RNA–Protein interactions for RNA: ENST00000430454.5

HDAC9-211, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 545 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-211ENST00000430454 LAMC1P11047 1609 aa13.3□□□□□ -0.28
HDAC9-211ENST00000430454 NPHP3Q7Z494 1330 aa13.3□□□□□ -0.28
HDAC9-211ENST00000430454 NUTM2BA6NNL0 878 aaPredicted RBP13.29□□□□□ -0.28
HDAC9-211ENST00000430454 NUTM2EB1AL46 878 aaPredicted RBP13.29□□□□□ -0.28
HDAC9-211ENST00000430454 NUTM2AQ8IVF1 878 aaPredicted RBP13.29□□□□□ -0.28
HDAC9-211ENST00000430454 NRXN1Q9ULB1 1477 aa13.29□□□□□ -0.28
HDAC9-211ENST00000430454 CDC42BPGQ6DT37 1551 aa13.28□□□□□ -0.28
HDAC9-211ENST00000430454 NHSL1Q5SYE7 1610 aa13.28□□□□□ -0.28
HDAC9-211ENST00000430454 WAPLQ7Z5K2 1190 aa13.28□□□□□ -0.28
HDAC9-211ENST00000430454 POGKQ9P215 609 aa13.28□□□□□ -0.28
HDAC9-211ENST00000430454 CFAP70Q5T0N1 1121 aa13.27□□□□□ -0.29
HDAC9-211ENST00000430454 DCAF11Q8TEB1 546 aa13.27□□□□□ -0.29
HDAC9-211ENST00000430454 ORAI2Q96SN7 254 aa13.27□□□□□ -0.29
HDAC9-211ENST00000430454 SOS2Q07890 1332 aaPredicted RBP13.26□□□□□ -0.29
HDAC9-211ENST00000430454 POTEAQ6S8J7 498 aa13.26□□□□□ -0.29
HDAC9-211ENST00000430454 KNDC1Q76NI1 1749 aa13.26□□□□□ -0.29
HDAC9-211ENST00000430454 KDM2AQ9Y2K7 1162 aa13.26□□□□□ -0.29
HDAC9-211ENST00000430454 EIF3AQ14152 1382 aaKnown RBP13.24□□□□□ -0.29
HDAC9-211ENST00000430454 PNPLA6Q8IY17 1366 aa13.24□□□□□ -0.29
HDAC9-211ENST00000430454 DDX17Q92841 729 aaKnown RBP13.24□□□□□ -0.29
HDAC9-211ENST00000430454 PRAM1Q96QH2 718 aa13.24□□□□□ -0.29
HDAC9-211ENST00000430454 LRP6O75581 1613 aa13.24□□□□□ -0.29
HDAC9-211ENST00000430454 RXRBP28702 533 aa13.23□□□□□ -0.29
HDAC9-211ENST00000430454 PSME1Q06323 249 aa13.23□□□□□ -0.29
HDAC9-211ENST00000430454 FOXO3O43524 673 aa13.22□□□□□ -0.29
HDAC9-211ENST00000430454 NGLY1Q96IV0 654 aa13.22□□□□□ -0.29
HDAC9-211ENST00000430454 C8orf37Q96NL8 207 aa13.22□□□□□ -0.29
HDAC9-211ENST00000430454 DLC1Q96QB1 1528 aa13.22□□□□□ -0.29
HDAC9-211ENST00000430454 PLEKHH1Q9ULM0 1364 aa13.21□□□□□ -0.29
HDAC9-211ENST00000430454 AFF2P51816 1311 aa13.21□□□□□ -0.29
HDAC9-211ENST00000430454 NUTM2FA1L443 756 aa13.21□□□□□ -0.29
HDAC9-211ENST00000430454 ADAMTS2O95450 1211 aa13.2□□□□□ -0.3
HDAC9-211ENST00000430454 SAFB2Q14151 953 aaKnown RBP eCLIP13.2□□□□□ -0.3
HDAC9-211ENST00000430454 PHF8Q9UPP1 1060 aa13.2□□□□□ -0.3
HDAC9-211ENST00000430454 TRAK1Q9UPV9 953 aa13.2□□□□□ -0.3
HDAC9-211ENST00000430454 KIF1AQ12756 1690 aa13.18□□□□□ -0.3
HDAC9-211ENST00000430454 KRT28Q7Z3Y7 464 aa13.18□□□□□ -0.3
HDAC9-211ENST00000430454 ANKARQ7Z5J8 1434 aa13.18□□□□□ -0.3
HDAC9-211ENST00000430454 FMN2Q9NZ56 1722 aa13.18□□□□□ -0.3
HDAC9-211ENST00000430454 HAP1P54257 671 aaPredicted RBP13.17□□□□□ -0.3
HDAC9-211ENST00000430454 RBM6P78332 1123 aaKnown RBP13.17□□□□□ -0.3
HDAC9-211ENST00000430454 QTRT2Q9H974 415 aaKnown RBP13.17□□□□□ -0.3
HDAC9-211ENST00000430454 PXDNQ92626 1479 aa13.16□□□□□ -0.3
HDAC9-211ENST00000430454 XPCQ01831 940 aaPredicted RBP13.16□□□□□ -0.3
HDAC9-211ENST00000430454 USP21Q9UK80 565 aa13.16□□□□□ -0.3
HDAC9-211ENST00000430454 TRPC5Q9UL62 973 aaPredicted RBP13.16□□□□□ -0.3
HDAC9-211ENST00000430454 CDK12Q9NYV4 1490 aaPredicted RBP13.16□□□□□ -0.3
HDAC9-211ENST00000430454 ADGRB1O14514 1584 aa13.15□□□□□ -0.3
HDAC9-211ENST00000430454 COL22A1Q8NFW1 1626 aaPredicted RBP13.15□□□□□ -0.3
HDAC9-211ENST00000430454 GPRASP1Q5JY77 1395 aa13.15□□□□□ -0.3
HDAC9-211ENST00000430454 SPATA31A3Q5VYP0 1347 aa13.14□□□□□ -0.31
HDAC9-211ENST00000430454 WASLO00401 505 aaPredicted RBP13.14□□□□□ -0.31
HDAC9-211ENST00000430454 FNBP4Q8N3X1 1017 aaPredicted RBP13.14□□□□□ -0.31
HDAC9-211ENST00000430454 SBNO1A3KN83 1393 aa13.14□□□□□ -0.31
HDAC9-211ENST00000430454 ARHGEF10O15013 1369 aa13.14□□□□□ -0.31
HDAC9-211ENST00000430454 MINK1Q8N4C8 1332 aaPredicted RBP13.13□□□□□ -0.31
HDAC9-211ENST00000430454 ADGRB2O60241 1585 aa13.13□□□□□ -0.31
HDAC9-211ENST00000430454 LMOD2Q6P5Q4 547 aa13.13□□□□□ -0.31
HDAC9-211ENST00000430454 HIRIP3Q9BW71 556 aaPredicted RBP13.13□□□□□ -0.31
HDAC9-211ENST00000430454 NGDNQ8NEJ9 315 aaKnown RBP13.11□□□□□ -0.31
HDAC9-211ENST00000430454 TNS3Q68CZ2 1445 aa13.11□□□□□ -0.31
HDAC9-211ENST00000430454 KIAA1210Q9ULL0 1709 aa13.1□□□□□ -0.31
HDAC9-211ENST00000430454 PMFBP1Q8TBY8 1022 aa13.1□□□□□ -0.31
HDAC9-211ENST00000430454 TULP4Q9NRJ4 1543 aa13.09□□□□□ -0.31
HDAC9-211ENST00000430454 NUDT16Q96DE0 195 aaKnown RBP13.08□□□□□ -0.32
HDAC9-211ENST00000430454 NEUROD1Q13562 356 aa13.07□□□□□ -0.32
HDAC9-211ENST00000430454 UNC5CLQ8IV45 518 aa13.07□□□□□ -0.32
HDAC9-211ENST00000430454 CDK19Q9BWU1 502 aa13.07□□□□□ -0.32
HDAC9-211ENST00000430454 CCDC61Q9Y6R9 512 aa13.07□□□□□ -0.32
HDAC9-211ENST00000430454 PAK3O75914 559 aaPredicted RBP13.06□□□□□ -0.32
HDAC9-211ENST00000430454 L3MBTL2Q969R5 705 aa13.06□□□□□ -0.32
HDAC9-211ENST00000430454 CENPJQ9HC77 1338 aaPredicted RBP13.06□□□□□ -0.32
HDAC9-211ENST00000430454 ATAD2Q6PL18 1390 aa13.06□□□□□ -0.32
HDAC9-211ENST00000430454 ATRNO75882 1429 aa13.05□□□□□ -0.32
HDAC9-211ENST00000430454 RGPD8O14715 1765 aaPredicted RBP13.05□□□□□ -0.32
HDAC9-211ENST00000430454 UPF1Q92900 1129 aaKnown RBP eCLIP13.05□□□□□ -0.32
HDAC9-211ENST00000430454 GJD4Q96KN9 370 aaPredicted RBP13.05□□□□□ -0.32
HDAC9-211ENST00000430454 SRPK2P78362 688 aaKnown RBP13.04□□□□□ -0.32
HDAC9-211ENST00000430454 TRIM26Q12899 539 aaPredicted RBP13.04□□□□□ -0.32
HDAC9-211ENST00000430454 NBPF1Q3BBV0 1214 aa13.04□□□□□ -0.32
HDAC9-211ENST00000430454 PRR36Q9H6K5 1346 aa13.04□□□□□ -0.32
HDAC9-211ENST00000430454 ITSN1Q15811 1721 aa13.04□□□□□ -0.32
HDAC9-211ENST00000430454 ARHGEF28Q8N1W1 1705 aaKnown RBP13.04□□□□□ -0.32
HDAC9-211ENST00000430454 MARF1Q9Y4F3 1742 aaKnown RBP13.04□□□□□ -0.32
HDAC9-211ENST00000430454 RGS12O14924 1447 aa13.04□□□□□ -0.32
HDAC9-211ENST00000430454 USP32Q8NFA0 1604 aa13.03□□□□□ -0.32
HDAC9-211ENST00000430454 PLEKHG5O94827 1062 aa13.03□□□□□ -0.32
HDAC9-211ENST00000430454 SIN3AQ96ST3 1273 aa13.03□□□□□ -0.32
HDAC9-211ENST00000430454 BCL9LQ86UU0 1499 aa13.03□□□□□ -0.32
HDAC9-211ENST00000430454 CABLES1Q8TDN4 633 aa13.02□□□□□ -0.33
HDAC9-211ENST00000430454 CCDC9Q9Y3X0 531 aaKnown RBP13.02□□□□□ -0.33
HDAC9-211ENST00000430454 PLEKHG3A1L390 1219 aa13.01□□□□□ -0.33
HDAC9-211ENST00000430454 VPS72Q15906 364 aa13.01□□□□□ -0.33
HDAC9-211ENST00000430454 CCDC125Q86Z20 511 aa13.01□□□□□ -0.33
HDAC9-211ENST00000430454 EVC2Q86UK5 1308 aa13.01□□□□□ -0.33
HDAC9-211ENST00000430454 ROCK2O75116 1388 aaKnown RBP13.01□□□□□ -0.33
HDAC9-211ENST00000430454 ATP7BP35670 1465 aa13.01□□□□□ -0.33
HDAC9-211ENST00000430454 SLIT2O94813 1529 aa13.01□□□□□ -0.33
HDAC9-211ENST00000430454 BRD4O60885 1362 aaPredicted RBP13□□□□□ -0.33
HDAC9-211ENST00000430454 NBPF8Q3BBV2 869 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms