RNA–Protein interactions for RNA: ENST00000454132.5

LMBR1-213, Transcript of limb development membrane protein 1, human

TSL 2

Gene LMBR1, Length 2,922 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMBR1-213	ENST00000454132	MYH16	Q9H6N6	1097 aa		24.78	■■□□□ 1.56
LMBR1-213	ENST00000454132	CLCN1	P35523	988 aa		24.78	■■□□□ 1.56
LMBR1-213	ENST00000454132	DZIP1L	Q8IYY4	767 aa	Known RBP	24.78	■■□□□ 1.56
LMBR1-213	ENST00000454132	SMC4	Q9NTJ3	1288 aa		24.78	■■□□□ 1.56
LMBR1-213	ENST00000454132	HSP90AA1	P07900	732 aa	Known RBP	24.77	■■□□□ 1.56
LMBR1-213	ENST00000454132	NPC1L1	Q9UHC9	1359 aa		24.77	■■□□□ 1.56
LMBR1-213	ENST00000454132	HSP90AA2P	Q14568	343 aa	Predicted RBP	24.76	■■□□□ 1.55
LMBR1-213	ENST00000454132	ERCC6	Q03468	1493 aa		24.76	■■□□□ 1.55
LMBR1-213	ENST00000454132	GAS2L3	Q86XJ1	694 aa		24.76	■■□□□ 1.55
LMBR1-213	ENST00000454132	NSD3	Q9BZ95	1437 aa		24.76	■■□□□ 1.55
LMBR1-213	ENST00000454132	NINL	Q9Y2I6	1382 aa		24.76	■■□□□ 1.55
LMBR1-213	ENST00000454132	ZKSCAN2	Q63HK3	967 aa		24.75	■■□□□ 1.55
LMBR1-213	ENST00000454132	MAST1	Q9Y2H9	1570 aa		24.75	■■□□□ 1.55
LMBR1-213	ENST00000454132	ERVK-7	P63135	1459 aa		24.75	■■□□□ 1.55
LMBR1-213	ENST00000454132	MRE11	P49959	708 aa		24.74	■■□□□ 1.55
LMBR1-213	ENST00000454132	EXOSC9	Q06265	439 aa	Known RBP	24.74	■■□□□ 1.55
LMBR1-213	ENST00000454132	TMEM132E	Q6IEE7	984 aa		24.74	■■□□□ 1.55
LMBR1-213	ENST00000454132	LNPK	Q9C0E8	428 aa		24.74	■■□□□ 1.55
LMBR1-213	ENST00000454132	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	24.73	■■□□□ 1.55	1e-6	■■■□□ 16.9
LMBR1-213	ENST00000454132	ATP10A	O60312	1499 aa		24.73	■■□□□ 1.55
LMBR1-213	ENST00000454132	TRAPPC8	Q9Y2L5	1435 aa		24.73	■■□□□ 1.55
LMBR1-213	ENST00000454132	TRIM27	P14373	513 aa		24.72	■■□□□ 1.55
LMBR1-213	ENST00000454132	POLR3A	O14802	1390 aa	Predicted RBP	24.72	■■□□□ 1.55
LMBR1-213	ENST00000454132	DUOX2	Q9NRD8	1548 aa		24.72	■■□□□ 1.55
LMBR1-213	ENST00000454132	U2SURP	O15042	1029 aa	Known RBP	24.71	■■□□□ 1.55
LMBR1-213	ENST00000454132	KIF3B	O15066	747 aa		24.71	■■□□□ 1.55
LMBR1-213	ENST00000454132	TNPO1	Q92973	898 aa	Known RBP	24.71	■■□□□ 1.55
LMBR1-213	ENST00000454132	ESPN	B1AK53	854 aa		24.71	■■□□□ 1.55
LMBR1-213	ENST00000454132	NUTM2D	Q5VT03	806 aa	Predicted RBP	24.71	■■□□□ 1.55
LMBR1-213	ENST00000454132	SPAG9	O60271	1321 aa	Known RBP	24.7	■■□□□ 1.54
LMBR1-213	ENST00000454132	KDM5A	P29375	1690 aa	Known RBP	24.7	■■□□□ 1.54
LMBR1-213	ENST00000454132	ZNF692	Q9BU19	519 aa	Predicted RBP	24.7	■■□□□ 1.54
LMBR1-213	ENST00000454132	RTEL1-TNFRSF6B	F6WH68	1400 aa		24.7	■■□□□ 1.54
LMBR1-213	ENST00000454132	HSP90AB1	P08238	724 aa	Known RBP	24.69	■■□□□ 1.54
LMBR1-213	ENST00000454132	SAFB2	Q14151	953 aa	Known RBP eCLIP	24.69	■■□□□ 1.54
LMBR1-213	ENST00000454132	WDR63	Q8IWG1	891 aa		24.69	■■□□□ 1.54
LMBR1-213	ENST00000454132	SSH1	Q8WYL5	1049 aa		24.69	■■□□□ 1.54
LMBR1-213	ENST00000454132	PKNOX2	Q96KN3	472 aa		24.69	■■□□□ 1.54
LMBR1-213	ENST00000454132	NGEF	Q8N5V2	710 aa		24.69	■■□□□ 1.54
LMBR1-213	ENST00000454132	TRIM44	Q96DX7	344 aa	Predicted RBP	24.69	■■□□□ 1.54
LMBR1-213	ENST00000454132	UGGT1	Q9NYU2	1555 aa		24.69	■■□□□ 1.54
LMBR1-213	ENST00000454132	NOB1	Q9ULX3	412 aa	Known RBP	24.68	■■□□□ 1.54
LMBR1-213	ENST00000454132	RBM42	Q9BTD8	480 aa	Known RBP	24.68	■■□□□ 1.54
LMBR1-213	ENST00000454132	EFCAB2	Q5VUJ9	269 aa		24.67	■■□□□ 1.54
LMBR1-213	ENST00000454132	CD2BP2	O95400	341 aa	Known RBP	24.67	■■□□□ 1.54
LMBR1-213	ENST00000454132	TMEM57	Q8N5G2	664 aa		24.67	■■□□□ 1.54
LMBR1-213	ENST00000454132	ZMYND15	Q9H091	742 aa		24.66	■■□□□ 1.54
LMBR1-213	ENST00000454132	CEP152	O94986	1710 aa		24.66	■■□□□ 1.54
LMBR1-213	ENST00000454132	SCAPER	Q9BY12	1400 aa		24.66	■■□□□ 1.54
LMBR1-213	ENST00000454132	CLTCL1	P53675	1640 aa		24.66	■■□□□ 1.54
LMBR1-213	ENST00000454132	DDX11L8	A8MPP1	907 aa		24.64	■■□□□ 1.54
LMBR1-213	ENST00000454132	GLIPR1L2	Q4G1C9	344 aa		24.64	■■□□□ 1.54
LMBR1-213	ENST00000454132	PHF23	Q9BUL5	403 aa	Predicted RBP	24.64	■■□□□ 1.54
LMBR1-213	ENST00000454132	CFAP53	Q96M91	514 aa		24.64	■■□□□ 1.53
LMBR1-213	ENST00000454132	C1orf115	Q9H7X2	142 aa		24.63	■■□□□ 1.53
LMBR1-213	ENST00000454132	PLXNC1	O60486	1568 aa		24.62	■■□□□ 1.53
LMBR1-213	ENST00000454132	SPHKAP	Q2M3C7	1700 aa		24.6	■■□□□ 1.53
LMBR1-213	ENST00000454132	ATF7IP	Q6VMQ6	1270 aa		24.59	■■□□□ 1.53
LMBR1-213	ENST00000454132	AAMP	Q13685	434 aa		24.59	■■□□□ 1.53
LMBR1-213	ENST00000454132	DDX19B	Q9UMR2	479 aa		24.58	■■□□□ 1.53
LMBR1-213	ENST00000454132	SSFA2	P28290	1259 aa		24.57	■■□□□ 1.52
LMBR1-213	ENST00000454132	ANKRD45	Q5TZF3	282 aa		24.57	■■□□□ 1.52
LMBR1-213	ENST00000454132	SHPRH	Q149N8	1683 aa		24.57	■■□□□ 1.52
LMBR1-213	ENST00000454132	PTPRT	O14522	1441 aa		24.56	■■□□□ 1.52
LMBR1-213	ENST00000454132	TRPM2	O94759	1503 aa		24.56	■■□□□ 1.52
LMBR1-213	ENST00000454132	CABP2	Q9NPB3	220 aa		24.56	■■□□□ 1.52
LMBR1-213	ENST00000454132	IQSEC2	Q5JU85	1478 aa		24.56	■■□□□ 1.52
LMBR1-213	ENST00000454132	HDAC1	Q13547	482 aa	Predicted RBP	24.55	■■□□□ 1.52
LMBR1-213	ENST00000454132	GGNBP2	Q9H3C7	697 aa		24.55	■■□□□ 1.52
LMBR1-213	ENST00000454132	NCL	P19338	710 aa	Known RBP	24.55	■■□□□ 1.52
LMBR1-213	ENST00000454132	SMC5	Q8IY18	1101 aa		24.55	■■□□□ 1.52
LMBR1-213	ENST00000454132	DDIT3	P35638	169 aa		24.53	■■□□□ 1.52
LMBR1-213	ENST00000454132	GBP4	Q96PP9	640 aa		24.53	■■□□□ 1.52
LMBR1-213	ENST00000454132	ELL2	O00472	640 aa	Predicted RBP	24.53	■■□□□ 1.52
LMBR1-213	ENST00000454132	RRP9	O43818	475 aa	Known RBP	24.53	■■□□□ 1.52
LMBR1-213	ENST00000454132	TRIM35	Q9UPQ4	493 aa		24.53	■■□□□ 1.52
LMBR1-213	ENST00000454132	TMPO	P42166	694 aa	Known RBP	24.52	■■□□□ 1.52
LMBR1-213	ENST00000454132	CCDC27	Q2M243	656 aa		24.52	■■□□□ 1.52
LMBR1-213	ENST00000454132	ZBTB40	Q9NUA8	1239 aa		24.52	■■□□□ 1.52
LMBR1-213	ENST00000454132	CHD1L	Q86WJ1	897 aa		24.51	■■□□□ 1.51
LMBR1-213	ENST00000454132	KIF2C	Q99661	725 aa		24.51	■■□□□ 1.51
LMBR1-213	ENST00000454132	GAS2L2	Q8NHY3	880 aa		24.51	■■□□□ 1.51
LMBR1-213	ENST00000454132	RIPK4	P57078	832 aa		24.51	■■□□□ 1.51
LMBR1-213	ENST00000454132	RAB3GAP1	Q15042	981 aa		24.51	■■□□□ 1.51
LMBR1-213	ENST00000454132	STAC3	Q96MF2	364 aa		24.5	■■□□□ 1.51
LMBR1-213	ENST00000454132	ABCA6	Q8N139	1617 aa		24.5	■■□□□ 1.51
LMBR1-213	ENST00000454132	RBM25	P49756	843 aa	Known RBP	24.5	■■□□□ 1.51
LMBR1-213	ENST00000454132	RBM10	P98175	930 aa	Known RBP	24.5	■■□□□ 1.51
LMBR1-213	ENST00000454132	NUCB1	Q02818	461 aa		24.5	■■□□□ 1.51
LMBR1-213	ENST00000454132	ARID3A	Q99856	593 aa		24.5	■■□□□ 1.51
LMBR1-213	ENST00000454132	NOS1	P29475	1434 aa		24.5	■■□□□ 1.51
LMBR1-213	ENST00000454132	FBLN1	P23142	703 aa		24.49	■■□□□ 1.51
LMBR1-213	ENST00000454132	PLCH2	O75038	1416 aa		24.49	■■□□□ 1.51
LMBR1-213	ENST00000454132	ZNF518A	Q6AHZ1	1483 aa		24.49	■■□□□ 1.51
LMBR1-213	ENST00000454132	KANK1	Q14678	1352 aa		24.49	■■□□□ 1.51
LMBR1-213	ENST00000454132	KIAA1211	Q6ZU35	1233 aa		24.49	■■□□□ 1.51
LMBR1-213	ENST00000454132	ZMYM3	Q14202	1370 aa		24.49	■■□□□ 1.51
LMBR1-213	ENST00000454132	DDX49	Q9Y6V7	483 aa	Known RBP	24.48	■■□□□ 1.51
LMBR1-213	ENST00000454132	ERCC6L2	Q5T890	1561 aa		24.48	■■□□□ 1.51
LMBR1-213	ENST00000454132	NASP	P49321	788 aa	Predicted RBP	24.47	■■□□□ 1.51

Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms