RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 EXOC6Q8TAG9 804 aa9.29□□□□□ -0.92
SYNE1-213ENST00000448038 CRBNQ96SW2 442 aa9.29□□□□□ -0.92
SYNE1-213ENST00000448038 USP35Q9P2H5 1018 aa9.29□□□□□ -0.92
SYNE1-213ENST00000448038 GAS2L2Q8NHY3 880 aa9.28□□□□□ -0.92
SYNE1-213ENST00000448038 NAP1L2Q9ULW6 460 aaPredicted RBP9.28□□□□□ -0.92
SYNE1-213ENST00000448038 SCAF11Q99590 1463 aaKnown RBP9.28□□□□□ -0.92
SYNE1-213ENST00000448038 KIAA1211Q6ZU35 1233 aa9.28□□□□□ -0.92
SYNE1-213ENST00000448038 RRS1Q15050 365 aaKnown RBP9.28□□□□□ -0.92
SYNE1-213ENST00000448038 SULT6B1Q6IMI4 303 aa9.28□□□□□ -0.92
SYNE1-213ENST00000448038 RBM33Q96EV2 1170 aaKnown RBP9.28□□□□□ -0.92
SYNE1-213ENST00000448038 DNMT1P26358 1616 aaKnown RBP9.28□□□□□ -0.92
SYNE1-213ENST00000448038 NEXNQ0ZGT2 675 aa9.28□□□□□ -0.92
SYNE1-213ENST00000448038 GPATCH3Q96I76 525 aa9.28□□□□□ -0.92
SYNE1-213ENST00000448038 API5Q9BZZ5 524 aaKnown RBP9.28□□□□□ -0.92
SYNE1-213ENST00000448038 SMG6Q86US8 1419 aaKnown RBP9.27□□□□□ -0.92
SYNE1-213ENST00000448038 WASLO00401 505 aaPredicted RBP9.27□□□□□ -0.92
SYNE1-213ENST00000448038 PNISRQ8TF01 805 aaKnown RBP9.27□□□□□ -0.92
SYNE1-213ENST00000448038 STRN4Q9NRL3 753 aa9.27□□□□□ -0.92
SYNE1-213ENST00000448038 PLEKHO1Q53GL0 409 aaPredicted RBP9.27□□□□□ -0.93
SYNE1-213ENST00000448038 DZIP1LQ8IYY4 767 aaKnown RBP9.27□□□□□ -0.93
SYNE1-213ENST00000448038 TAOK2Q9UL54 1235 aa9.27□□□□□ -0.93
SYNE1-213ENST00000448038 MAPKBP1O60336 1514 aa9.27□□□□□ -0.93
SYNE1-213ENST00000448038 UHRF1BP1LA0JNW5 1464 aa9.27□□□□□ -0.93
SYNE1-213ENST00000448038 FKBP5Q13451 457 aaPredicted RBP9.27□□□□□ -0.93
SYNE1-213ENST00000448038 HSCBQ8IWL3 235 aa9.27□□□□□ -0.93
SYNE1-213ENST00000448038 TRIM6-TRIM34B2RNG4 842 aa9.26□□□□□ -0.93
SYNE1-213ENST00000448038 CDCA7LQ96GN5 454 aa9.26□□□□□ -0.93
SYNE1-213ENST00000448038 TMX4Q9H1E5 349 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-213ENST00000448038 DDX19BQ9UMR2 479 aa9.26□□□□□ -0.93
SYNE1-213ENST00000448038 CCDC184Q52MB2 194 aa9.26□□□□□ -0.93
SYNE1-213ENST00000448038 DDX58O95786 925 aaKnown RBP9.26□□□□□ -0.93
SYNE1-213ENST00000448038 C9orf78Q9NZ63 289 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-213ENST00000448038 KIF16BQ96L93 1317 aa9.26□□□□□ -0.93
SYNE1-213ENST00000448038 CHD1O14646 1710 aa9.25□□□□□ -0.93
SYNE1-213ENST00000448038 CENPQQ7L2Z9 268 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-213ENST00000448038 MAGI3Q5TCQ9 1506 aa9.25□□□□□ -0.93
SYNE1-213ENST00000448038 PRDM11Q9NQV5 511 aa9.25□□□□□ -0.93
SYNE1-213ENST00000448038 TATP17735 454 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-213ENST00000448038 TPRNQ4KMQ1 711 aa9.25□□□□□ -0.93
SYNE1-213ENST00000448038 PHF8Q9UPP1 1060 aa9.24□□□□□ -0.93
SYNE1-213ENST00000448038 PIP4K2BP78356 416 aa9.24□□□□□ -0.93
SYNE1-213ENST00000448038 ANKRD45Q5TZF3 282 aa9.24□□□□□ -0.93
SYNE1-213ENST00000448038 TOM1L2Q6ZVM7 507 aa9.24□□□□□ -0.93
SYNE1-213ENST00000448038 ATP7AQ04656 1500 aa9.24□□□□□ -0.93
SYNE1-213ENST00000448038 ABCA8O94911 1581 aa9.24□□□□□ -0.93
SYNE1-213ENST00000448038 NUTM2BA6NNL0 878 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-213ENST00000448038 NUTM2EB1AL46 878 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-213ENST00000448038 NUTM2AQ8IVF1 878 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-213ENST00000448038 ZC3H6P61129 1189 aaKnown RBP9.24□□□□□ -0.93
SYNE1-213ENST00000448038 NME9Q86XW9 330 aa9.24□□□□□ -0.93
SYNE1-213ENST00000448038 FOXO3O43524 673 aa9.23□□□□□ -0.93
SYNE1-213ENST00000448038 NOP58Q9Y2X3 529 aaKnown RBP9.23□□□□□ -0.93
SYNE1-213ENST00000448038 RIMS2Q9UQ26 1411 aa9.23□□□□□ -0.93
SYNE1-213ENST00000448038 MFAP1P55081 439 aaKnown RBP9.23□□□□□ -0.93
SYNE1-213ENST00000448038 RBM19Q9Y4C8 960 aaKnown RBP9.23□□□□□ -0.93
SYNE1-213ENST00000448038 ZMYM3Q14202 1370 aa9.23□□□□□ -0.93
SYNE1-213ENST00000448038 ADGRL2O95490 1459 aa9.23□□□□□ -0.93
SYNE1-213ENST00000448038 DISP3Q9P2K9 1392 aa9.23□□□□□ -0.93
SYNE1-213ENST00000448038 EXOSC9Q06265 439 aaKnown RBP9.22□□□□□ -0.93
SYNE1-213ENST00000448038 KCNH5Q8NCM2 988 aa9.22□□□□□ -0.93
SYNE1-213ENST00000448038 ANP32EQ9BTT0 268 aa9.22□□□□□ -0.93
SYNE1-213ENST00000448038 MSH5O43196 834 aa9.22□□□□□ -0.93
SYNE1-213ENST00000448038 ZNF530Q6P9A1 599 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-213ENST00000448038 ATP10AO60312 1499 aa9.22□□□□□ -0.93
SYNE1-213ENST00000448038 AIMP1Q12904 312 aaKnown RBP9.22□□□□□ -0.93
SYNE1-213ENST00000448038 PRAG1Q86YV5 1406 aa9.22□□□□□ -0.93
SYNE1-213ENST00000448038 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.22□□□□□ -0.93
SYNE1-213ENST00000448038 SPRYD3Q8NCJ5 442 aa9.22□□□□□ -0.93
SYNE1-213ENST00000448038 FCHSD2O94868 740 aa9.21□□□□□ -0.93
SYNE1-213ENST00000448038 PANK1Q8TE04 598 aa9.21□□□□□ -0.93
SYNE1-213ENST00000448038 TSR2Q969E8 191 aaKnown RBP9.21□□□□□ -0.93
SYNE1-213ENST00000448038 RALGAPBQ86X10 1494 aa9.21□□□□□ -0.94
SYNE1-213ENST00000448038 PZPP20742 1482 aa9.21□□□□□ -0.94
SYNE1-213ENST00000448038 RIC3Q7Z5B4 369 aa9.21□□□□□ -0.94
SYNE1-213ENST00000448038 TWISTNBQ3B726 338 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-213ENST00000448038 NEO1Q92859 1461 aa9.2□□□□□ -0.94
SYNE1-213ENST00000448038 CCDC30Q5VVM6 783 aa9.2□□□□□ -0.94
SYNE1-213ENST00000448038 FRAT2O75474 233 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-213ENST00000448038 DDX54Q8TDD1 881 aaKnown RBP9.2□□□□□ -0.94
SYNE1-213ENST00000448038 SPG7Q9UQ90 795 aa9.2□□□□□ -0.94
SYNE1-213ENST00000448038 DMRT2Q9Y5R5 561 aa9.2□□□□□ -0.94
SYNE1-213ENST00000448038 WDR63Q8IWG1 891 aa9.2□□□□□ -0.94
SYNE1-213ENST00000448038 G3V3G9 751 aa9.19□□□□□ -0.94
SYNE1-213ENST00000448038 ZRSR1Q15695 479 aaKnown RBP9.19□□□□□ -0.94
SYNE1-213ENST00000448038 DCAF8Q5TAQ9 597 aa9.19□□□□□ -0.94
SYNE1-213ENST00000448038 MYO5CQ9NQX4 1742 aa9.19□□□□□ -0.94
SYNE1-213ENST00000448038 EMILIN1Q9Y6C2 1016 aa9.19□□□□□ -0.94
SYNE1-213ENST00000448038 RILPL2Q969X0 211 aa9.18□□□□□ -0.94
SYNE1-213ENST00000448038 ACEP12821 1306 aa9.18□□□□□ -0.94
SYNE1-213ENST00000448038 NINLQ9Y2I6 1382 aa9.18□□□□□ -0.94
SYNE1-213ENST00000448038 CABP4P57796 275 aa9.18□□□□□ -0.94
SYNE1-213ENST00000448038 TMPOP42166 694 aaKnown RBP9.18□□□□□ -0.94
SYNE1-213ENST00000448038 RBM42Q9BTD8 480 aaKnown RBP9.18□□□□□ -0.94
SYNE1-213ENST00000448038 NFE2L2Q16236 605 aa9.18□□□□□ -0.94
SYNE1-213ENST00000448038 ISY1Q9ULR0 285 aaKnown RBP9.18□□□□□ -0.94
SYNE1-213ENST00000448038 KRT28Q7Z3Y7 464 aa9.17□□□□□ -0.94
SYNE1-213ENST00000448038 CADPS2Q86UW7 1296 aa9.17□□□□□ -0.94
SYNE1-213ENST00000448038 MAST1Q9Y2H9 1570 aa9.17□□□□□ -0.94
SYNE1-213ENST00000448038 HDGFL1Q5TGJ6 251 aa9.17□□□□□ -0.94
SYNE1-213ENST00000448038 UBTFL1P0CB47 393 aaPredicted RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms