RNA–Protein interactions for RNA: ENST00000450169.6

LSM5-208, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM5, Length 2,258 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-208ENST00000450169 MAGI3Q5TCQ9 1506 aa10.84□□□□□ -0.67
LSM5-208ENST00000450169 ZMYM3Q14202 1370 aa10.84□□□□□ -0.67
LSM5-208ENST00000450169 ST20-MTHFSA0A0A6YYL1 179 aa10.83□□□□□ -0.68
LSM5-208ENST00000450169 ZNF500O60304 480 aaPredicted RBP10.83□□□□□ -0.68
LSM5-208ENST00000450169 CHMP4BQ9H444 224 aaKnown RBP10.83□□□□□ -0.68
LSM5-208ENST00000450169 PLEKHH1Q9ULM0 1364 aa10.83□□□□□ -0.68
LSM5-208ENST00000450169 GOLGA2Q08379 1002 aa10.83□□□□□ -0.68
LSM5-208ENST00000450169 HS1BP3Q53T59 392 aa10.83□□□□□ -0.68
LSM5-208ENST00000450169 KIF20AO95235 890 aa10.82□□□□□ -0.68
LSM5-208ENST00000450169 TAF7LQ5H9L4 462 aa10.82□□□□□ -0.68
LSM5-208ENST00000450169 GBP4Q96PP9 640 aa10.82□□□□□ -0.68
LSM5-208ENST00000450169 CCDC144AA2RUR9 1427 aa10.82□□□□□ -0.68
LSM5-208ENST00000450169 UHRF1BP1Q6BDS2 1440 aa10.82□□□□□ -0.68
LSM5-208ENST00000450169 CGNL1Q0VF96 1302 aa10.82□□□□□ -0.68
LSM5-208ENST00000450169 PTMSP20962 102 aa10.82□□□□□ -0.68
LSM5-208ENST00000450169 NEUROD2Q15784 382 aa10.82□□□□□ -0.68
LSM5-208ENST00000450169 IPO4Q8TEX9 1081 aaKnown RBP10.82□□□□□ -0.68
LSM5-208ENST00000450169 NOL7Q9UMY1 257 aaKnown RBP10.82□□□□□ -0.68
LSM5-208ENST00000450169 PYGBP11216 843 aa10.81□□□□□ -0.68
LSM5-208ENST00000450169 XPCQ01831 940 aaPredicted RBP10.81□□□□□ -0.68
LSM5-208ENST00000450169 CHMP7Q8WUX9 453 aaPredicted RBP10.81□□□□□ -0.68
LSM5-208ENST00000450169 GTPBP4Q9BZE4 634 aaKnown RBP10.81□□□□□ -0.68
LSM5-208ENST00000450169 CDK13Q14004 1512 aaKnown RBP10.81□□□□□ -0.68
LSM5-208ENST00000450169 ZNF521Q96K83 1311 aa10.81□□□□□ -0.68
LSM5-208ENST00000450169 CSPP1Q1MSJ5 1256 aa10.81□□□□□ -0.68
LSM5-208ENST00000450169 HSCBQ8IWL3 235 aa10.81□□□□□ -0.68
LSM5-208ENST00000450169 TNPO1Q92973 898 aaKnown RBP10.81□□□□□ -0.68
LSM5-208ENST00000450169 CLUAP1Q96AJ1 413 aa10.81□□□□□ -0.68
LSM5-208ENST00000450169 ROCK1Q13464 1354 aa10.8□□□□□ -0.68
LSM5-208ENST00000450169 NCOA3Q9Y6Q9 1424 aa10.8□□□□□ -0.68
LSM5-208ENST00000450169 EPRSP07814 1512 aaKnown RBP10.8□□□□□ -0.68
LSM5-208ENST00000450169 PER1O15534 1290 aaPredicted RBP10.8□□□□□ -0.68
LSM5-208ENST00000450169 DDIT3P35638 169 aa10.8□□□□□ -0.68
LSM5-208ENST00000450169 RASEFQ8IZ41 740 aa10.8□□□□□ -0.68
LSM5-208ENST00000450169 ADAMTS8Q9UP79 889 aa10.8□□□□□ -0.68
LSM5-208ENST00000450169 RTEL1-TNFRSF6BF6WH68 1400 aa10.8□□□□□ -0.68
LSM5-208ENST00000450169 LETM1O95202 739 aaPredicted RBP10.79□□□□□ -0.68
LSM5-208ENST00000450169 CC2D1BQ5T0F9 858 aaKnown RBP10.79□□□□□ -0.68
LSM5-208ENST00000450169 SASS6Q6UVJ0 657 aa10.79□□□□□ -0.68
LSM5-208ENST00000450169 FAM212AQ96EL1 285 aa10.79□□□□□ -0.68
LSM5-208ENST00000450169 C22orf23Q9BZE7 217 aa10.79□□□□□ -0.68
LSM5-208ENST00000450169 NUP160Q12769 1436 aa10.79□□□□□ -0.68
LSM5-208ENST00000450169 SCAPERQ9BY12 1400 aa10.79□□□□□ -0.68
LSM5-208ENST00000450169 IBTKQ9P2D0 1353 aaPredicted RBP10.79□□□□□ -0.68
LSM5-208ENST00000450169 ARID3CA6NKF2 412 aa10.79□□□□□ -0.68
LSM5-208ENST00000450169 SLC24A3Q9HC58 644 aa10.79□□□□□ -0.68
LSM5-208ENST00000450169 TMEM51Q9NW97 253 aa10.79□□□□□ -0.68
LSM5-208ENST00000450169 PZPP20742 1482 aa10.78□□□□□ -0.68
LSM5-208ENST00000450169 BCAR3O75815 825 aa10.78□□□□□ -0.68
LSM5-208ENST00000450169 SLFN5Q08AF3 891 aa10.78□□□□□ -0.68
LSM5-208ENST00000450169 WDR70Q9NW82 654 aa10.78□□□□□ -0.68
LSM5-208ENST00000450169 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.78□□□□□ -0.68
LSM5-208ENST00000450169 NKTRP30414 1462 aaKnown RBP10.77□□□□□ -0.68
LSM5-208ENST00000450169 PDE3AQ14432 1141 aa10.77□□□□□ -0.69
LSM5-208ENST00000450169 ZC3H15Q8WU90 426 aaKnown RBP10.77□□□□□ -0.69
LSM5-208ENST00000450169 KIAA1107Q9UPP5 1409 aa10.77□□□□□ -0.69
LSM5-208ENST00000450169 NINLQ9Y2I6 1382 aa10.76□□□□□ -0.69
LSM5-208ENST00000450169 RAB3GAP1Q15042 981 aa10.76□□□□□ -0.69
LSM5-208ENST00000450169 ZKSCAN5Q9Y2L8 839 aa10.76□□□□□ -0.69
LSM5-208ENST00000450169 CLASP1Q7Z460 1538 aa10.76□□□□□ -0.69
LSM5-208ENST00000450169 DAPK1P53355 1430 aa10.76□□□□□ -0.69
LSM5-208ENST00000450169 RAPGEF6Q8TEU7 1601 aa10.76□□□□□ -0.69
LSM5-208ENST00000450169 MCM5P33992 734 aa10.75□□□□□ -0.69
LSM5-208ENST00000450169 MFAP1P55081 439 aaKnown RBP10.75□□□□□ -0.69
LSM5-208ENST00000450169 TRMT2AQ8IZ69 625 aaKnown RBP10.75□□□□□ -0.69
LSM5-208ENST00000450169 PMFBP1Q8TBY8 1022 aa10.75□□□□□ -0.69
LSM5-208ENST00000450169 NUP153P49790 1475 aaKnown RBP10.75□□□□□ -0.69
LSM5-208ENST00000450169 MNX1P50219 401 aaPredicted RBP10.75□□□□□ -0.69
LSM5-208ENST00000450169 WDR43Q15061 677 aaKnown RBP eCLIP10.75□□□□□ -0.69
LSM5-208ENST00000450169 ARHGEF12Q9NZN5 1544 aa10.75□□□□□ -0.69
LSM5-208ENST00000450169 TAF3Q5VWG9 929 aa10.74□□□□□ -0.69
LSM5-208ENST00000450169 SMC5Q8IY18 1101 aa10.74□□□□□ -0.69
LSM5-208ENST00000450169 PDLIM2Q96JY6 352 aa10.74□□□□□ -0.69
LSM5-208ENST00000450169 PDZRN3Q9UPQ7 1066 aa10.74□□□□□ -0.69
LSM5-208ENST00000450169 COG6Q9Y2V7 657 aa10.74□□□□□ -0.69
LSM5-208ENST00000450169 CBX1P83916 185 aa10.74□□□□□ -0.69
LSM5-208ENST00000450169 CHD1O14646 1710 aa10.74□□□□□ -0.69
LSM5-208ENST00000450169 GOLGA6L22H0YM25 854 aa10.73□□□□□ -0.69
LSM5-208ENST00000450169 KLHL40Q2TBA0 621 aa10.73□□□□□ -0.69
LSM5-208ENST00000450169 ANKRD30AQ9BXX3 1397 aa10.73□□□□□ -0.69
LSM5-208ENST00000450169 PLB1Q6P1J6 1458 aa10.73□□□□□ -0.69
LSM5-208ENST00000450169 PANK1Q8TE04 598 aa10.73□□□□□ -0.69
LSM5-208ENST00000450169 PANK3Q9H999 370 aa10.73□□□□□ -0.69
LSM5-208ENST00000450169 DDX49Q9Y6V7 483 aaKnown RBP10.72□□□□□ -0.69
LSM5-208ENST00000450169 DNMT1P26358 1616 aaKnown RBP10.72□□□□□ -0.69
LSM5-208ENST00000450169 VGLL3A8MV65 326 aa10.72□□□□□ -0.69
LSM5-208ENST00000450169 ZNF445P59923 1031 aa10.72□□□□□ -0.69
LSM5-208ENST00000450169 MYRIPQ8NFW9 859 aa10.72□□□□□ -0.69
LSM5-208ENST00000450169 SNX21Q969T3 373 aa10.72□□□□□ -0.69
LSM5-208ENST00000450169 JPH4Q96JJ6 628 aa10.72□□□□□ -0.69
LSM5-208ENST00000450169 RYDENQ9NUL5 291 aaKnown RBP10.72□□□□□ -0.69
LSM5-208ENST00000450169 ABCC5O15440 1437 aa10.71□□□□□ -0.69
LSM5-208ENST00000450169 SEMA3EO15041 775 aa10.71□□□□□ -0.69
LSM5-208ENST00000450169 HSP90AB1P08238 724 aaKnown RBP10.71□□□□□ -0.69
LSM5-208ENST00000450169 SGIP1Q9BQI5 828 aa10.71□□□□□ -0.69
LSM5-208ENST00000450169 CREBZFQ9NS37 354 aa10.71□□□□□ -0.69
LSM5-208ENST00000450169 ZNF830Q96NB3 372 aaPredicted RBP10.7□□□□□ -0.7
LSM5-208ENST00000450169 E9PSI1 815 aa10.7□□□□□ -0.7
LSM5-208ENST00000450169 ZNF710Q8N1W2 664 aa10.7□□□□□ -0.7
LSM5-208ENST00000450169 CCDC39Q9UFE4 941 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms