RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 L3MBTL2Q969R5 705 aa12.6□□□□□ -0.39
SYNE1-214ENST00000454018 NBR1Q14596 966 aa12.59□□□□□ -0.39
SYNE1-214ENST00000454018 STRCP1A6NGW2 1772 aa12.59□□□□□ -0.39
SYNE1-214ENST00000454018 ABCB7O75027 752 aa12.58□□□□□ -0.4
SYNE1-214ENST00000454018 ADGRF5Q8IZF2 1346 aa12.58□□□□□ -0.4
SYNE1-214ENST00000454018 ASXL1Q8IXJ9 1541 aa12.58□□□□□ -0.4
SYNE1-214ENST00000454018 MIER1Q8N108 512 aa12.57□□□□□ -0.4
SYNE1-214ENST00000454018 ADGRB1O14514 1584 aa12.57□□□□□ -0.4
SYNE1-214ENST00000454018 PIK3R4Q99570 1358 aa12.57□□□□□ -0.4
SYNE1-214ENST00000454018 ZNF692Q9BU19 519 aaPredicted RBP12.57□□□□□ -0.4
SYNE1-214ENST00000454018 ARHGEF28Q8N1W1 1705 aaKnown RBP12.56□□□□□ -0.4
SYNE1-214ENST00000454018 RALGAPBQ86X10 1494 aa12.56□□□□□ -0.4
SYNE1-214ENST00000454018 CIZ1Q9ULV3 898 aaPredicted RBP12.56□□□□□ -0.4
SYNE1-214ENST00000454018 CPS1P31327 1500 aa12.55□□□□□ -0.4
SYNE1-214ENST00000454018 NKTRP30414 1462 aaKnown RBP12.55□□□□□ -0.4
SYNE1-214ENST00000454018 XIRP1Q702N8 1843 aaKnown RBP12.53□□□□□ -0.4
SYNE1-214ENST00000454018 TBX22Q9Y458 520 aa12.53□□□□□ -0.4
SYNE1-214ENST00000454018 CACNB1Q02641 598 aaPredicted RBP12.52□□□□□ -0.4
SYNE1-214ENST00000454018 SLC26A8Q96RN1 970 aa12.52□□□□□ -0.4
SYNE1-214ENST00000454018 C14orf93Q9H972 538 aaKnown RBP12.52□□□□□ -0.41
SYNE1-214ENST00000454018 METP08581 1390 aa12.51□□□□□ -0.41
SYNE1-214ENST00000454018 DLC1Q96QB1 1528 aa12.51□□□□□ -0.41
SYNE1-214ENST00000454018 TULP1O00294 542 aaPredicted RBP12.51□□□□□ -0.41
SYNE1-214ENST00000454018 TECPR2O15040 1411 aa12.51□□□□□ -0.41
SYNE1-214ENST00000454018 PTCH1Q13635 1447 aa12.51□□□□□ -0.41
SYNE1-214ENST00000454018 YTHDC2Q9H6S0 1430 aaKnown RBP12.5□□□□□ -0.41
SYNE1-214ENST00000454018 CFAP70Q5T0N1 1121 aa12.5□□□□□ -0.41
SYNE1-214ENST00000454018 ROCK2O75116 1388 aaKnown RBP12.5□□□□□ -0.41
SYNE1-214ENST00000454018 GPRASP1Q5JY77 1395 aa12.5□□□□□ -0.41
SYNE1-214ENST00000454018 LTBP4Q8N2S1 1624 aa12.5□□□□□ -0.41
SYNE1-214ENST00000454018 QRICH2Q9H0J4 1663 aa12.49□□□□□ -0.41
SYNE1-214ENST00000454018 PTPRUQ92729 1446 aa12.49□□□□□ -0.41
SYNE1-214ENST00000454018 RNF39Q9H2S5 420 aa12.49□□□□□ -0.41
SYNE1-214ENST00000454018 NALCNQ8IZF0 1738 aa12.49□□□□□ -0.41
SYNE1-214ENST00000454018 NBPF8Q3BBV2 869 aa12.48□□□□□ -0.41
SYNE1-214ENST00000454018 SSUH2Q9Y2M2 353 aa12.48□□□□□ -0.41
SYNE1-214ENST00000454018 LRPPRCP42704 1394 aaKnown RBP12.48□□□□□ -0.41
SYNE1-214ENST00000454018 HS6ST3Q8IZP7 471 aa12.47□□□□□ -0.41
SYNE1-214ENST00000454018 KCNA6P17658 529 aa12.47□□□□□ -0.41
SYNE1-214ENST00000454018 ZNF335Q9H4Z2 1342 aaPredicted RBP12.46□□□□□ -0.41
SYNE1-214ENST00000454018 ABCC11Q96J66 1382 aa12.46□□□□□ -0.42
SYNE1-214ENST00000454018 FAM135BQ49AJ0 1406 aa12.46□□□□□ -0.42
SYNE1-214ENST00000454018 EIF3AQ14152 1382 aaKnown RBP12.45□□□□□ -0.42
SYNE1-214ENST00000454018 ADGRB2O60241 1585 aa12.45□□□□□ -0.42
SYNE1-214ENST00000454018 LRRC7Q96NW7 1537 aa12.44□□□□□ -0.42
SYNE1-214ENST00000454018 ZEB1P37275 1124 aaPredicted RBP12.44□□□□□ -0.42
SYNE1-214ENST00000454018 TMEM132EQ6IEE7 984 aa12.44□□□□□ -0.42
SYNE1-214ENST00000454018 AMOTL2Q9Y2J4 779 aa12.44□□□□□ -0.42
SYNE1-214ENST00000454018 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.43□□□□□ -0.42
SYNE1-214ENST00000454018 SPDYE2BA6NHP3 402 aa12.43□□□□□ -0.42
SYNE1-214ENST00000454018 SPDYE6P0CI01 402 aa12.43□□□□□ -0.42
SYNE1-214ENST00000454018 NBPF1Q3BBV0 1214 aa12.43□□□□□ -0.42
SYNE1-214ENST00000454018 SPDYE2Q495Y8 402 aa12.43□□□□□ -0.42
SYNE1-214ENST00000454018 GTF3C3Q9Y5Q9 886 aa12.43□□□□□ -0.42
SYNE1-214ENST00000454018 IQSEC2Q5JU85 1478 aa12.43□□□□□ -0.42
SYNE1-214ENST00000454018 ROBO2Q9HCK4 1378 aa12.43□□□□□ -0.42
SYNE1-214ENST00000454018 CDC42BPGQ6DT37 1551 aa12.43□□□□□ -0.42
SYNE1-214ENST00000454018 NCOA3Q9Y6Q9 1424 aa12.43□□□□□ -0.42
SYNE1-214ENST00000454018 CARD11Q9BXL7 1154 aa12.42□□□□□ -0.42
SYNE1-214ENST00000454018 ADGRL3Q9HAR2 1447 aa12.41□□□□□ -0.42
SYNE1-214ENST00000454018 FMN2Q9NZ56 1722 aa12.41□□□□□ -0.42
SYNE1-214ENST00000454018 ITSN1Q15811 1721 aa12.4□□□□□ -0.42
SYNE1-214ENST00000454018 SIRT1Q96EB6 747 aa12.4□□□□□ -0.42
SYNE1-214ENST00000454018 STK26Q9P289 416 aa12.4□□□□□ -0.42
SYNE1-214ENST00000454018 TMEM94Q12767 1356 aa12.4□□□□□ -0.42
SYNE1-214ENST00000454018 USP47Q96K76 1375 aa12.4□□□□□ -0.42
SYNE1-214ENST00000454018 DCCP43146 1447 aa12.4□□□□□ -0.43
SYNE1-214ENST00000454018 RNF25Q96BH1 459 aaPredicted RBP12.39□□□□□ -0.43
SYNE1-214ENST00000454018 TRAK1Q9UPV9 953 aa12.39□□□□□ -0.43
SYNE1-214ENST00000454018 RGPD8O14715 1765 aaPredicted RBP12.38□□□□□ -0.43
SYNE1-214ENST00000454018 NKX1-1Q15270 411 aaPredicted RBP12.37□□□□□ -0.43
SYNE1-214ENST00000454018 PROSER2Q86WR7 435 aaPredicted RBP12.37□□□□□ -0.43
SYNE1-214ENST00000454018 PLEKHH1Q9ULM0 1364 aa12.37□□□□□ -0.43
SYNE1-214ENST00000454018 SBNO2Q9Y2G9 1366 aa12.37□□□□□ -0.43
SYNE1-214ENST00000454018 PRAM1Q96QH2 718 aa12.37□□□□□ -0.43
SYNE1-214ENST00000454018 CENPJQ9HC77 1338 aaPredicted RBP12.37□□□□□ -0.43
SYNE1-214ENST00000454018 TOPAZ1Q8N9V7 1692 aa12.36□□□□□ -0.43
SYNE1-214ENST00000454018 MSH6P52701 1360 aa12.36□□□□□ -0.43
SYNE1-214ENST00000454018 POGKQ9P215 609 aa12.36□□□□□ -0.43
SYNE1-214ENST00000454018 ZBTB47Q9UFB7 747 aaPredicted RBP12.36□□□□□ -0.43
SYNE1-214ENST00000454018 TULP4Q9NRJ4 1543 aa12.34□□□□□ -0.43
SYNE1-214ENST00000454018 C1QBPQ07021 282 aaKnown RBP12.34□□□□□ -0.43
SYNE1-214ENST00000454018 WAPLQ7Z5K2 1190 aa12.34□□□□□ -0.43
SYNE1-214ENST00000454018 USP32Q8NFA0 1604 aa12.34□□□□□ -0.43
SYNE1-214ENST00000454018 PLEKHG5O94827 1062 aa12.33□□□□□ -0.44
SYNE1-214ENST00000454018 C14orf37Q86TY3 774 aa12.33□□□□□ -0.44
SYNE1-214ENST00000454018 KIF1AQ12756 1690 aa12.33□□□□□ -0.44
SYNE1-214ENST00000454018 EIF4G2P78344 907 aaKnown RBP eCLIP12.32□□□□□ -0.44
SYNE1-214ENST00000454018 SAFB2Q14151 953 aaKnown RBP eCLIP12.32□□□□□ -0.44
SYNE1-214ENST00000454018 C19orf44Q9H6X5 657 aa12.32□□□□□ -0.44
SYNE1-214ENST00000454018 GTPBP6O43824 516 aaPredicted RBP12.31□□□□□ -0.44
SYNE1-214ENST00000454018 CERKQ8TCT0 537 aa12.31□□□□□ -0.44
SYNE1-214ENST00000454018 RBM33Q96EV2 1170 aaKnown RBP12.31□□□□□ -0.44
SYNE1-214ENST00000454018 MYOM1P52179 1685 aa12.3□□□□□ -0.44
SYNE1-214ENST00000454018 MINK1Q8N4C8 1332 aaPredicted RBP12.3□□□□□ -0.44
SYNE1-214ENST00000454018 ANKARQ7Z5J8 1434 aa12.3□□□□□ -0.44
SYNE1-214ENST00000454018 ROBO1Q9Y6N7 1651 aa12.3□□□□□ -0.44
SYNE1-214ENST00000454018 ATP7BP35670 1465 aa12.29□□□□□ -0.44
SYNE1-214ENST00000454018 MST1RQ04912 1400 aa12.29□□□□□ -0.44
SYNE1-214ENST00000454018 ST20-MTHFSA0A0A6YYL1 179 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms