RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 ZNF335Q9H4Z2 1342 aaPredicted RBP17.72■□□□□ 0.43
SCLT1-202ENST00000439369 ZNF316A6NFI3 1004 aaPredicted RBP17.72■□□□□ 0.43
SCLT1-202ENST00000439369 PROSER2Q86WR7 435 aaPredicted RBP17.72■□□□□ 0.43
SCLT1-202ENST00000439369 ADGRL3Q9HAR2 1447 aa17.72■□□□□ 0.43
SCLT1-202ENST00000439369 EVC2Q86UK5 1308 aa17.72■□□□□ 0.43
SCLT1-202ENST00000439369 CDC42BPGQ6DT37 1551 aa17.7■□□□□ 0.42
SCLT1-202ENST00000439369 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.7■□□□□ 0.42
SCLT1-202ENST00000439369 LRRC7Q96NW7 1537 aa17.7■□□□□ 0.42
SCLT1-202ENST00000439369 TULP4Q9NRJ4 1543 aa17.69■□□□□ 0.42
SCLT1-202ENST00000439369 DCCP43146 1447 aa17.69■□□□□ 0.42
SCLT1-202ENST00000439369 MINK1Q8N4C8 1332 aaPredicted RBP17.69■□□□□ 0.42
SCLT1-202ENST00000439369 LTBP4Q8N2S1 1624 aa17.69■□□□□ 0.42
SCLT1-202ENST00000439369 TMEM94Q12767 1356 aa17.68■□□□□ 0.42
SCLT1-202ENST00000439369 SAFB2Q14151 953 aaKnown RBP eCLIP17.68■□□□□ 0.421e-6■■■■□ 19.9
SCLT1-202ENST00000439369 HIRIP3Q9BW71 556 aaPredicted RBP17.68■□□□□ 0.42
SCLT1-202ENST00000439369 DISP3Q9P2K9 1392 aa17.67■□□□□ 0.42
SCLT1-202ENST00000439369 NALCNQ8IZF0 1738 aa17.67■□□□□ 0.42
SCLT1-202ENST00000439369 CCDC7Q96M83 1385 aa17.66■□□□□ 0.42
SCLT1-202ENST00000439369 WASLO00401 505 aaPredicted RBP17.66■□□□□ 0.42
SCLT1-202ENST00000439369 C19orf44Q9H6X5 657 aa17.66■□□□□ 0.42
SCLT1-202ENST00000439369 ATAD2Q6PL18 1390 aa17.65■□□□□ 0.42
SCLT1-202ENST00000439369 ANKARQ7Z5J8 1434 aa17.64■□□□□ 0.42
SCLT1-202ENST00000439369 KIF7Q2M1P5 1343 aa17.64■□□□□ 0.41
SCLT1-202ENST00000439369 WASHC2AQ641Q2 1341 aa17.64■□□□□ 0.41
SCLT1-202ENST00000439369 NINLQ9Y2I6 1382 aa17.64■□□□□ 0.41
SCLT1-202ENST00000439369 C11orf95C9JLR9 678 aaPredicted RBP17.63■□□□□ 0.41
SCLT1-202ENST00000439369 C14orf37Q86TY3 774 aa17.63■□□□□ 0.41
SCLT1-202ENST00000439369 CDK19Q9BWU1 502 aa17.63■□□□□ 0.41
SCLT1-202ENST00000439369 MSH6P52701 1360 aa17.63■□□□□ 0.41
SCLT1-202ENST00000439369 XIRP1Q702N8 1843 aaKnown RBP17.63■□□□□ 0.41
SCLT1-202ENST00000439369 FMN2Q9NZ56 1722 aa17.62■□□□□ 0.41
SCLT1-202ENST00000439369 SRPK2P78362 688 aaKnown RBP17.61■□□□□ 0.41
SCLT1-202ENST00000439369 IQSEC2Q5JU85 1478 aa17.61■□□□□ 0.41
SCLT1-202ENST00000439369 CADPS2Q86UW7 1296 aa17.6■□□□□ 0.41
SCLT1-202ENST00000439369 ATP7BP35670 1465 aa17.59■□□□□ 0.41
SCLT1-202ENST00000439369 ATF3P18847 181 aa17.58■□□□□ 0.4
SCLT1-202ENST00000439369 NUDT16Q96DE0 195 aaKnown RBP17.57■□□□□ 0.4
SCLT1-202ENST00000439369 RBM33Q96EV2 1170 aaKnown RBP17.57■□□□□ 0.4
SCLT1-202ENST00000439369 CABP2Q9NPB3 220 aa17.57■□□□□ 0.4
SCLT1-202ENST00000439369 CCDC61Q9Y6R9 512 aa17.57■□□□□ 0.4
SCLT1-202ENST00000439369 ITSN1Q15811 1721 aa17.57■□□□□ 0.4
SCLT1-202ENST00000439369 MYOM1P52179 1685 aa17.56■□□□□ 0.4
SCLT1-202ENST00000439369 TOPAZ1Q8N9V7 1692 aa17.56■□□□□ 0.4
SCLT1-202ENST00000439369 USP32Q8NFA0 1604 aa17.55■□□□□ 0.4
SCLT1-202ENST00000439369 PHF23Q9BUL5 403 aaPredicted RBP17.55■□□□□ 0.4
SCLT1-202ENST00000439369 PRR36Q9H6K5 1346 aa17.54■□□□□ 0.4
SCLT1-202ENST00000439369 MST1RQ04912 1400 aa17.54■□□□□ 0.4
SCLT1-202ENST00000439369 PPIP5K1Q6PFW1 1433 aa17.53■□□□□ 0.4
SCLT1-202ENST00000439369 C1orf167Q5SNV9 1468 aa17.52■□□□□ 0.4
SCLT1-202ENST00000439369 PLEKHG3A1L390 1219 aa17.52■□□□□ 0.4
SCLT1-202ENST00000439369 POLR3GLQ9BT43 218 aa17.52■□□□□ 0.4
SCLT1-202ENST00000439369 TERF2IPQ9NYB0 399 aa17.51■□□□□ 0.39
SCLT1-202ENST00000439369 ANKRD36BQ8N2N9 1353 aa17.51■□□□□ 0.39
SCLT1-202ENST00000439369 KIF1AQ12756 1690 aa17.5■□□□□ 0.39
SCLT1-202ENST00000439369 TMC1Q8TDI8 760 aa17.49■□□□□ 0.39
SCLT1-202ENST00000439369 CABP1Q9NZU7 370 aa17.49■□□□□ 0.39
SCLT1-202ENST00000439369 POLR3AO14802 1390 aaPredicted RBP17.49■□□□□ 0.39
SCLT1-202ENST00000439369 CPSF1Q10570 1443 aaKnown RBP17.48■□□□□ 0.39
SCLT1-202ENST00000439369 HDGFL2Q7Z4V5 671 aaPredicted RBP17.48■□□□□ 0.39
SCLT1-202ENST00000439369 ZNF692Q9BU19 519 aaPredicted RBP17.48■□□□□ 0.39
SCLT1-202ENST00000439369 SLC12A5Q9H2X9 1139 aa17.48■□□□□ 0.39
SCLT1-202ENST00000439369 BRD4O60885 1362 aaPredicted RBP17.48■□□□□ 0.39
SCLT1-202ENST00000439369 CERKQ8TCT0 537 aa17.47■□□□□ 0.39
SCLT1-202ENST00000439369 SLAIN2Q9P270 581 aa17.47■□□□□ 0.39
SCLT1-202ENST00000439369 PHF8Q9UPP1 1060 aa17.47■□□□□ 0.39
SCLT1-202ENST00000439369 CD163L1Q9NR16 1453 aa17.47■□□□□ 0.39
SCLT1-202ENST00000439369 NUTM2FA1L443 756 aa17.46■□□□□ 0.39
SCLT1-202ENST00000439369 DDX10Q13206 875 aaKnown RBP17.46■□□□□ 0.39
SCLT1-202ENST00000439369 RGPD8O14715 1765 aaPredicted RBP17.45■□□□□ 0.38
SCLT1-202ENST00000439369 A0A1W2PP64 1363 aa17.45■□□□□ 0.38
SCLT1-202ENST00000439369 ESCO1Q5FWF5 840 aa17.45■□□□□ 0.38
SCLT1-202ENST00000439369 PANK3Q9H999 370 aa17.45■□□□□ 0.38
SCLT1-202ENST00000439369 AKAP12Q02952 1782 aa17.45■□□□□ 0.38
SCLT1-202ENST00000439369 ACEP12821 1306 aa17.44■□□□□ 0.38
SCLT1-202ENST00000439369 TOM1O60784 492 aa17.43■□□□□ 0.38
SCLT1-202ENST00000439369 EDC4Q6P2E9 1401 aaKnown RBP17.43■□□□□ 0.38
SCLT1-202ENST00000439369 MON2Q7Z3U7 1717 aa17.43■□□□□ 0.38
SCLT1-202ENST00000439369 KTN1Q86UP2 1357 aaKnown RBP17.42■□□□□ 0.38
SCLT1-202ENST00000439369 USP6P35125 1406 aa17.42■□□□□ 0.38
SCLT1-202ENST00000439369 NGDNQ8NEJ9 315 aaKnown RBP17.42■□□□□ 0.38
SCLT1-202ENST00000439369 ORAI2Q96SN7 254 aa17.42■□□□□ 0.38
SCLT1-202ENST00000439369 NPC1L1Q9UHC9 1359 aa17.41■□□□□ 0.38
SCLT1-202ENST00000439369 PER1O15534 1290 aaPredicted RBP17.41■□□□□ 0.38
SCLT1-202ENST00000439369 BRINP3Q76B58 766 aa17.4■□□□□ 0.38
SCLT1-202ENST00000439369 PMFBP1Q8TBY8 1022 aa17.4■□□□□ 0.38
SCLT1-202ENST00000439369 KNSTRNQ9Y448 316 aa17.4■□□□□ 0.38
SCLT1-202ENST00000439369 NPHP3Q7Z494 1330 aa17.4■□□□□ 0.38
SCLT1-202ENST00000439369 SSH2Q76I76 1423 aa17.39■□□□□ 0.38
SCLT1-202ENST00000439369 NSD3Q9BZ95 1437 aa17.39■□□□□ 0.38
SCLT1-202ENST00000439369 CARD14Q9BXL6 1004 aa17.39■□□□□ 0.37
SCLT1-202ENST00000439369 NRKQ7Z2Y5 1582 aa17.39■□□□□ 0.37
SCLT1-202ENST00000439369 NSD2O96028 1365 aa17.39■□□□□ 0.37
SCLT1-202ENST00000439369 CGNL1Q0VF96 1302 aa17.38■□□□□ 0.37
SCLT1-202ENST00000439369 TTC21AQ8NDW8 1320 aa17.38■□□□□ 0.37
SCLT1-202ENST00000439369 NHSL1Q5SYE7 1610 aa17.36■□□□□ 0.37
SCLT1-202ENST00000439369 UBAP1LF5GYI3 381 aa17.36■□□□□ 0.37
SCLT1-202ENST00000439369 PSME1Q06323 249 aa17.36■□□□□ 0.37
SCLT1-202ENST00000439369 ROBO1Q9Y6N7 1651 aa17.36■□□□□ 0.37
SCLT1-202ENST00000439369 FOXO3O43524 673 aa17.35■□□□□ 0.37
SCLT1-202ENST00000439369 TTC21BQ7Z4L5 1316 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms