RNA–Protein interactions for RNA: ENST00000454583.6

RIF1-207, Transcript of replication timing regulatory factor 1, humanhuman

TSL 2

Gene RIF1, Length 3,552 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-207ENST00000454583 ABCC11Q96J66 1382 aa7.39□□□□□ -1.23
RIF1-207ENST00000454583 AHDC1Q5TGY3 1603 aaPredicted RBP7.38□□□□□ -1.23
RIF1-207ENST00000454583 SIRT1Q96EB6 747 aa7.38□□□□□ -1.23
RIF1-207ENST00000454583 FAM208AQ9UK61 1670 aaKnown RBP7.38□□□□□ -1.23
RIF1-207ENST00000454583 LRPPRCP42704 1394 aaKnown RBP7.38□□□□□ -1.23
RIF1-207ENST00000454583 ATXN8OSP0DMR3 200 aa7.38□□□□□ -1.23
RIF1-207ENST00000454583 LTKP29376 864 aa7.38□□□□□ -1.23
RIF1-207ENST00000454583 FOXD4L1Q9NU39 408 aa7.38□□□□□ -1.23
RIF1-207ENST00000454583 SIPA1L3O60292 1781 aaPredicted RBP7.37□□□□□ -1.23
RIF1-207ENST00000454583 CPSF1Q10570 1443 aaKnown RBP7.37□□□□□ -1.23
RIF1-207ENST00000454583 SLIT3O75094 1523 aa7.37□□□□□ -1.23
RIF1-207ENST00000454583 C11orf95C9JLR9 678 aaPredicted RBP7.37□□□□□ -1.23
RIF1-207ENST00000454583 COL3A1P02461 1466 aaPredicted RBP7.37□□□□□ -1.23
RIF1-207ENST00000454583 RGPD5Q99666 1765 aa7.37□□□□□ -1.23
RIF1-207ENST00000454583 SMG6Q86US8 1419 aaKnown RBP7.36□□□□□ -1.23
RIF1-207ENST00000454583 WASHC2CQ9Y4E1 1318 aa7.36□□□□□ -1.23
RIF1-207ENST00000454583 ITGAEP38570 1179 aa7.36□□□□□ -1.23
RIF1-207ENST00000454583 NFAT5O94916 1531 aa7.36□□□□□ -1.23
RIF1-207ENST00000454583 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.35□□□□□ -1.23
RIF1-207ENST00000454583 NPHP4O75161 1426 aaPredicted RBP7.35□□□□□ -1.23
RIF1-207ENST00000454583 DCCP43146 1447 aa7.35□□□□□ -1.23
RIF1-207ENST00000454583 DISP3Q9P2K9 1392 aa7.35□□□□□ -1.23
RIF1-207ENST00000454583 RGPD2P0DJD1 1756 aa7.35□□□□□ -1.23
RIF1-207ENST00000454583 ABCC6O95255 1503 aa7.35□□□□□ -1.23
RIF1-207ENST00000454583 LRRC37A3O60309 1634 aa7.35□□□□□ -1.23
RIF1-207ENST00000454583 MAP2P11137 1827 aaKnown RBP7.35□□□□□ -1.23
RIF1-207ENST00000454583 ROBO2Q9HCK4 1378 aa7.34□□□□□ -1.23
RIF1-207ENST00000454583 PXDNQ92626 1479 aa7.34□□□□□ -1.23
RIF1-207ENST00000454583 ZBTB22O15209 634 aa7.33□□□□□ -1.24
RIF1-207ENST00000454583 ROBO1Q9Y6N7 1651 aa7.33□□□□□ -1.24
RIF1-207ENST00000454583 PLEKHH1Q9ULM0 1364 aa7.33□□□□□ -1.24
RIF1-207ENST00000454583 CICQ96RK0 1608 aaPredicted RBP7.33□□□□□ -1.24
RIF1-207ENST00000454583 GLI3P10071 1580 aa7.32□□□□□ -1.24
RIF1-207ENST00000454583 NBPF1Q3BBV0 1214 aa7.32□□□□□ -1.24
RIF1-207ENST00000454583 DLG5Q8TDM6 1919 aa7.32□□□□□ -1.24
RIF1-207ENST00000454583 PKD1L3Q7Z443 1732 aa7.32□□□□□ -1.24
RIF1-207ENST00000454583 NCAPD2Q15021 1401 aa7.32□□□□□ -1.24
RIF1-207ENST00000454583 CEBPAP49715 358 aaPredicted RBP7.31□□□□□ -1.24
RIF1-207ENST00000454583 PUS7Q96PZ0 661 aaKnown RBP7.31□□□□□ -1.24
RIF1-207ENST00000454583 PARP4Q9UKK3 1724 aaKnown RBP7.31□□□□□ -1.24
RIF1-207ENST00000454583 GGT6Q6P531 493 aa7.31□□□□□ -1.24
RIF1-207ENST00000454583 ANKARQ7Z5J8 1434 aa7.31□□□□□ -1.24
RIF1-207ENST00000454583 WASHC2AQ641Q2 1341 aa7.31□□□□□ -1.24
RIF1-207ENST00000454583 PAPPAQ13219 1627 aa7.31□□□□□ -1.24
RIF1-207ENST00000454583 POLR3AO14802 1390 aaPredicted RBP7.31□□□□□ -1.24
RIF1-207ENST00000454583 USP47Q96K76 1375 aa7.31□□□□□ -1.24
RIF1-207ENST00000454583 PHLPP1O60346 1717 aa7.3□□□□□ -1.24
RIF1-207ENST00000454583 ADGRL3Q9HAR2 1447 aa7.3□□□□□ -1.24
RIF1-207ENST00000454583 SLC4A2P04920 1241 aa7.3□□□□□ -1.24
RIF1-207ENST00000454583 ARID4BQ4LE39 1312 aaPredicted RBP7.3□□□□□ -1.24
RIF1-207ENST00000454583 N4BP2Q86UW6 1770 aaPredicted RBP7.3□□□□□ -1.24
RIF1-207ENST00000454583 TRHP20396 242 aaPredicted RBP7.29□□□□□ -1.24
RIF1-207ENST00000454583 NPC1L1Q9UHC9 1359 aa7.29□□□□□ -1.24
RIF1-207ENST00000454583 PER1O15534 1290 aaPredicted RBP7.29□□□□□ -1.24
RIF1-207ENST00000454583 CCDC7Q96M83 1385 aa7.29□□□□□ -1.24
RIF1-207ENST00000454583 NWD2Q9ULI1 1742 aa7.29□□□□□ -1.24
RIF1-207ENST00000454583 TBX22Q9Y458 520 aa7.27□□□□□ -1.25
RIF1-207ENST00000454583 OVOS2A0A0J9YW53 1432 aa7.27□□□□□ -1.25
RIF1-207ENST00000454583 OVOS2Q6IE36 1432 aa7.27□□□□□ -1.25
RIF1-207ENST00000454583 TONSLQ96HA7 1378 aa7.26□□□□□ -1.25
RIF1-207ENST00000454583 PARD3Q8TEW0 1356 aa7.25□□□□□ -1.25
RIF1-207ENST00000454583 UBR2Q8IWV8 1755 aa7.25□□□□□ -1.25
RIF1-207ENST00000454583 KIF7Q2M1P5 1343 aa7.25□□□□□ -1.25
RIF1-207ENST00000454583 CFAP70Q5T0N1 1121 aa7.24□□□□□ -1.25
RIF1-207ENST00000454583 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.24□□□□□ -1.254e-7■■■□□ 16.3
RIF1-207ENST00000454583 TOGARAM1Q9Y4F4 1720 aa7.24□□□□□ -1.25
RIF1-207ENST00000454583 PRR36Q9H6K5 1346 aa7.24□□□□□ -1.25
RIF1-207ENST00000454583 ZNF831Q5JPB2 1677 aa7.24□□□□□ -1.25
RIF1-207ENST00000454583 TRIM52Q96A61 297 aa7.24□□□□□ -1.25
RIF1-207ENST00000454583 INSRP06213 1382 aa7.24□□□□□ -1.25
RIF1-207ENST00000454583 MYCNP04198 464 aaPredicted RBP7.23□□□□□ -1.25
RIF1-207ENST00000454583 RREB1Q92766 1687 aa7.23□□□□□ -1.25
RIF1-207ENST00000454583 ROCK2O75116 1388 aaKnown RBP7.23□□□□□ -1.25
RIF1-207ENST00000454583 THSD7AQ9UPZ6 1657 aa7.23□□□□□ -1.25
RIF1-207ENST00000454583 KDM3BQ7LBC6 1761 aa7.22□□□□□ -1.25
RIF1-207ENST00000454583 NINLQ9Y2I6 1382 aa7.22□□□□□ -1.25
RIF1-207ENST00000454583 HSPA5P11021 654 aaKnown RBP7.22□□□□□ -1.25
RIF1-207ENST00000454583 DCAF11Q8TEB1 546 aa7.22□□□□□ -1.25
RIF1-207ENST00000454583 CCER1Q8TC90 406 aaPredicted RBP7.21□□□□□ -1.25
RIF1-207ENST00000454583 USP31Q70CQ4 1352 aa7.21□□□□□ -1.25
RIF1-207ENST00000454583 C1orf167Q5SNV9 1468 aa7.21□□□□□ -1.26
RIF1-207ENST00000454583 SBF2Q86WG5 1849 aa7.21□□□□□ -1.26
RIF1-207ENST00000454583 COL24A1Q17RW2 1714 aa7.21□□□□□ -1.26
RIF1-207ENST00000454583 SCN11AQ9UI33 1791 aa7.21□□□□□ -1.26
RIF1-207ENST00000454583 PNPLA6Q8IY17 1366 aa7.21□□□□□ -1.26
RIF1-207ENST00000454583 ZNF316A6NFI3 1004 aaPredicted RBP7.2□□□□□ -1.26
RIF1-207ENST00000454583 CASZ1Q86V15 1759 aa7.2□□□□□ -1.26
RIF1-207ENST00000454583 VGFO15240 615 aaPredicted RBP7.2□□□□□ -1.26
RIF1-207ENST00000454583 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.2□□□□□ -1.26
RIF1-207ENST00000454583 COL14A1Q05707 1796 aaKnown RBP7.2□□□□□ -1.26
RIF1-207ENST00000454583 CDK12Q9NYV4 1490 aaPredicted RBP7.19□□□□□ -1.26
RIF1-207ENST00000454583 ANKRD36BQ8N2N9 1353 aa7.19□□□□□ -1.26
RIF1-207ENST00000454583 USP6P35125 1406 aa7.19□□□□□ -1.26
RIF1-207ENST00000454583 CARD14Q9BXL6 1004 aa7.18□□□□□ -1.26
RIF1-207ENST00000454583 A0A1W2PP64 1363 aa7.18□□□□□ -1.26
RIF1-207ENST00000454583 BLMP54132 1417 aaPredicted RBP7.17□□□□□ -1.26
RIF1-207ENST00000454583 RGPD3A6NKT7 1758 aaPredicted RBP7.17□□□□□ -1.26
RIF1-207ENST00000454583 RGPD4Q7Z3J3 1758 aa7.17□□□□□ -1.26
RIF1-207ENST00000454583 BRD4O60885 1362 aaPredicted RBP7.17□□□□□ -1.26
RIF1-207ENST00000454583 NCKAP5LQ9HCH0 1330 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms