RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 LRRC7Q96NW7 1537 aa16.37■□□□□ 0.21
SCN9A-204ENST00000452182 USP47Q96K76 1375 aa16.37■□□□□ 0.21
SCN9A-204ENST00000452182 PRAM1Q96QH2 718 aa16.36■□□□□ 0.21
SCN9A-204ENST00000452182 XIRP1Q702N8 1843 aaKnown RBP16.35■□□□□ 0.21
SCN9A-204ENST00000452182 PROSER2Q86WR7 435 aaPredicted RBP16.35■□□□□ 0.21
SCN9A-204ENST00000452182 CENPJQ9HC77 1338 aaPredicted RBP16.35■□□□□ 0.21
SCN9A-204ENST00000452182 POGKQ9P215 609 aa16.34■□□□□ 0.21
SCN9A-204ENST00000452182 PLEKHH1Q9ULM0 1364 aa16.34■□□□□ 0.21
SCN9A-204ENST00000452182 QRICH2Q9H0J4 1663 aa16.34■□□□□ 0.21
SCN9A-204ENST00000452182 EIF4G2P78344 907 aaKnown RBP eCLIP16.34■□□□□ 0.21
SCN9A-204ENST00000452182 WAPLQ7Z5K2 1190 aa16.34■□□□□ 0.21
SCN9A-204ENST00000452182 TMEM94Q12767 1356 aa16.33■□□□□ 0.21
SCN9A-204ENST00000452182 SBNO2Q9Y2G9 1366 aa16.33■□□□□ 0.21
SCN9A-204ENST00000452182 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.33■□□□□ 0.2
SCN9A-204ENST00000452182 NALCNQ8IZF0 1738 aa16.32■□□□□ 0.2
SCN9A-204ENST00000452182 ADGRB2O60241 1585 aa16.32■□□□□ 0.2
SCN9A-204ENST00000452182 ADGRL3Q9HAR2 1447 aa16.32■□□□□ 0.2
SCN9A-204ENST00000452182 ST20-MTHFSA0A0A6YYL1 179 aa16.31■□□□□ 0.2
SCN9A-204ENST00000452182 SLC24A1O60721 1099 aa16.3■□□□□ 0.2
SCN9A-204ENST00000452182 IQSEC2Q5JU85 1478 aa16.3■□□□□ 0.2
SCN9A-204ENST00000452182 C19orf44Q9H6X5 657 aa16.29■□□□□ 0.2
SCN9A-204ENST00000452182 DCCP43146 1447 aa16.29■□□□□ 0.2
SCN9A-204ENST00000452182 CDC42BPGQ6DT37 1551 aa16.29■□□□□ 0.2
SCN9A-204ENST00000452182 HSPA5P11021 654 aaKnown RBP16.28■□□□□ 0.2
SCN9A-204ENST00000452182 SAFB2Q14151 953 aaKnown RBP eCLIP16.28■□□□□ 0.2
SCN9A-204ENST00000452182 RBM33Q96EV2 1170 aaKnown RBP16.28■□□□□ 0.2
SCN9A-204ENST00000452182 TESK2Q96S53 571 aa16.28■□□□□ 0.2
SCN9A-204ENST00000452182 MSH6P52701 1360 aa16.27■□□□□ 0.19
SCN9A-204ENST00000452182 C14orf37Q86TY3 774 aa16.26■□□□□ 0.19
SCN9A-204ENST00000452182 MINK1Q8N4C8 1332 aaPredicted RBP16.26■□□□□ 0.19
SCN9A-204ENST00000452182 TULP4Q9NRJ4 1543 aa16.24■□□□□ 0.19
SCN9A-204ENST00000452182 FMN2Q9NZ56 1722 aa16.24■□□□□ 0.19
SCN9A-204ENST00000452182 CERKQ8TCT0 537 aa16.23■□□□□ 0.19
SCN9A-204ENST00000452182 EVC2Q86UK5 1308 aa16.23■□□□□ 0.19
SCN9A-204ENST00000452182 WASLO00401 505 aaPredicted RBP16.23■□□□□ 0.19
SCN9A-204ENST00000452182 CADPS2Q86UW7 1296 aa16.23■□□□□ 0.19
SCN9A-204ENST00000452182 HIRIP3Q9BW71 556 aaPredicted RBP16.23■□□□□ 0.19
SCN9A-204ENST00000452182 PUS7Q96PZ0 661 aaKnown RBP16.22■□□□□ 0.19
SCN9A-204ENST00000452182 ATF3P18847 181 aa16.21■□□□□ 0.19
SCN9A-204ENST00000452182 TMF1P82094 1093 aa16.21■□□□□ 0.19
SCN9A-204ENST00000452182 SLC4A2P04920 1241 aa16.2■□□□□ 0.18
SCN9A-204ENST00000452182 CDK19Q9BWU1 502 aa16.2■□□□□ 0.18
SCN9A-204ENST00000452182 ANKARQ7Z5J8 1434 aa16.2■□□□□ 0.18
SCN9A-204ENST00000452182 DISP3Q9P2K9 1392 aa16.19■□□□□ 0.18
SCN9A-204ENST00000452182 CDCA8Q53HL2 280 aa16.19■□□□□ 0.18
SCN9A-204ENST00000452182 USP32Q8NFA0 1604 aa16.18■□□□□ 0.18
SCN9A-204ENST00000452182 MST1RQ04912 1400 aa16.18■□□□□ 0.18
SCN9A-204ENST00000452182 ATP7BP35670 1465 aa16.18■□□□□ 0.18
SCN9A-204ENST00000452182 ITSN1Q15811 1721 aa16.17■□□□□ 0.18
SCN9A-204ENST00000452182 SRPK2P78362 688 aaKnown RBP16.16■□□□□ 0.18
SCN9A-204ENST00000452182 ATAD2Q6PL18 1390 aa16.16■□□□□ 0.18
SCN9A-204ENST00000452182 RGPD8O14715 1765 aaPredicted RBP16.16■□□□□ 0.18
SCN9A-204ENST00000452182 TOPAZ1Q8N9V7 1692 aa16.16■□□□□ 0.18
SCN9A-204ENST00000452182 C1orf167Q5SNV9 1468 aa16.16■□□□□ 0.18
SCN9A-204ENST00000452182 CABP2Q9NPB3 220 aa16.15■□□□□ 0.18
SCN9A-204ENST00000452182 SLAIN2Q9P270 581 aa16.15■□□□□ 0.18
SCN9A-204ENST00000452182 PRR36Q9H6K5 1346 aa16.14■□□□□ 0.17
SCN9A-204ENST00000452182 TOM1O60784 492 aa16.14■□□□□ 0.17
SCN9A-204ENST00000452182 NUDT16Q96DE0 195 aaKnown RBP16.14■□□□□ 0.17
SCN9A-204ENST00000452182 CCDC61Q9Y6R9 512 aa16.14■□□□□ 0.17
SCN9A-204ENST00000452182 C11orf95C9JLR9 678 aaPredicted RBP16.13■□□□□ 0.17
SCN9A-204ENST00000452182 NINLQ9Y2I6 1382 aa16.12■□□□□ 0.17
SCN9A-204ENST00000452182 KIF1AQ12756 1690 aa16.11■□□□□ 0.17
SCN9A-204ENST00000452182 KIF7Q2M1P5 1343 aa16.11■□□□□ 0.17
SCN9A-204ENST00000452182 NUTM2FA1L443 756 aa16.11■□□□□ 0.17
SCN9A-204ENST00000452182 PPIP5K1Q6PFW1 1433 aa16.1■□□□□ 0.17
SCN9A-204ENST00000452182 MYOM1P52179 1685 aa16.1■□□□□ 0.17
SCN9A-204ENST00000452182 CCDC7Q96M83 1385 aa16.09■□□□□ 0.17
SCN9A-204ENST00000452182 PLEKHG3A1L390 1219 aa16.09■□□□□ 0.17
SCN9A-204ENST00000452182 UBAP1LF5GYI3 381 aa16.09■□□□□ 0.17
SCN9A-204ENST00000452182 WASHC2AQ641Q2 1341 aa16.09■□□□□ 0.17
SCN9A-204ENST00000452182 ESCO1Q5FWF5 840 aa16.08■□□□□ 0.17
SCN9A-204ENST00000452182 ORAI2Q96SN7 254 aa16.08■□□□□ 0.17
SCN9A-204ENST00000452182 ROBO1Q9Y6N7 1651 aa16.08■□□□□ 0.17
SCN9A-204ENST00000452182 BRINP3Q76B58 766 aa16.08■□□□□ 0.16
SCN9A-204ENST00000452182 PHF8Q9UPP1 1060 aa16.08■□□□□ 0.16
SCN9A-204ENST00000452182 POLR3AO14802 1390 aaPredicted RBP16.07■□□□□ 0.16
SCN9A-204ENST00000452182 CABP1Q9NZU7 370 aa16.07■□□□□ 0.16
SCN9A-204ENST00000452182 ZNF316A6NFI3 1004 aaPredicted RBP16.06■□□□□ 0.16
SCN9A-204ENST00000452182 NHSL1Q5SYE7 1610 aa16.06■□□□□ 0.16
SCN9A-204ENST00000452182 AKAP12Q02952 1782 aa16.05■□□□□ 0.16
SCN9A-204ENST00000452182 CPSF1Q10570 1443 aaKnown RBP16.05■□□□□ 0.16
SCN9A-204ENST00000452182 CD163L1Q9NR16 1453 aa16.05■□□□□ 0.16
SCN9A-204ENST00000452182 SLC12A5Q9H2X9 1139 aa16.05■□□□□ 0.16
SCN9A-204ENST00000452182 PMFBP1Q8TBY8 1022 aa16.04■□□□□ 0.16
SCN9A-204ENST00000452182 TMC1Q8TDI8 760 aa16.04■□□□□ 0.16
SCN9A-204ENST00000452182 ACEP12821 1306 aa16.04■□□□□ 0.16
SCN9A-204ENST00000452182 AHDC1Q5TGY3 1603 aaPredicted RBP16.03■□□□□ 0.16
SCN9A-204ENST00000452182 POLR3GLQ9BT43 218 aa16.03■□□□□ 0.16
SCN9A-204ENST00000452182 ZNF692Q9BU19 519 aaPredicted RBP16.03■□□□□ 0.16
SCN9A-204ENST00000452182 TERF2IPQ9NYB0 399 aa16.03■□□□□ 0.16
SCN9A-204ENST00000452182 NPHP3Q7Z494 1330 aa16.03■□□□□ 0.16
SCN9A-204ENST00000452182 ANKRD36BQ8N2N9 1353 aa16.03■□□□□ 0.16
SCN9A-204ENST00000452182 MON2Q7Z3U7 1717 aa16.02■□□□□ 0.16
SCN9A-204ENST00000452182 NGDNQ8NEJ9 315 aaKnown RBP16.02■□□□□ 0.16
SCN9A-204ENST00000452182 FOXO3O43524 673 aa16.01■□□□□ 0.15
SCN9A-204ENST00000452182 MYCNP04198 464 aaPredicted RBP16.01■□□□□ 0.15
SCN9A-204ENST00000452182 PIP4K2BP78356 416 aa16.01■□□□□ 0.15
SCN9A-204ENST00000452182 BRD4O60885 1362 aaPredicted RBP16.01■□□□□ 0.15
SCN9A-204ENST00000452182 A0A1W2PP64 1363 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms