RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 OCEL1Q9H607 264 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 PRDM4Q9UKN5 801 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 RUSC2Q8N2Y8 1516 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 STRCQ7RTU9 1775 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 ALKQ9UM73 1620 aa3.57□□□□□ -1.84
LIG4-203ENST00000442234 UTRNP46939 3433 aa3.56□□□□□ -1.84
LIG4-203ENST00000442234 KAT6BQ8WYB5 2073 aa3.56□□□□□ -1.84
LIG4-203ENST00000442234 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP3.56□□□□□ -1.84
LIG4-203ENST00000442234 NLRP6P59044 892 aa3.56□□□□□ -1.84
LIG4-203ENST00000442234 ZC3H6P61129 1189 aaKnown RBP3.56□□□□□ -1.84
LIG4-203ENST00000442234 EN1Q05925 392 aaPredicted RBP3.56□□□□□ -1.84
LIG4-203ENST00000442234 L3MBTL3Q96JM7 780 aaPredicted RBP3.56□□□□□ -1.84
LIG4-203ENST00000442234 USP21Q9UK80 565 aa3.56□□□□□ -1.84
LIG4-203ENST00000442234 YEATS2Q9ULM3 1422 aa3.56□□□□□ -1.84
LIG4-203ENST00000442234 ZBTB7AO95365 584 aa3.56□□□□□ -1.84
LIG4-203ENST00000442234 CLCN1P35523 988 aa3.56□□□□□ -1.84
LIG4-203ENST00000442234 PCDHB8Q9UN66 801 aa3.56□□□□□ -1.84
LIG4-203ENST00000442234 DCAF11Q8TEB1 546 aa3.55□□□□□ -1.84
LIG4-203ENST00000442234 TOP2BQ02880 1626 aa3.55□□□□□ -1.84
LIG4-203ENST00000442234 AFF2P51816 1311 aa3.55□□□□□ -1.84
LIG4-203ENST00000442234 ABCC10Q5T3U5 1492 aa3.55□□□□□ -1.84
LIG4-203ENST00000442234 CHRNA2Q15822 529 aa3.55□□□□□ -1.84
LIG4-203ENST00000442234 FAM98CQ17RN3 349 aaKnown RBP3.55□□□□□ -1.84
LIG4-203ENST00000442234 SMAP1Q8IYB5 467 aaPredicted RBP3.55□□□□□ -1.84
LIG4-203ENST00000442234 ZNF330Q9Y3S2 320 aaPredicted RBP3.55□□□□□ -1.84
LIG4-203ENST00000442234 PTMAP06454 111 aaKnown RBP3.55□□□□□ -1.84
LIG4-203ENST00000442234 FAM193AP78312 1265 aa3.55□□□□□ -1.84
LIG4-203ENST00000442234 PPP4R3BQ5MIZ7 849 aa3.55□□□□□ -1.84
LIG4-203ENST00000442234 POGKQ9P215 609 aa3.55□□□□□ -1.84
LIG4-203ENST00000442234 TRPC6Q9Y210 931 aa3.55□□□□□ -1.84
LIG4-203ENST00000442234 POTEFA5A3E0 1075 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 GOLGA6L3A6NEY3 463 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 PTPRMP28827 1452 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 CENPJQ9HC77 1338 aaPredicted RBP3.54□□□□□ -1.84
LIG4-203ENST00000442234 GOLGB1Q14789 3259 aaKnown RBP3.54□□□□□ -1.84
LIG4-203ENST00000442234 CUX1P39880 1505 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 SLC4A3P48751 1232 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 KIAA1211Q6ZU35 1233 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 ZNF830Q96NB3 372 aaPredicted RBP3.54□□□□□ -1.84
LIG4-203ENST00000442234 MYH16Q9H6N6 1097 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 SLAIN2Q9P270 581 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 NPHP1O15259 732 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 FRAT2O75474 233 aaPredicted RBP3.54□□□□□ -1.84
LIG4-203ENST00000442234 PDE3BQ13370 1112 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 PDCD7Q8N8D1 485 aaKnown RBP3.54□□□□□ -1.84
LIG4-203ENST00000442234 MAGI1Q96QZ7 1491 aaPredicted RBP3.54□□□□□ -1.84
LIG4-203ENST00000442234 TOP2AP11388 1531 aaKnown RBP3.54□□□□□ -1.84
LIG4-203ENST00000442234 GLI2P10070 1586 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 CEP170Q5SW79 1584 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 FRMPD1Q5SYB0 1578 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 BIVM-ERCC5R4GMW8 1640 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 EEA1Q15075 1411 aa3.54□□□□□ -1.84
LIG4-203ENST00000442234 TRIM37O94972 964 aa3.53□□□□□ -1.84
LIG4-203ENST00000442234 MTERF4Q7Z6M4 381 aaKnown RBP3.53□□□□□ -1.84
LIG4-203ENST00000442234 CCER2I3L3R5 266 aa3.53□□□□□ -1.84
LIG4-203ENST00000442234 MSNP26038 577 aaKnown RBP3.53□□□□□ -1.84
LIG4-203ENST00000442234 CGNQ9P2M7 1197 aaKnown RBP3.53□□□□□ -1.84
LIG4-203ENST00000442234 HDAC5Q9UQL6 1122 aa3.53□□□□□ -1.84
LIG4-203ENST00000442234 ADCY10Q96PN6 1610 aa3.53□□□□□ -1.84
LIG4-203ENST00000442234 CLGNO14967 610 aa3.53□□□□□ -1.84
LIG4-203ENST00000442234 APBA3O96018 575 aa3.53□□□□□ -1.84
LIG4-203ENST00000442234 TNNT3P45378 269 aaPredicted RBP3.53□□□□□ -1.84
LIG4-203ENST00000442234 KCNQ4P56696 695 aa3.53□□□□□ -1.84
LIG4-203ENST00000442234 PSME1Q06323 249 aa3.53□□□□□ -1.84
LIG4-203ENST00000442234 NGDNQ8NEJ9 315 aaKnown RBP3.53□□□□□ -1.84
LIG4-203ENST00000442234 UPF1Q92900 1129 aaKnown RBP eCLIP3.53□□□□□ -1.84
LIG4-203ENST00000442234 TRIM35Q9UPQ4 493 aa3.53□□□□□ -1.84
LIG4-203ENST00000442234 CEP350Q5VT06 3117 aa3.53□□□□□ -1.84
LIG4-203ENST00000442234 ESPNB1AK53 854 aa3.53□□□□□ -1.85
LIG4-203ENST00000442234 MKRN3Q13064 507 aaKnown RBP3.53□□□□□ -1.85
LIG4-203ENST00000442234 TAF3Q5VWG9 929 aa3.53□□□□□ -1.85
LIG4-203ENST00000442234 TMEM132EQ6IEE7 984 aa3.53□□□□□ -1.85
LIG4-203ENST00000442234 GZF1Q9H116 711 aaPredicted RBP3.53□□□□□ -1.85
LIG4-203ENST00000442234 METRNQ9UJH8 293 aa3.53□□□□□ -1.85
LIG4-203ENST00000442234 XIRP1Q702N8 1843 aaKnown RBP3.52□□□□□ -1.85
LIG4-203ENST00000442234 MAPKBP1O60336 1514 aa3.52□□□□□ -1.85
LIG4-203ENST00000442234 KCNA6P17658 529 aa3.52□□□□□ -1.85
LIG4-203ENST00000442234 CC2D1BQ5T0F9 858 aaKnown RBP3.52□□□□□ -1.85
LIG4-203ENST00000442234 ORAI2Q96SN7 254 aa3.52□□□□□ -1.85
LIG4-203ENST00000442234 CCNB3Q8WWL7 1395 aa3.52□□□□□ -1.85
LIG4-203ENST00000442234 DNMBPQ6XZF7 1577 aa3.52□□□□□ -1.85
LIG4-203ENST00000442234 PDE4AP27815 886 aa3.52□□□□□ -1.85
LIG4-203ENST00000442234 ZNF771Q7L3S4 317 aaPredicted RBP3.52□□□□□ -1.85
LIG4-203ENST00000442234 CERS3Q8IU89 383 aa3.52□□□□□ -1.85
LIG4-203ENST00000442234 ACSBG1Q96GR2 724 aa3.52□□□□□ -1.85
LIG4-203ENST00000442234 SIN3AQ96ST3 1273 aa3.52□□□□□ -1.85
LIG4-203ENST00000442234 AKNAQ7Z591 1439 aa3.52□□□□□ -1.85
LIG4-203ENST00000442234 DENND4BO75064 1496 aaPredicted RBP3.52□□□□□ -1.85
LIG4-203ENST00000442234 TCERG1O14776 1098 aaKnown RBP3.52□□□□□ -1.85
LIG4-203ENST00000442234 MFRPQ9BY79 579 aa3.52□□□□□ -1.85
LIG4-203ENST00000442234 TEX14Q8IWB6 1497 aa3.51□□□□□ -1.85
LIG4-203ENST00000442234 ZMYM3Q14202 1370 aa3.51□□□□□ -1.85
LIG4-203ENST00000442234 LTKP29376 864 aa3.51□□□□□ -1.85
LIG4-203ENST00000442234 MSL1Q68DK7 614 aa3.51□□□□□ -1.85
LIG4-203ENST00000442234 ZNF772Q68DY9 489 aaPredicted RBP3.51□□□□□ -1.85
LIG4-203ENST00000442234 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.51□□□□□ -1.85
LIG4-203ENST00000442234 BAG6P46379 1132 aa3.51□□□□□ -1.85
LIG4-203ENST00000442234 FAM9BQ8IZU0 186 aa3.51□□□□□ -1.85
LIG4-203ENST00000442234 MS4A4AQ96JQ5 239 aa3.51□□□□□ -1.85
LIG4-203ENST00000442234 PRDM11Q9NQV5 511 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms