RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 EIF4G2P78344 907 aaKnown RBP eCLIP15.9■□□□□ 0.14
LINC00539-203ENST00000434601 USP47Q96K76 1375 aa15.89■□□□□ 0.13
LINC00539-203ENST00000434601 SETD1AO15047 1707 aaKnown RBP15.89■□□□□ 0.13
LINC00539-203ENST00000434601 PIK3C2GO75747 1445 aa15.89■□□□□ 0.13
LINC00539-203ENST00000434601 LRP6O75581 1613 aa15.89■□□□□ 0.13
LINC00539-203ENST00000434601 ASXL1Q8IXJ9 1541 aa15.89■□□□□ 0.13
LINC00539-203ENST00000434601 METP08581 1390 aa15.88■□□□□ 0.13
LINC00539-203ENST00000434601 NHSL1Q5SYE7 1610 aa15.88■□□□□ 0.13
LINC00539-203ENST00000434601 HSPA5P11021 654 aaKnown RBP15.88■□□□□ 0.13
LINC00539-203ENST00000434601 LRRC59Q96AG4 307 aaKnown RBP15.88■□□□□ 0.13
LINC00539-203ENST00000434601 ADGRF5Q8IZF2 1346 aa15.88■□□□□ 0.13
LINC00539-203ENST00000434601 MST1RQ04912 1400 aa15.87■□□□□ 0.13
LINC00539-203ENST00000434601 VGFO15240 615 aaPredicted RBP15.87■□□□□ 0.13
LINC00539-203ENST00000434601 CARD11Q9BXL7 1154 aa15.87■□□□□ 0.13
LINC00539-203ENST00000434601 ADGRL3Q9HAR2 1447 aa15.86■□□□□ 0.13
LINC00539-203ENST00000434601 NALCNQ8IZF0 1738 aa15.85■□□□□ 0.13
LINC00539-203ENST00000434601 NUTM2BA6NNL0 878 aaPredicted RBP15.84■□□□□ 0.13
LINC00539-203ENST00000434601 NUTM2EB1AL46 878 aaPredicted RBP15.84■□□□□ 0.13
LINC00539-203ENST00000434601 NBPF1Q3BBV0 1214 aa15.84■□□□□ 0.13
LINC00539-203ENST00000434601 NUTM2AQ8IVF1 878 aaPredicted RBP15.84■□□□□ 0.13
LINC00539-203ENST00000434601 HIRIP3Q9BW71 556 aaPredicted RBP15.84■□□□□ 0.13
LINC00539-203ENST00000434601 RXRBP28702 533 aa15.83■□□□□ 0.12
LINC00539-203ENST00000434601 PTCH1Q13635 1447 aa15.82■□□□□ 0.12
LINC00539-203ENST00000434601 ADGRB1O14514 1584 aa15.81■□□□□ 0.12
LINC00539-203ENST00000434601 CDK12Q9NYV4 1490 aaPredicted RBP15.8■□□□□ 0.12
LINC00539-203ENST00000434601 AFF2P51816 1311 aa15.79■□□□□ 0.12
LINC00539-203ENST00000434601 CFAP70Q5T0N1 1121 aa15.79■□□□□ 0.12
LINC00539-203ENST00000434601 C1orf167Q5SNV9 1468 aa15.78■□□□□ 0.12
LINC00539-203ENST00000434601 DIEXFQ68CQ4 756 aaKnown RBP15.78■□□□□ 0.12
LINC00539-203ENST00000434601 EIF3AQ14152 1382 aaKnown RBP15.77■□□□□ 0.12
LINC00539-203ENST00000434601 PNPLA6Q8IY17 1366 aa15.77■□□□□ 0.12
LINC00539-203ENST00000434601 UPF1Q92900 1129 aaKnown RBP eCLIP15.77■□□□□ 0.12
LINC00539-203ENST00000434601 C14orf93Q9H972 538 aaKnown RBP15.77■□□□□ 0.12
LINC00539-203ENST00000434601 C8orf37Q96NL8 207 aa15.76■□□□□ 0.11
LINC00539-203ENST00000434601 ROBO2Q9HCK4 1378 aa15.75■□□□□ 0.11
LINC00539-203ENST00000434601 DDX17Q92841 729 aaKnown RBP15.75■□□□□ 0.11
LINC00539-203ENST00000434601 SOS2Q07890 1332 aaPredicted RBP15.74■□□□□ 0.11
LINC00539-203ENST00000434601 ST20-MTHFSA0A0A6YYL1 179 aa15.74■□□□□ 0.11
LINC00539-203ENST00000434601 RBM6P78332 1123 aaKnown RBP15.74■□□□□ 0.11
LINC00539-203ENST00000434601 ARHGEF28Q8N1W1 1705 aaKnown RBP15.74■□□□□ 0.11
LINC00539-203ENST00000434601 CCDC7Q96M83 1385 aa15.74■□□□□ 0.11
LINC00539-203ENST00000434601 WASHC2AQ641Q2 1341 aa15.73■□□□□ 0.11
LINC00539-203ENST00000434601 NGLY1Q96IV0 654 aa15.73■□□□□ 0.11
LINC00539-203ENST00000434601 QTRT2Q9H974 415 aaKnown RBP15.73■□□□□ 0.11
LINC00539-203ENST00000434601 ORAI2Q96SN7 254 aa15.72■□□□□ 0.11
LINC00539-203ENST00000434601 QRICH2Q9H0J4 1663 aa15.71■□□□□ 0.11
LINC00539-203ENST00000434601 KIF7Q2M1P5 1343 aa15.7■□□□□ 0.1
LINC00539-203ENST00000434601 CDC42BPGQ6DT37 1551 aa15.7■□□□□ 0.1
LINC00539-203ENST00000434601 NPHP3Q7Z494 1330 aa15.69■□□□□ 0.1
LINC00539-203ENST00000434601 COL22A1Q8NFW1 1626 aaPredicted RBP15.69■□□□□ 0.1
LINC00539-203ENST00000434601 C11orf95C9JLR9 678 aaPredicted RBP15.69■□□□□ 0.1
LINC00539-203ENST00000434601 ADAMTS2O95450 1211 aa15.69■□□□□ 0.1
LINC00539-203ENST00000434601 KNDC1Q76NI1 1749 aa15.68■□□□□ 0.1
LINC00539-203ENST00000434601 LRPPRCP42704 1394 aaKnown RBP15.68■□□□□ 0.1
LINC00539-203ENST00000434601 TMEM132EQ6IEE7 984 aa15.68■□□□□ 0.1
LINC00539-203ENST00000434601 TESK2Q96S53 571 aa15.68■□□□□ 0.1
LINC00539-203ENST00000434601 YTHDC2Q9H6S0 1430 aaKnown RBP15.68■□□□□ 0.1
LINC00539-203ENST00000434601 DDX10Q13206 875 aaKnown RBP15.67■□□□□ 0.1
LINC00539-203ENST00000434601 ESCO1Q5FWF5 840 aa15.67■□□□□ 0.1
LINC00539-203ENST00000434601 USP21Q9UK80 565 aa15.67■□□□□ 0.1
LINC00539-203ENST00000434601 TRPC5Q9UL62 973 aaPredicted RBP15.67■□□□□ 0.1
LINC00539-203ENST00000434601 DLC1Q96QB1 1528 aa15.67■□□□□ 0.1
LINC00539-203ENST00000434601 SBNO2Q9Y2G9 1366 aa15.66■□□□□ 0.1
LINC00539-203ENST00000434601 RGS12O14924 1447 aa15.66■□□□□ 0.1
LINC00539-203ENST00000434601 TECPR2O15040 1411 aa15.66■□□□□ 0.1
LINC00539-203ENST00000434601 MARF1Q9Y4F3 1742 aaKnown RBP15.65■□□□□ 0.1
LINC00539-203ENST00000434601 FNBP4Q8N3X1 1017 aaPredicted RBP15.65■□□□□ 0.1
LINC00539-203ENST00000434601 TRAK1Q9UPV9 953 aa15.65■□□□□ 0.1
LINC00539-203ENST00000434601 CENPJQ9HC77 1338 aaPredicted RBP15.65■□□□□ 0.1
LINC00539-203ENST00000434601 ABCC11Q96J66 1382 aa15.64■□□□□ 0.09
LINC00539-203ENST00000434601 TMF1P82094 1093 aa15.64■□□□□ 0.09
LINC00539-203ENST00000434601 STK26Q9P289 416 aa15.64■□□□□ 0.09
LINC00539-203ENST00000434601 ATAD2Q6PL18 1390 aa15.62■□□□□ 0.09
LINC00539-203ENST00000434601 FOXO3O43524 673 aa15.62■□□□□ 0.09
LINC00539-203ENST00000434601 PXDNQ92626 1479 aa15.62■□□□□ 0.09
LINC00539-203ENST00000434601 SLC24A1O60721 1099 aa15.61■□□□□ 0.09
LINC00539-203ENST00000434601 WAPLQ7Z5K2 1190 aa15.61■□□□□ 0.09
LINC00539-203ENST00000434601 SIRT1Q96EB6 747 aa15.61■□□□□ 0.09
LINC00539-203ENST00000434601 POLR3GLQ9BT43 218 aa15.61■□□□□ 0.09
LINC00539-203ENST00000434601 KIF1AQ12756 1690 aa15.6■□□□□ 0.09
LINC00539-203ENST00000434601 FMN2Q9NZ56 1722 aa15.6■□□□□ 0.09
LINC00539-203ENST00000434601 ATRNO75882 1429 aa15.6■□□□□ 0.09
LINC00539-203ENST00000434601 MYOM1P52179 1685 aa15.59■□□□□ 0.09
LINC00539-203ENST00000434601 TULP4Q9NRJ4 1543 aa15.58■□□□□ 0.09
LINC00539-203ENST00000434601 CDCA8Q53HL2 280 aa15.58■□□□□ 0.08
LINC00539-203ENST00000434601 EP400Q96L91 3159 aa15.57■□□□□ 0.08
LINC00539-203ENST00000434601 NUTM2FA1L443 756 aa15.57■□□□□ 0.08
LINC00539-203ENST00000434601 XPCQ01831 940 aaPredicted RBP15.57■□□□□ 0.08
LINC00539-203ENST00000434601 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.57■□□□□ 0.08
LINC00539-203ENST00000434601 RGPD8O14715 1765 aaPredicted RBP15.57■□□□□ 0.08
LINC00539-203ENST00000434601 CCDC125Q86Z20 511 aa15.56■□□□□ 0.08
LINC00539-203ENST00000434601 BCL9LQ86UU0 1499 aa15.55■□□□□ 0.08
LINC00539-203ENST00000434601 PLEKHH1Q9ULM0 1364 aa15.55■□□□□ 0.08
LINC00539-203ENST00000434601 SPATA31A3Q5VYP0 1347 aa15.55■□□□□ 0.08
LINC00539-203ENST00000434601 PSME1Q06323 249 aa15.55■□□□□ 0.08
LINC00539-203ENST00000434601 GJD4Q96KN9 370 aaPredicted RBP15.55■□□□□ 0.08
LINC00539-203ENST00000434601 PRAM1Q96QH2 718 aa15.55■□□□□ 0.08
LINC00539-203ENST00000434601 KRT28Q7Z3Y7 464 aa15.54■□□□□ 0.08
LINC00539-203ENST00000434601 MIER1Q8N108 512 aa15.54■□□□□ 0.08
LINC00539-203ENST00000434601 POGKQ9P215 609 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms