RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.64□□□□□ -0.075e-6■■■■■ 52.9
CCDC88A-207ENST00000436346 ITSN2Q9NZM3 1697 aa14.64□□□□□ -0.07
CCDC88A-207ENST00000436346 IKQ13123 557 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-207ENST00000436346 CCDC47Q96A33 483 aaKnown RBP14.64□□□□□ -0.07
CCDC88A-207ENST00000436346 SYNJ1O43426 1573 aa14.64□□□□□ -0.07
CCDC88A-207ENST00000436346 CCAR1Q8IX12 1150 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-207ENST00000436346 PATL2C9JE40 543 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-207ENST00000436346 CT47A1Q5JQC4 288 aaPredicted RBP14.63□□□□□ -0.07
CCDC88A-207ENST00000436346 AQRO60306 1485 aaKnown RBP eCLIP14.63□□□□□ -0.07
CCDC88A-207ENST00000436346 FGD6Q6ZV73 1430 aa14.63□□□□□ -0.07
CCDC88A-207ENST00000436346 ZBED9Q6R2W3 1325 aa14.63□□□□□ -0.07
CCDC88A-207ENST00000436346 AK9Q5TCS8 1911 aa14.62□□□□□ -0.07
CCDC88A-207ENST00000436346 ERC2O15083 957 aa14.62□□□□□ -0.07
CCDC88A-207ENST00000436346 NEUROD6Q96NK8 337 aa14.62□□□□□ -0.07
CCDC88A-207ENST00000436346 COG6Q9Y2V7 657 aa14.62□□□□□ -0.07
CCDC88A-207ENST00000436346 RRP1P56182 461 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-207ENST00000436346 ABTB2Q8N961 1025 aa14.62□□□□□ -0.07
CCDC88A-207ENST00000436346 ZNF592Q92610 1267 aa14.62□□□□□ -0.07
CCDC88A-207ENST00000436346 MTMR7Q9Y216 660 aa14.62□□□□□ -0.07
CCDC88A-207ENST00000436346 BRMS1Q9HCU9 246 aa14.62□□□□□ -0.07
CCDC88A-207ENST00000436346 NAP1L1P55209 391 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-207ENST00000436346 FAM161AQ3B820 660 aa14.62□□□□□ -0.07
CCDC88A-207ENST00000436346 FAM135AQ9P2D6 1515 aa14.62□□□□□ -0.07
CCDC88A-207ENST00000436346 SETQ01105 290 aaPredicted RBP14.62□□□□□ -0.07
CCDC88A-207ENST00000436346 BICD2Q8TD16 824 aa14.62□□□□□ -0.07
CCDC88A-207ENST00000436346 ODF2Q5BJF6 829 aa14.61□□□□□ -0.07
CCDC88A-207ENST00000436346 RALYLQ86SE5 291 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-207ENST00000436346 SAFBQ15424 915 aaKnown RBP eCLIP14.61□□□□□ -0.07
CCDC88A-207ENST00000436346 CRBNQ96SW2 442 aa14.61□□□□□ -0.07
CCDC88A-207ENST00000436346 STRN4Q9NRL3 753 aa14.61□□□□□ -0.07
CCDC88A-207ENST00000436346 DDX49Q9Y6V7 483 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-207ENST00000436346 TOP2BQ02880 1626 aa14.6□□□□□ -0.07
CCDC88A-207ENST00000436346 TMEM132AQ24JP5 1023 aa14.6□□□□□ -0.07
CCDC88A-207ENST00000436346 CABP2Q9NPB3 220 aa14.6□□□□□ -0.07
CCDC88A-207ENST00000436346 VPS37CA5D8V6 355 aaPredicted RBP14.6□□□□□ -0.07
CCDC88A-207ENST00000436346 DZIP1LQ8IYY4 767 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-207ENST00000436346 EFCAB5A4FU69 1503 aa14.59□□□□□ -0.07
CCDC88A-207ENST00000436346 WASHC4Q2M389 1173 aa14.59□□□□□ -0.07
CCDC88A-207ENST00000436346 CNTLNQ9NXG0 1405 aa14.59□□□□□ -0.07
CCDC88A-207ENST00000436346 ESCO1Q5FWF5 840 aa14.59□□□□□ -0.07
CCDC88A-207ENST00000436346 R3HCC1Q9Y3T6 440 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-207ENST00000436346 NCOA2Q15596 1464 aa14.58□□□□□ -0.07
CCDC88A-207ENST00000436346 LRRC9Q6ZRR7 1453 aa14.58□□□□□ -0.07
CCDC88A-207ENST00000436346 RUNDC1Q96C34 613 aa14.58□□□□□ -0.08
CCDC88A-207ENST00000436346 GRIN2BQ13224 1484 aa14.58□□□□□ -0.08
CCDC88A-207ENST00000436346 PTPN23Q9H3S7 1636 aa14.57□□□□□ -0.08
CCDC88A-207ENST00000436346 APAF1O14727 1248 aa14.57□□□□□ -0.08
CCDC88A-207ENST00000436346 SF3B2Q13435 895 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-207ENST00000436346 MRC2Q9UBG0 1479 aa14.57□□□□□ -0.08
CCDC88A-207ENST00000436346 SKOR2Q2VWA4 1001 aaPredicted RBP14.57□□□□□ -0.08
CCDC88A-207ENST00000436346 UBTFL1P0CB47 393 aaPredicted RBP14.56□□□□□ -0.08
CCDC88A-207ENST00000436346 FAM177BA6PVY3 158 aa14.56□□□□□ -0.08
CCDC88A-207ENST00000436346 IQGAP2Q13576 1575 aa14.56□□□□□ -0.08
CCDC88A-207ENST00000436346 INTS3Q68E01 1043 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-207ENST00000436346 SLC3A2P08195 630 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-207ENST00000436346 HOMER1Q86YM7 354 aa14.55□□□□□ -0.08
CCDC88A-207ENST00000436346 EPRSP07814 1512 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-207ENST00000436346 API5Q9BZZ5 524 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-207ENST00000436346 KDM4AO75164 1064 aa14.55□□□□□ -0.08
CCDC88A-207ENST00000436346 GPS2Q13227 327 aa14.55□□□□□ -0.08
CCDC88A-207ENST00000436346 GNAI1P63096 354 aa14.54□□□□□ -0.08
CCDC88A-207ENST00000436346 SART3Q15020 963 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-207ENST00000436346 C9orf84Q5VXU9 1444 aa14.54□□□□□ -0.08
CCDC88A-207ENST00000436346 XBP1P17861 261 aa14.54□□□□□ -0.08
CCDC88A-207ENST00000436346 NLRP6P59044 892 aa14.54□□□□□ -0.08
CCDC88A-207ENST00000436346 SMC3Q9UQE7 1217 aa14.53□□□□□ -0.08
CCDC88A-207ENST00000436346 ANKRD50Q9ULJ7 1429 aa14.53□□□□□ -0.08
CCDC88A-207ENST00000436346 ZFYVE27Q5T4F4 411 aa14.53□□□□□ -0.08
CCDC88A-207ENST00000436346 HSP90AB4PQ58FF6 505 aa14.53□□□□□ -0.08
CCDC88A-207ENST00000436346 TBC1D2BQ9UPU7 963 aa14.53□□□□□ -0.08
CCDC88A-207ENST00000436346 SLC4A3P48751 1232 aa14.53□□□□□ -0.08
CCDC88A-207ENST00000436346 ATP2B2Q01814 1243 aa14.53□□□□□ -0.08
CCDC88A-207ENST00000436346 CNTROBQ8N137 903 aa14.52□□□□□ -0.08
CCDC88A-207ENST00000436346 DNMBPQ6XZF7 1577 aa14.52□□□□□ -0.08
CCDC88A-207ENST00000436346 WWC2Q6AWC2 1192 aa14.52□□□□□ -0.09
CCDC88A-207ENST00000436346 NUTM2BA6NNL0 878 aaPredicted RBP14.52□□□□□ -0.09
CCDC88A-207ENST00000436346 NUTM2EB1AL46 878 aaPredicted RBP14.52□□□□□ -0.09
CCDC88A-207ENST00000436346 NUTM2AQ8IVF1 878 aaPredicted RBP14.52□□□□□ -0.09
CCDC88A-207ENST00000436346 PRG4Q92954 1404 aaPredicted RBP14.52□□□□□ -0.09
CCDC88A-207ENST00000436346 RBM42Q9BTD8 480 aaKnown RBP14.52□□□□□ -0.09
CCDC88A-207ENST00000436346 PIP4K2BP78356 416 aa14.51□□□□□ -0.09
CCDC88A-207ENST00000436346 EXOC6Q8TAG9 804 aa14.51□□□□□ -0.09
CCDC88A-207ENST00000436346 CFTRP13569 1480 aa14.51□□□□□ -0.09
CCDC88A-207ENST00000436346 NAT10Q9H0A0 1025 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-207ENST00000436346 TMEM132EQ6IEE7 984 aa14.51□□□□□ -0.09
CCDC88A-207ENST00000436346 CDK5RAP3Q96JB5 506 aa14.51□□□□□ -0.09
CCDC88A-207ENST00000436346 CASKIN1Q8WXD9 1431 aa14.51□□□□□ -0.09
CCDC88A-207ENST00000436346 HSP90AB2PQ58FF8 381 aa14.51□□□□□ -0.09
CCDC88A-207ENST00000436346 RRP12Q5JTH9 1297 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-207ENST00000436346 SASS6Q6UVJ0 657 aa14.51□□□□□ -0.09
CCDC88A-207ENST00000436346 CCDC73Q6ZRK6 1079 aa14.51□□□□□ -0.09
CCDC88A-207ENST00000436346 FSD1Q9BTV5 496 aa14.51□□□□□ -0.09
CCDC88A-207ENST00000436346 DNAJC2Q99543 621 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-207ENST00000436346 GNL3LQ9NVN8 582 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-207ENST00000436346 OLFM4Q6UX06 510 aa14.5□□□□□ -0.09
CCDC88A-207ENST00000436346 RUFY1Q96T51 708 aa14.5□□□□□ -0.09
CCDC88A-207ENST00000436346 ZNF644Q9H582 1327 aaPredicted RBP14.5□□□□□ -0.09
CCDC88A-207ENST00000436346 TIAM1Q13009 1591 aa14.5□□□□□ -0.09
CCDC88A-207ENST00000436346 PCF11O94913 1555 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-207ENST00000436346 PDE4AP27815 886 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms