RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 RBM33Q96EV2 1170 aaKnown RBP22.17■■□□□ 1.14
USP40-206ENST00000443711 SLC24A1O60721 1099 aa22.16■■□□□ 1.14
USP40-206ENST00000443711 XIRP1Q702N8 1843 aaKnown RBP22.15■■□□□ 1.14
USP40-206ENST00000443711 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.15■■□□□ 1.14
USP40-206ENST00000443711 MINK1Q8N4C8 1332 aaPredicted RBP22.15■■□□□ 1.14
USP40-206ENST00000443711 SBNO2Q9Y2G9 1366 aa22.13■■□□□ 1.13
USP40-206ENST00000443711 ADGRL3Q9HAR2 1447 aa22.13■■□□□ 1.13
USP40-206ENST00000443711 TESK2Q96S53 571 aa22.12■■□□□ 1.13
USP40-206ENST00000443711 C19orf44Q9H6X5 657 aa22.12■■□□□ 1.13
USP40-206ENST00000443711 NALCNQ8IZF0 1738 aa22.11■■□□□ 1.13
USP40-206ENST00000443711 HIRIP3Q9BW71 556 aaPredicted RBP22.11■■□□□ 1.13
USP40-206ENST00000443711 MSH6P52701 1360 aa22.1■■□□□ 1.13
USP40-206ENST00000443711 ILDR1Q86SU0 546 aaPredicted RBP22.09■■□□□ 1.13
USP40-206ENST00000443711 EVC2Q86UK5 1308 aa22.08■■□□□ 1.13
USP40-206ENST00000443711 ADGRB2O60241 1585 aa22.08■■□□□ 1.13
USP40-206ENST00000443711 TMF1P82094 1093 aa22.08■■□□□ 1.13
USP40-206ENST00000443711 WASLO00401 505 aaPredicted RBP22.07■■□□□ 1.12
USP40-206ENST00000443711 CDC42BPGQ6DT37 1551 aa22.06■■□□□ 1.12
USP40-206ENST00000443711 ATF3P18847 181 aa22.05■■□□□ 1.12
USP40-206ENST00000443711 CERKQ8TCT0 537 aa22.05■■□□□ 1.12
USP40-206ENST00000443711 CDK19Q9BWU1 502 aa22.05■■□□□ 1.12
USP40-206ENST00000443711 DCCP43146 1447 aa22.05■■□□□ 1.12
USP40-206ENST00000443711 CADPS2Q86UW7 1296 aa22.04■■□□□ 1.12
USP40-206ENST00000443711 IQSEC2Q5JU85 1478 aa22.03■■□□□ 1.12
USP40-206ENST00000443711 TULP4Q9NRJ4 1543 aa22.03■■□□□ 1.12
USP40-206ENST00000443711 CDCA8Q53HL2 280 aa22.03■■□□□ 1.12
USP40-206ENST00000443711 SRPK2P78362 688 aaKnown RBP22.02■■□□□ 1.12
USP40-206ENST00000443711 FMN2Q9NZ56 1722 aa22.02■■□□□ 1.12
USP40-206ENST00000443711 PUS7Q96PZ0 661 aaKnown RBP22.01■■□□□ 1.11
USP40-206ENST00000443711 DISP3Q9P2K9 1392 aa22■■□□□ 1.11
USP40-206ENST00000443711 CABP2Q9NPB3 220 aa22■■□□□ 1.11
USP40-206ENST00000443711 NUTM2FA1L443 756 aa21.97■■□□□ 1.11
USP40-206ENST00000443711 NUDT16Q96DE0 195 aaKnown RBP21.97■■□□□ 1.11
USP40-206ENST00000443711 ANKARQ7Z5J8 1434 aa21.97■■□□□ 1.11
USP40-206ENST00000443711 C11orf95C9JLR9 678 aaPredicted RBP21.96■■□□□ 1.11
USP40-206ENST00000443711 RGPD8O14715 1765 aaPredicted RBP21.95■■□□□ 1.1
USP40-206ENST00000443711 TOM1O60784 492 aa21.95■■□□□ 1.1
USP40-206ENST00000443711 SLAIN2Q9P270 581 aa21.95■■□□□ 1.1
USP40-206ENST00000443711 ATAD2Q6PL18 1390 aa21.95■■□□□ 1.1
USP40-206ENST00000443711 MST1RQ04912 1400 aa21.95■■□□□ 1.1
USP40-206ENST00000443711 PRR36Q9H6K5 1346 aa21.94■■□□□ 1.1
USP40-206ENST00000443711 ZNF316A6NFI3 1004 aaPredicted RBP21.93■■□□□ 1.1
USP40-206ENST00000443711 C1orf167Q5SNV9 1468 aa21.93■■□□□ 1.1
USP40-206ENST00000443711 USP32Q8NFA0 1604 aa21.93■■□□□ 1.1
USP40-206ENST00000443711 POLR3GLQ9BT43 218 aa21.93■■□□□ 1.1
USP40-206ENST00000443711 CCDC61Q9Y6R9 512 aa21.93■■□□□ 1.1
USP40-206ENST00000443711 ATP7BP35670 1465 aa21.92■■□□□ 1.1
USP40-206ENST00000443711 KIF7Q2M1P5 1343 aa21.92■■□□□ 1.1
USP40-206ENST00000443711 ITSN1Q15811 1721 aa21.92■■□□□ 1.1
USP40-206ENST00000443711 CCDC7Q96M83 1385 aa21.9■■□□□ 1.1
USP40-206ENST00000443711 UBAP1LF5GYI3 381 aa21.9■■□□□ 1.1
USP40-206ENST00000443711 ESCO1Q5FWF5 840 aa21.9■■□□□ 1.1
USP40-206ENST00000443711 WASHC2AQ641Q2 1341 aa21.89■■□□□ 1.1
USP40-206ENST00000443711 TOPAZ1Q8N9V7 1692 aa21.88■■□□□ 1.09
USP40-206ENST00000443711 TMC1Q8TDI8 760 aa21.88■■□□□ 1.09
USP40-206ENST00000443711 ORAI2Q96SN7 254 aa21.88■■□□□ 1.09
USP40-206ENST00000443711 CABP1Q9NZU7 370 aa21.88■■□□□ 1.09
USP40-206ENST00000443711 PPIP5K1Q6PFW1 1433 aa21.88■■□□□ 1.09
USP40-206ENST00000443711 PLEKHG3A1L390 1219 aa21.87■■□□□ 1.09
USP40-206ENST00000443711 PHF8Q9UPP1 1060 aa21.87■■□□□ 1.09
USP40-206ENST00000443711 NINLQ9Y2I6 1382 aa21.87■■□□□ 1.09
USP40-206ENST00000443711 SLC12A5Q9H2X9 1139 aa21.85■■□□□ 1.09
USP40-206ENST00000443711 BRINP3Q76B58 766 aa21.84■■□□□ 1.09
USP40-206ENST00000443711 PMFBP1Q8TBY8 1022 aa21.84■■□□□ 1.09
USP40-206ENST00000443711 KIF1AQ12756 1690 aa21.84■■□□□ 1.09
USP40-206ENST00000443711 NGDNQ8NEJ9 315 aaKnown RBP21.83■■□□□ 1.09
USP40-206ENST00000443711 MYOM1P52179 1685 aa21.82■■□□□ 1.08
USP40-206ENST00000443711 TERF2IPQ9NYB0 399 aa21.82■■□□□ 1.08
USP40-206ENST00000443711 PIP4K2BP78356 416 aa21.81■■□□□ 1.08
USP40-206ENST00000443711 ACEP12821 1306 aa21.8■■□□□ 1.08
USP40-206ENST00000443711 HDGFL2Q7Z4V5 671 aaPredicted RBP21.8■■□□□ 1.08
USP40-206ENST00000443711 ZNF692Q9BU19 519 aaPredicted RBP21.8■■□□□ 1.08
USP40-206ENST00000443711 SCAF1Q9H7N4 1312 aaKnown RBP21.8■■□□□ 1.08
USP40-206ENST00000443711 ROBO1Q9Y6N7 1651 aa21.79■■□□□ 1.08
USP40-206ENST00000443711 POLR3AO14802 1390 aaPredicted RBP21.79■■□□□ 1.08
USP40-206ENST00000443711 FOXO3O43524 673 aa21.78■■□□□ 1.08
USP40-206ENST00000443711 PSME1Q06323 249 aa21.78■■□□□ 1.08
USP40-206ENST00000443711 AKAP12Q02952 1782 aa21.77■■□□□ 1.08
USP40-206ENST00000443711 NPHP3Q7Z494 1330 aa21.77■■□□□ 1.07
USP40-206ENST00000443711 ANKRD36BQ8N2N9 1353 aa21.76■■□□□ 1.07
USP40-206ENST00000443711 CPSF1Q10570 1443 aaKnown RBP21.76■■□□□ 1.07
USP40-206ENST00000443711 CD163L1Q9NR16 1453 aa21.76■■□□□ 1.07
USP40-206ENST00000443711 PANK3Q9H999 370 aa21.75■■□□□ 1.07
USP40-206ENST00000443711 KTN1Q86UP2 1357 aaKnown RBP21.74■■□□□ 1.07
USP40-206ENST00000443711 KRT28Q7Z3Y7 464 aa21.74■■□□□ 1.07
USP40-206ENST00000443711 FBXO41Q8TF61 875 aa21.74■■□□□ 1.07
USP40-206ENST00000443711 A0A1W2PP64 1363 aa21.74■■□□□ 1.07
USP40-206ENST00000443711 DDX10Q13206 875 aaKnown RBP21.73■■□□□ 1.07
USP40-206ENST00000443711 BRD4O60885 1362 aaPredicted RBP21.73■■□□□ 1.07
USP40-206ENST00000443711 NHSL1Q5SYE7 1610 aa21.73■■□□□ 1.07
USP40-206ENST00000443711 MON2Q7Z3U7 1717 aa21.72■■□□□ 1.07
USP40-206ENST00000443711 DDX17Q92841 729 aaKnown RBP21.72■■□□□ 1.07
USP40-206ENST00000443711 USP6P35125 1406 aa21.72■■□□□ 1.07
USP40-206ENST00000443711 AHDC1Q5TGY3 1603 aaPredicted RBP21.7■■□□□ 1.06
USP40-206ENST00000443711 XPCQ01831 940 aaPredicted RBP21.7■■□□□ 1.06
USP40-206ENST00000443711 CARD14Q9BXL6 1004 aa21.7■■□□□ 1.06
USP40-206ENST00000443711 SOS2Q07890 1332 aaPredicted RBP21.69■■□□□ 1.06
USP40-206ENST00000443711 EDC4Q6P2E9 1401 aaKnown RBP21.68■■□□□ 1.06
USP40-206ENST00000443711 PXDNQ92626 1479 aa21.68■■□□□ 1.06
USP40-206ENST00000443711 PHLPP1O60346 1717 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms