RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 PRDM9Q9NQV7 894 aa7.95□□□□□ -1.14
CLK1-204ENST00000432425 C6orf229H3BNL8 230 aa7.95□□□□□ -1.14
CLK1-204ENST00000432425 V9GY48 417 aaPredicted RBP7.95□□□□□ -1.14
CLK1-204ENST00000432425 RSBN1LQ6PCB5 846 aaPredicted RBP7.94□□□□□ -1.14
CLK1-204ENST00000432425 SYMPKQ92797 1274 aaKnown RBP7.94□□□□□ -1.14
CLK1-204ENST00000432425 PCDHGC3Q9UN70 934 aa7.94□□□□□ -1.14
CLK1-204ENST00000432425 GJA5P36382 358 aa7.93□□□□□ -1.14
CLK1-204ENST00000432425 RETREG3Q86VR2 466 aa7.93□□□□□ -1.14
CLK1-204ENST00000432425 FCF1Q9Y324 198 aaKnown RBP7.93□□□□□ -1.14
CLK1-204ENST00000432425 NEUROD2Q15784 382 aa7.92□□□□□ -1.14
CLK1-204ENST00000432425 RIC3Q7Z5B4 369 aa7.92□□□□□ -1.14
CLK1-204ENST00000432425 DDRGK1Q96HY6 314 aa7.92□□□□□ -1.14
CLK1-204ENST00000432425 SPTLC1O15269 473 aa7.92□□□□□ -1.14
CLK1-204ENST00000432425 MTMR2Q13614 643 aa7.92□□□□□ -1.14
CLK1-204ENST00000432425 MYSM1Q5VVJ2 828 aa7.92□□□□□ -1.14
CLK1-204ENST00000432425 RSPH6AQ9H0K4 717 aa7.92□□□□□ -1.14
CLK1-204ENST00000432425 SLC19A1P41440 591 aa7.91□□□□□ -1.14
CLK1-204ENST00000432425 MMP16P51512 607 aa7.91□□□□□ -1.14
CLK1-204ENST00000432425 SPDYE5A6NIY4 337 aa7.9□□□□□ -1.14
CLK1-204ENST00000432425 DXOO77932 396 aaKnown RBP7.9□□□□□ -1.14
CLK1-204ENST00000432425 JUNDP17535 347 aa7.89□□□□□ -1.15
CLK1-204ENST00000432425 CSPP1Q1MSJ5 1256 aa7.89□□□□□ -1.15
CLK1-204ENST00000432425 IRX2Q9BZI1 471 aaPredicted RBP7.89□□□□□ -1.15
CLK1-204ENST00000432425 FAM117AQ9C073 453 aa7.89□□□□□ -1.15
CLK1-204ENST00000432425 ZBTB3Q9H5J0 574 aa7.89□□□□□ -1.15
CLK1-204ENST00000432425 CLK2P49760 499 aaKnown RBP7.89□□□□□ -1.15
CLK1-204ENST00000432425 PLA2G2CQ5R387 149 aa7.89□□□□□ -1.15
CLK1-204ENST00000432425 ZBTB24O43167 697 aaPredicted RBP7.88□□□□□ -1.15
CLK1-204ENST00000432425 PRPF38BQ5VTL8 546 aaKnown RBP7.88□□□□□ -1.15
CLK1-204ENST00000432425 LIAT1Q6ZQX7 453 aa7.88□□□□□ -1.15
CLK1-204ENST00000432425 CCDC24Q8N4L8 307 aa7.88□□□□□ -1.15
CLK1-204ENST00000432425 PRR7Q8TB68 274 aa7.88□□□□□ -1.15
CLK1-204ENST00000432425 LIMD1Q9UGP4 676 aa7.88□□□□□ -1.15
CLK1-204ENST00000432425 PCDHB15Q9Y5E8 787 aa7.88□□□□□ -1.15
CLK1-204ENST00000432425 EMID1Q96A84 441 aaPredicted RBP7.87□□□□□ -1.15
CLK1-204ENST00000432425 ATP1B4Q9UN42 357 aaPredicted RBP7.87□□□□□ -1.15
CLK1-204ENST00000432425 NUTM2BA6NNL0 878 aaPredicted RBP7.86□□□□□ -1.15
CLK1-204ENST00000432425 NUTM2EB1AL46 878 aaPredicted RBP7.86□□□□□ -1.15
CLK1-204ENST00000432425 HRCP23327 699 aa7.86□□□□□ -1.15
CLK1-204ENST00000432425 RPIAP49247 311 aa7.86□□□□□ -1.15
CLK1-204ENST00000432425 TUSC1Q2TAM9 212 aa7.86□□□□□ -1.15
CLK1-204ENST00000432425 NUTM2DQ5VT03 806 aaPredicted RBP7.86□□□□□ -1.15
CLK1-204ENST00000432425 SPRYD7Q5W111 196 aa7.86□□□□□ -1.15
CLK1-204ENST00000432425 NUTM2AQ8IVF1 878 aaPredicted RBP7.86□□□□□ -1.15
CLK1-204ENST00000432425 POLR3EQ9NVU0 708 aa7.86□□□□□ -1.15
CLK1-204ENST00000432425 BRPF1P55201 1214 aaPredicted RBP7.86□□□□□ -1.15
CLK1-204ENST00000432425 ZNF598Q86UK7 904 aaKnown RBP7.86□□□□□ -1.15
CLK1-204ENST00000432425 CABLES1Q8TDN4 633 aa7.86□□□□□ -1.15
CLK1-204ENST00000432425 PLEKHG3A1L390 1219 aa7.85□□□□□ -1.15
CLK1-204ENST00000432425 SH3D19Q5HYK7 790 aa7.85□□□□□ -1.15
CLK1-204ENST00000432425 ZNF697Q5TEC3 545 aa7.85□□□□□ -1.15
CLK1-204ENST00000432425 NUDT12Q9BQG2 462 aa7.85□□□□□ -1.15
CLK1-204ENST00000432425 CD2BP2O95400 341 aaKnown RBP7.84□□□□□ -1.15
CLK1-204ENST00000432425 PRKCSHP14314 528 aaPredicted RBP7.84□□□□□ -1.15
CLK1-204ENST00000432425 SKIV2LQ15477 1246 aaKnown RBP7.84□□□□□ -1.15
CLK1-204ENST00000432425 QPCTQ16769 361 aa7.83□□□□□ -1.16
CLK1-204ENST00000432425 PTPRNQ16849 979 aa7.83□□□□□ -1.16
CLK1-204ENST00000432425 DESI1Q6ICB0 168 aa7.83□□□□□ -1.16
CLK1-204ENST00000432425 GFRA3O60609 400 aa7.83□□□□□ -1.16
CLK1-204ENST00000432425 LILRB3O75022 631 aa7.83□□□□□ -1.16
CLK1-204ENST00000432425 LAPTM4AQ15012 233 aa7.83□□□□□ -1.16
CLK1-204ENST00000432425 TSC1Q92574 1164 aa7.83□□□□□ -1.16
CLK1-204ENST00000432425 CFAP99D6REC4 459 aa7.82□□□□□ -1.16
CLK1-204ENST00000432425 CCNYL3P0C7X3 344 aa7.82□□□□□ -1.16
CLK1-204ENST00000432425 PDZRN3Q9UPQ7 1066 aa7.82□□□□□ -1.16
CLK1-204ENST00000432425 IL27Q8NEV9 243 aa7.81□□□□□ -1.16
CLK1-204ENST00000432425 TRIM32Q13049 653 aa7.8□□□□□ -1.16
CLK1-204ENST00000432425 HELBQ8NG08 1087 aaPredicted RBP7.8□□□□□ -1.16
CLK1-204ENST00000432425 RTL5Q5HYW3 569 aaPredicted RBP7.79□□□□□ -1.16
CLK1-204ENST00000432425 NRG2O14511 850 aaPredicted RBP7.79□□□□□ -1.16
CLK1-204ENST00000432425 FOXC1Q12948 553 aa7.79□□□□□ -1.16
CLK1-204ENST00000432425 LYPD8Q6UX82 237 aa7.79□□□□□ -1.16
CLK1-204ENST00000432425 PROCA1Q8NCQ7 364 aaPredicted RBP7.79□□□□□ -1.16
CLK1-204ENST00000432425 CTHP32929 405 aa7.78□□□□□ -1.16
CLK1-204ENST00000432425 PCMTD1Q96MG8 357 aaPredicted RBP7.78□□□□□ -1.16
CLK1-204ENST00000432425 EVA1BQ9NVM1 165 aa7.78□□□□□ -1.16
CLK1-204ENST00000432425 TNFRSF10AO00220 468 aa7.77□□□□□ -1.17
CLK1-204ENST00000432425 PRR20EP86478 221 aa7.77□□□□□ -1.17
CLK1-204ENST00000432425 PRR20CP86479 221 aa7.77□□□□□ -1.17
CLK1-204ENST00000432425 PRR20DP86480 221 aa7.77□□□□□ -1.17
CLK1-204ENST00000432425 PRR20BP86481 221 aa7.77□□□□□ -1.17
CLK1-204ENST00000432425 PRR20AP86496 221 aa7.77□□□□□ -1.17
CLK1-204ENST00000432425 KCNH2Q12809 1159 aa7.77□□□□□ -1.17
CLK1-204ENST00000432425 PTCRAQ6ISU1 281 aaPredicted RBP7.76□□□□□ -1.17
CLK1-204ENST00000432425 Q6ZNB5 142 aa7.76□□□□□ -1.17
CLK1-204ENST00000432425 TRIM67Q6ZTA4 783 aa7.76□□□□□ -1.17
CLK1-204ENST00000432425 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.76□□□□□ -1.17
CLK1-204ENST00000432425 GOPCQ9HD26 462 aa7.76□□□□□ -1.17
CLK1-204ENST00000432425 LOC100996750A0A140TA64 210 aa7.76□□□□□ -1.17
CLK1-204ENST00000432425 GDF9O60383 454 aa7.76□□□□□ -1.17
CLK1-204ENST00000432425 KRTAP4-6Q9BYQ5 205 aa7.76□□□□□ -1.17
CLK1-204ENST00000432425 UNC93B1Q9H1C4 597 aa7.76□□□□□ -1.17
CLK1-204ENST00000432425 WNT7BP56706 349 aa7.75□□□□□ -1.17
CLK1-204ENST00000432425 PKD2L1Q9P0L9 805 aa7.75□□□□□ -1.17
CLK1-204ENST00000432425 PER1O15534 1290 aaPredicted RBP7.74□□□□□ -1.17
CLK1-204ENST00000432425 PPP2R2DQ66LE6 453 aa7.74□□□□□ -1.17
CLK1-204ENST00000432425 WNT7AO00755 349 aa7.73□□□□□ -1.17
CLK1-204ENST00000432425 F12P00748 615 aaPredicted RBP7.73□□□□□ -1.17
CLK1-204ENST00000432425 MAP10Q9P2G4 905 aa7.73□□□□□ -1.17
CLK1-204ENST00000432425 LINC01559Q495D7 138 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms