RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 SMC3Q9UQE7 1217 aa13.47□□□□□ -0.25
SCN4A-201ENST00000435607 E9PSI1 815 aa13.47□□□□□ -0.25
SCN4A-201ENST00000435607 KIF15Q9NS87 1388 aa13.47□□□□□ -0.25
SCN4A-201ENST00000435607 TMEM87AQ8NBN3 555 aa13.46□□□□□ -0.25
SCN4A-201ENST00000435607 FOXD4L6Q3SYB3 417 aaPredicted RBP13.46□□□□□ -0.25
SCN4A-201ENST00000435607 NOM1Q5C9Z4 860 aaKnown RBP13.46□□□□□ -0.25
SCN4A-201ENST00000435607 FOXD4L3Q6VB84 417 aaPredicted RBP13.46□□□□□ -0.25
SCN4A-201ENST00000435607 ERCC4Q92889 916 aaPredicted RBP13.46□□□□□ -0.25
SCN4A-201ENST00000435607 MAP7D2Q96T17 732 aa13.46□□□□□ -0.25
SCN4A-201ENST00000435607 PLIN1O60240 522 aa13.46□□□□□ -0.25
SCN4A-201ENST00000435607 SEPT7Q16181 437 aaKnown RBP13.46□□□□□ -0.25
SCN4A-201ENST00000435607 LUC7LQ9NQ29 371 aaKnown RBP13.46□□□□□ -0.26
SCN4A-201ENST00000435607 GPRASP1Q5JY77 1395 aa13.45□□□□□ -0.26
SCN4A-201ENST00000435607 DIAPH1O60610 1272 aaKnown RBP13.45□□□□□ -0.26
SCN4A-201ENST00000435607 PIP4K2AP48426 406 aaPredicted RBP13.45□□□□□ -0.26
SCN4A-201ENST00000435607 DDX19BQ9UMR2 479 aa13.45□□□□□ -0.26
SCN4A-201ENST00000435607 MTMR7Q9Y216 660 aa13.45□□□□□ -0.26
SCN4A-201ENST00000435607 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.45□□□□□ -0.26
SCN4A-201ENST00000435607 PSMA5P28066 241 aa13.45□□□□□ -0.26
SCN4A-201ENST00000435607 NECTIN2Q92692 538 aa13.44□□□□□ -0.26
SCN4A-201ENST00000435607 SMARCE1Q969G3 411 aa13.44□□□□□ -0.26
SCN4A-201ENST00000435607 MINK1Q8N4C8 1332 aaPredicted RBP13.44□□□□□ -0.26
SCN4A-201ENST00000435607 TSPYL4Q9UJ04 414 aa13.44□□□□□ -0.26
SCN4A-201ENST00000435607 FILIP1LQ4L180 1135 aa13.44□□□□□ -0.26
SCN4A-201ENST00000435607 MIA2Q96PC5 1412 aa13.44□□□□□ -0.26
SCN4A-201ENST00000435607 MNS1Q8NEH6 495 aa13.44□□□□□ -0.26
SCN4A-201ENST00000435607 EZRP15311 586 aaKnown RBP13.44□□□□□ -0.26
SCN4A-201ENST00000435607 CENPQQ7L2Z9 268 aaPredicted RBP13.44□□□□□ -0.26
SCN4A-201ENST00000435607 TXLNBQ8N3L3 684 aa13.44□□□□□ -0.26
SCN4A-201ENST00000435607 ATP2B2Q01814 1243 aa13.43□□□□□ -0.26
SCN4A-201ENST00000435607 OSCARQ8IYS5 282 aa13.43□□□□□ -0.26
SCN4A-201ENST00000435607 RRP7AQ9Y3A4 280 aaKnown RBP13.43□□□□□ -0.26
SCN4A-201ENST00000435607 SMG6Q86US8 1419 aaKnown RBP13.43□□□□□ -0.26
SCN4A-201ENST00000435607 VPS37CA5D8V6 355 aaPredicted RBP13.42□□□□□ -0.26
SCN4A-201ENST00000435607 SPDYE4A6NLX3 237 aa13.42□□□□□ -0.26
SCN4A-201ENST00000435607 INTS3Q68E01 1043 aaKnown RBP13.42□□□□□ -0.26
SCN4A-201ENST00000435607 RBM5P52756 815 aaKnown RBP eCLIP13.42□□□□□ -0.26
SCN4A-201ENST00000435607 ERC1Q8IUD2 1116 aa13.42□□□□□ -0.26
SCN4A-201ENST00000435607 ZNF771Q7L3S4 317 aaPredicted RBP13.42□□□□□ -0.26
SCN4A-201ENST00000435607 AIMP1Q12904 312 aaKnown RBP13.41□□□□□ -0.26
SCN4A-201ENST00000435607 HIP1O00291 1037 aa13.4□□□□□ -0.26
SCN4A-201ENST00000435607 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.4□□□□□ -0.26
SCN4A-201ENST00000435607 STIM1Q13586 685 aa13.4□□□□□ -0.27
SCN4A-201ENST00000435607 MYBBP1AQ9BQG0 1328 aaKnown RBP13.39□□□□□ -0.27
SCN4A-201ENST00000435607 ZNHIT6Q9NWK9 470 aaKnown RBP13.39□□□□□ -0.27
SCN4A-201ENST00000435607 ANKRD62A6NC57 917 aa13.39□□□□□ -0.27
SCN4A-201ENST00000435607 GNAI1P63096 354 aa13.39□□□□□ -0.27
SCN4A-201ENST00000435607 TMOD2Q9NZR1 351 aa13.39□□□□□ -0.27
SCN4A-201ENST00000435607 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.39□□□□□ -0.27
SCN4A-201ENST00000435607 CNTROBQ8N137 903 aa13.39□□□□□ -0.27
SCN4A-201ENST00000435607 CNNM1Q9NRU3 951 aa13.39□□□□□ -0.27
SCN4A-201ENST00000435607 PDILTQ8N807 584 aa13.39□□□□□ -0.27
SCN4A-201ENST00000435607 MATR3P43243 847 aaKnown RBP eCLIP13.39□□□□□ -0.27
SCN4A-201ENST00000435607 SDF4Q9BRK5 362 aa13.39□□□□□ -0.27
SCN4A-201ENST00000435607 UBTFL1P0CB47 393 aaPredicted RBP13.38□□□□□ -0.27
SCN4A-201ENST00000435607 RBM42Q9BTD8 480 aaKnown RBP13.38□□□□□ -0.27
SCN4A-201ENST00000435607 RIPK4P57078 832 aa13.38□□□□□ -0.27
SCN4A-201ENST00000435607 NACAP1Q9BZK3 213 aa13.38□□□□□ -0.27
SCN4A-201ENST00000435607 SOGA3Q5TF21 947 aa13.37□□□□□ -0.27
SCN4A-201ENST00000435607 DHX57Q6P158 1386 aaKnown RBP13.37□□□□□ -0.27
SCN4A-201ENST00000435607 CCP110O43303 1012 aa13.37□□□□□ -0.27
SCN4A-201ENST00000435607 NUCB2P80303 420 aa13.37□□□□□ -0.27
SCN4A-201ENST00000435607 CCDC158Q5M9N0 1113 aa13.37□□□□□ -0.27
SCN4A-201ENST00000435607 IPO9Q96P70 1041 aaKnown RBP13.37□□□□□ -0.27
SCN4A-201ENST00000435607 PLEKHO1Q53GL0 409 aaPredicted RBP13.37□□□□□ -0.27
SCN4A-201ENST00000435607 JPH4Q96JJ6 628 aa13.37□□□□□ -0.27
SCN4A-201ENST00000435607 FOSBP53539 338 aa13.37□□□□□ -0.27
SCN4A-201ENST00000435607 KIF7Q2M1P5 1343 aa13.36□□□□□ -0.27
SCN4A-201ENST00000435607 SMARCA2P51531 1590 aa13.36□□□□□ -0.27
SCN4A-201ENST00000435607 FAM177BA6PVY3 158 aa13.36□□□□□ -0.27
SCN4A-201ENST00000435607 FAM69CQ0P6D2 419 aa13.36□□□□□ -0.27
SCN4A-201ENST00000435607 PANK3Q9H999 370 aa13.36□□□□□ -0.27
SCN4A-201ENST00000435607 GBP2P32456 591 aaPredicted RBP13.36□□□□□ -0.27
SCN4A-201ENST00000435607 FAM161AQ3B820 660 aa13.36□□□□□ -0.27
SCN4A-201ENST00000435607 POTEJP0CG39 1038 aa13.36□□□□□ -0.27
SCN4A-201ENST00000435607 CLASRPQ8N2M8 674 aaKnown RBP13.36□□□□□ -0.27
SCN4A-201ENST00000435607 GOLGA6L10A6NI86 522 aa13.35□□□□□ -0.27
SCN4A-201ENST00000435607 TTC39AQ5SRH9 613 aa13.35□□□□□ -0.27
SCN4A-201ENST00000435607 ZSCAN29Q8IWY8 852 aaPredicted RBP13.35□□□□□ -0.27
SCN4A-201ENST00000435607 H0YHG0 523 aa13.35□□□□□ -0.27
SCN4A-201ENST00000435607 BMP2KQ9NSY1 1161 aaPredicted RBP13.35□□□□□ -0.27
SCN4A-201ENST00000435607 PAXIP1Q6ZW49 1069 aaPredicted RBP13.35□□□□□ -0.27
SCN4A-201ENST00000435607 BCL2L13Q9BXK5 485 aa13.35□□□□□ -0.27
SCN4A-201ENST00000435607 JMYQ8N9B5 988 aa13.35□□□□□ -0.27
SCN4A-201ENST00000435607 STRN4Q9NRL3 753 aa13.35□□□□□ -0.27
SCN4A-201ENST00000435607 TATP17735 454 aaPredicted RBP13.35□□□□□ -0.27
SCN4A-201ENST00000435607 TNIP1Q15025 636 aa13.34□□□□□ -0.27
SCN4A-201ENST00000435607 PPP4R3AQ6IN85 833 aa13.34□□□□□ -0.27
SCN4A-201ENST00000435607 FSD1Q9BTV5 496 aa13.34□□□□□ -0.27
SCN4A-201ENST00000435607 IFT57Q9NWB7 429 aa13.34□□□□□ -0.27
SCN4A-201ENST00000435607 DHX8Q14562 1220 aaKnown RBP13.34□□□□□ -0.27
SCN4A-201ENST00000435607 RABEP1Q15276 862 aa13.34□□□□□ -0.27
SCN4A-201ENST00000435607 CECR2Q9BXF3 1484 aa13.34□□□□□ -0.27
SCN4A-201ENST00000435607 PDCP20941 246 aa13.34□□□□□ -0.27
SCN4A-201ENST00000435607 CCDC30Q5VVM6 783 aa13.34□□□□□ -0.27
SCN4A-201ENST00000435607 TRIM22Q8IYM9 498 aa13.34□□□□□ -0.27
SCN4A-201ENST00000435607 ZSCAN25Q6NSZ9 544 aa13.34□□□□□ -0.27
SCN4A-201ENST00000435607 HSP90AA2PQ14568 343 aaPredicted RBP13.33□□□□□ -0.27
SCN4A-201ENST00000435607 GAS2L2Q8NHY3 880 aa13.33□□□□□ -0.27
SCN4A-201ENST00000435607 PROSER2Q86WR7 435 aaPredicted RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms