742 aaKnown RBP18.21■□□□□ 0.51
GPNMB-204ENST00000459927 PLEKHG5O94827 1062 aa18.21■□□□□ 0.51
GPNMB-204ENST00000459927 HAP1P54257 671 aaPredicted RBP18.21■□□□□ 0.51
GPNMB-204ENST00000459927 LMOD2Q6P5Q4 547 aa18.21■□□□□ 0.51
GPNMB-204ENST00000459927 PMFBP1Q8TBY8 1022 aa18.21■□□□□ 0.51
GPNMB-204ENST00000459927 SLIT2O94813 1529 aa18.21■□□□□ 0.51
GPNMB-204ENST00000459927 KNDC1Q76NI1 1749 aa18.2■□□□□ 0.5
GPNMB-204ENST00000459927 FMN2Q9NZ56 1722 aa18.2■□□□□ 0.5
GPNMB-204ENST00000459927 NRXN1Q9ULB1 1477 aa18.2■□□□□ 0.5
GPNMB-204ENST00000459927 RGPD8O14715 1765 aaPredicted RBP18.2■□□□□ 0.5
GPNMB-204ENST00000459927 FAM83GA6ND36 823 aa18.2■□□□□ 0.5
GPNMB-204ENST00000459927 VPS72Q15906 364 aa18.2■□□□□ 0.5
GPNMB-204ENST00000459927 SEPT12Q8IYM1 358 aa18.19■□□□□ 0.5
GPNMB-204ENST00000459927 KDM2AQ9Y2K7 1162 aa18.19■□□□□ 0.5
GPNMB-204ENST00000459927 SBNO1A3KN83 1393 aa18.18■□□□□ 0.5
GPNMB-204ENST00000459927 TRAK1Q9UPV9 953 aa18.18■□□□□ 0.5
GPNMB-204ENST00000459927 RALGAPBQ86X10 1494 aa18.17■□□□□ 0.5
GPNMB-204ENST00000459927 DCAF11Q8TEB1 546 aa18.16■□□□□ 0.5
GPNMB-204ENST00000459927 KIF1AQ12756 1690 aa18.15■□□□□ 0.5
GPNMB-204ENST00000459927 STAC3Q96MF2 364 aa18.15■□□□□ 0.5
GPNMB-204ENST00000459927 HIRIP3Q9BW71 556 aaPredicted RBP18.15■□□□□ 0.5
GPNMB-204ENST00000459927 CCDC9Q9Y3X0 531 aaKnown RBP18.15■□□□□ 0.5
GPNMB-204ENST00000459927 RAB3GAP2Q9H2M9 1393 aa18.15■□□□□ 0.5
GPNMB-204ENST00000459927 TNS3Q68CZ2 1445 aa18.15■□□□□ 0.5
GPNMB-204ENST00000459927 GLI3P10071 1580 aa18.13■□□□□ 0.49
GPNMB-204ENST00000459927 WASLO00401 505 aaPredicted RBP18.13■□□□□ 0.49
GPNMB-204ENST00000459927 MINK1Q8N4C8 1332 aaPredicted RBP18.13■□□□□ 0.49
GPNMB-204ENST00000459927 ARHGEF10O15013 1369 aa18.13■□□□□ 0.49
GPNMB-204ENST00000459927 EP400Q96L91 3159 aa18.13■□□□□ 0.49
GPNMB-204ENST00000459927 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.12■□□□□ 0.49
GPNMB-204ENST00000459927 SRCAPQ6ZRS2 3230 aa18.12■□□□□ 0.49
GPNMB-204ENST00000459927 HRCP23327 699 aa18.12■□□□□ 0.49
GPNMB-204ENST00000459927 KRT27Q7Z3Y8 459 aa18.12■□□□□ 0.49
GPNMB-204ENST00000459927 DEFB132Q7Z7B7 95 aa18.12■□□□□ 0.49
GPNMB-204ENST00000459927 PRR36Q9H6K5 1346 aa18.11■□□□□ 0.49
GPNMB-204ENST00000459927 ANKARQ7Z5J8 1434 aa18.11■□□□□ 0.49
GPNMB-204ENST00000459927 DLC1Q96QB1 1528 aa18.11■□□□□ 0.49
GPNMB-204ENST00000459927 USP32Q8NFA0 1604 aa18.1■□□□□ 0.49
GPNMB-204ENST00000459927 BLMP54132 1417 aaPredicted RBP18.1■□□□□ 0.49
GPNMB-204ENST00000459927 SF3B2Q13435 895 aaKnown RBP18.1■□□□□ 0.49
GPNMB-204ENST00000459927 BTG4Q9NY30 223 aa18.1■□□□□ 0.49
GPNMB-204ENST00000459927 GPRASP1Q5JY77 1395 aa18.09■□□□□ 0.49
GPNMB-204ENST00000459927 NGDNQ8NEJ9 315 aaKnown RBP18.09■□□□□ 0.49
GPNMB-204ENST00000459927 BRWD3Q6RI45 1802 aa18.08■□□□□ 0.48
GPNMB-204ENST00000459927 ADGRB1O14514 1584 aa18.07■□□□□ 0.48
GPNMB-204ENST00000459927 PAK3O75914 559 aaPredicted RBP18.06■□□□□ 0.48
GPNMB-204ENST00000459927 FAM98CQ17RN3 349 aaKnown RBP18.06■□□□□ 0.48
GPNMB-204ENST00000459927 NUDT16Q96DE0 195 aaKnown RBP18.06■□□□□ 0.48
GPNMB-204ENST00000459927 EIF3AQ14152 1382 aaKnown RBP18.04■□□□□ 0.48
GPNMB-204ENST00000459927 NWD2Q9ULI1 1742 aa18.03■□□□□ 0.48
GPNMB-204ENST00000459927 A0A0G2JS52 829 aa18.03■□□□□ 0.48
GPNMB-204ENST00000459927 MYT1Q01538 1121 aa18.03■□□□□ 0.48
GPNMB-204ENST00000459927 CDK19Q9BWU1 502 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms