RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 AXDND1Q5T1B0 1012 aaPredicted RBP8.6□□□□□ -1.03
VPS53-204ENST00000437048 UBE2Q2Q8WVN8 375 aa8.6□□□□□ -1.03
VPS53-204ENST00000437048 SLC26A8Q96RN1 970 aa8.6□□□□□ -1.03
VPS53-204ENST00000437048 DNAJC2Q99543 621 aaKnown RBP8.6□□□□□ -1.03
VPS53-204ENST00000437048 PDE3AQ14432 1141 aa8.6□□□□□ -1.03
VPS53-204ENST00000437048 ZNHIT6Q9NWK9 470 aaKnown RBP8.6□□□□□ -1.03
VPS53-204ENST00000437048 JAKMIP3Q5VZ66 844 aa8.6□□□□□ -1.03
VPS53-204ENST00000437048 GORABQ5T7V8 394 aa8.59□□□□□ -1.03
VPS53-204ENST00000437048 CGNQ9P2M7 1197 aaKnown RBP8.59□□□□□ -1.03
VPS53-204ENST00000437048 ZNF396Q96N95 335 aaPredicted RBP8.59□□□□□ -1.03
VPS53-204ENST00000437048 TRIM6-TRIM34B2RNG4 842 aa8.59□□□□□ -1.04
VPS53-204ENST00000437048 HSPA5P11021 654 aaKnown RBP8.59□□□□□ -1.04
VPS53-204ENST00000437048 GIMAP7Q8NHV1 300 aa8.59□□□□□ -1.04
VPS53-204ENST00000437048 ESPNB1AK53 854 aa8.58□□□□□ -1.04
VPS53-204ENST00000437048 ZSCAN12O43309 604 aa8.58□□□□□ -1.04
VPS53-204ENST00000437048 CARMIL1Q5VZK9 1371 aa8.58□□□□□ -1.04
VPS53-204ENST00000437048 FOXD4L5Q5VV16 416 aaPredicted RBP8.58□□□□□ -1.04
VPS53-204ENST00000437048 FOXD4L4Q8WXT5 416 aaPredicted RBP8.58□□□□□ -1.04
VPS53-204ENST00000437048 DNAAF4Q8WXU2 420 aa8.58□□□□□ -1.04
VPS53-204ENST00000437048 KIF21BO75037 1637 aa8.58□□□□□ -1.04
VPS53-204ENST00000437048 DCAF11Q8TEB1 546 aa8.58□□□□□ -1.04
VPS53-204ENST00000437048 TRDNQ13061 729 aa8.58□□□□□ -1.04
VPS53-204ENST00000437048 WDR33Q9C0J8 1336 aaKnown RBP8.58□□□□□ -1.04
VPS53-204ENST00000437048 FILIP1Q7Z7B0 1213 aa8.58□□□□□ -1.04
VPS53-204ENST00000437048 PRKRIP1Q9H875 184 aaPredicted RBP8.58□□□□□ -1.04
VPS53-204ENST00000437048 NFKBIBQ15653 356 aa8.58□□□□□ -1.04
VPS53-204ENST00000437048 KIAA1328Q86T90 577 aa8.58□□□□□ -1.04
VPS53-204ENST00000437048 SHTN1A0MZ66 631 aa8.58□□□□□ -1.04
VPS53-204ENST00000437048 TSPY26PQ9H489 355 aa8.58□□□□□ -1.04
VPS53-204ENST00000437048 ERICH3Q5RHP9 1530 aa8.58□□□□□ -1.04
VPS53-204ENST00000437048 RBM28Q9NW13 759 aaKnown RBP8.57□□□□□ -1.04
VPS53-204ENST00000437048 CHMP3Q9Y3E7 222 aa8.57□□□□□ -1.04
VPS53-204ENST00000437048 V9GYY5 206 aaPredicted RBP8.57□□□□□ -1.04
VPS53-204ENST00000437048 CCAR2Q8N163 923 aaKnown RBP8.57□□□□□ -1.04
VPS53-204ENST00000437048 KLHL34Q8N239 644 aa8.57□□□□□ -1.04
VPS53-204ENST00000437048 SMC3Q9UQE7 1217 aa8.57□□□□□ -1.04
VPS53-204ENST00000437048 RRBP1Q9P2E9 1410 aaKnown RBP8.57□□□□□ -1.04
VPS53-204ENST00000437048 TERF1P54274 439 aa8.57□□□□□ -1.04
VPS53-204ENST00000437048 STIM1Q13586 685 aa8.57□□□□□ -1.04
VPS53-204ENST00000437048 CPLX1O14810 134 aa8.57□□□□□ -1.04
VPS53-204ENST00000437048 CDC45O75419 566 aa8.57□□□□□ -1.04
VPS53-204ENST00000437048 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.57□□□□□ -1.04
VPS53-204ENST00000437048 TRAK2O60296 914 aa8.56□□□□□ -1.04
VPS53-204ENST00000437048 U2AF1L5P0DN76 240 aaPredicted RBP8.56□□□□□ -1.04
VPS53-204ENST00000437048 U2AF1Q01081 240 aaKnown RBP eCLIP8.56□□□□□ -1.04
VPS53-204ENST00000437048 C22orf23Q9BZE7 217 aa8.56□□□□□ -1.04
VPS53-204ENST00000437048 USH1CQ9Y6N9 552 aa8.56□□□□□ -1.04
VPS53-204ENST00000437048 SRCIN1Q9C0H9 1055 aa8.56□□□□□ -1.04
VPS53-204ENST00000437048 CFAP45Q9UL16 551 aa8.56□□□□□ -1.04
VPS53-204ENST00000437048 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.56□□□□□ -1.04
VPS53-204ENST00000437048 IMMTQ16891 758 aaKnown RBP8.55□□□□□ -1.04
VPS53-204ENST00000437048 GCC1Q96CN9 775 aa8.55□□□□□ -1.04
VPS53-204ENST00000437048 GTPBP4Q9BZE4 634 aaKnown RBP8.55□□□□□ -1.04
VPS53-204ENST00000437048 KIF20AO95235 890 aa8.55□□□□□ -1.04
VPS53-204ENST00000437048 BICD2Q8TD16 824 aa8.55□□□□□ -1.04
VPS53-204ENST00000437048 PAXBP1Q9Y5B6 917 aa8.55□□□□□ -1.04
VPS53-204ENST00000437048 SMTNL1A8MU46 457 aa8.55□□□□□ -1.04
VPS53-204ENST00000437048 FYB1O15117 783 aa8.54□□□□□ -1.04
VPS53-204ENST00000437048 GSDMDP57764 484 aa8.54□□□□□ -1.04
VPS53-204ENST00000437048 DDX58O95786 925 aaKnown RBP8.54□□□□□ -1.04
VPS53-204ENST00000437048 EHBP1Q8NDI1 1231 aa8.54□□□□□ -1.04
VPS53-204ENST00000437048 ODF2Q5BJF6 829 aa8.54□□□□□ -1.04
VPS53-204ENST00000437048 SRRTQ9BXP5 876 aaKnown RBP8.54□□□□□ -1.04
VPS53-204ENST00000437048 CLSTN1O94985 981 aa8.54□□□□□ -1.04
VPS53-204ENST00000437048 PPM1EQ8WY54 764 aa8.54□□□□□ -1.04
VPS53-204ENST00000437048 HOOK3Q86VS8 718 aa8.54□□□□□ -1.04
VPS53-204ENST00000437048 PYM1Q9BRP8 204 aaKnown RBP8.54□□□□□ -1.04
VPS53-204ENST00000437048 CCDC91Q7Z6B0 441 aa8.54□□□□□ -1.04
VPS53-204ENST00000437048 ERC1Q8IUD2 1116 aa8.54□□□□□ -1.04
VPS53-204ENST00000437048 KIF18AQ8NI77 898 aa8.54□□□□□ -1.04
VPS53-204ENST00000437048 CLUAP1Q96AJ1 413 aa8.54□□□□□ -1.04
VPS53-204ENST00000437048 NUP155O75694 1391 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 APBB1O00213 710 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 CC2D1BQ5T0F9 858 aaKnown RBP8.53□□□□□ -1.04
VPS53-204ENST00000437048 TMCO3Q6UWJ1 677 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 CTAGE5O15320 804 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 SMG6Q86US8 1419 aaKnown RBP8.53□□□□□ -1.04
VPS53-204ENST00000437048 GIGYF2Q6Y7W6 1299 aaKnown RBP8.53□□□□□ -1.04
VPS53-204ENST00000437048 DZIP1LQ8IYY4 767 aaKnown RBP8.53□□□□□ -1.04
VPS53-204ENST00000437048 TIGD1Q96MW7 591 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 MPHOSPH9Q99550 1183 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 EFCAB5A4FU69 1503 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 USP47Q96K76 1375 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 DNAI2Q9GZS0 605 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 RGL3Q3MIN7 710 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 OFD1O75665 1012 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 TRIM5Q9C035 493 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS53-204ENST00000437048 MYOM3Q5VTT5 1437 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 RAPGEF2Q9Y4G8 1499 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 DESP17661 470 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 CDKL5O76039 1030 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 CEP57L1Q8IYX8 460 aa8.53□□□□□ -1.04
VPS53-204ENST00000437048 CT47A1Q5JQC4 288 aaPredicted RBP8.52□□□□□ -1.04
VPS53-204ENST00000437048 CRACR2AQ9BSW2 395 aa8.52□□□□□ -1.04
VPS53-204ENST00000437048 SRPK2P78362 688 aaKnown RBP8.52□□□□□ -1.04
VPS53-204ENST00000437048 SART3Q15020 963 aaKnown RBP8.52□□□□□ -1.05
VPS53-204ENST00000437048 SDF4Q9BRK5 362 aa8.52□□□□□ -1.05
VPS53-204ENST00000437048 LRRCC1Q9C099 1032 aa8.52□□□□□ -1.05
VPS53-204ENST00000437048 DAPK1P53355 1430 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms