RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 R3HCC1Q9Y3T6 440 aaKnown RBP18.65■□□□□ 0.58
PTPRF-206ENST00000429895 INTS3Q68E01 1043 aaKnown RBP18.64■□□□□ 0.57
PTPRF-206ENST00000429895 CABP2Q9NPB3 220 aa18.64■□□□□ 0.57
PTPRF-206ENST00000429895 HSP90AA2PQ14568 343 aaPredicted RBP18.64■□□□□ 0.57
PTPRF-206ENST00000429895 RUNDC1Q96C34 613 aa18.64■□□□□ 0.57
PTPRF-206ENST00000429895 EPS15P42566 896 aa18.63■□□□□ 0.57
PTPRF-206ENST00000429895 ZNF771Q7L3S4 317 aaPredicted RBP18.62■□□□□ 0.57
PTPRF-206ENST00000429895 GNAI1P63096 354 aa18.62■□□□□ 0.57
PTPRF-206ENST00000429895 GSE1Q14687 1217 aa18.62■□□□□ 0.57
PTPRF-206ENST00000429895 TMEM132AQ24JP5 1023 aa18.62■□□□□ 0.57
PTPRF-206ENST00000429895 RBM42Q9BTD8 480 aaKnown RBP18.62■□□□□ 0.57
PTPRF-206ENST00000429895 HSP90AB4PQ58FF6 505 aa18.62■□□□□ 0.57
PTPRF-206ENST00000429895 CCDC73Q6ZRK6 1079 aa18.62■□□□□ 0.57
PTPRF-206ENST00000429895 UBTFL1P0CB47 393 aaPredicted RBP18.61■□□□□ 0.57
PTPRF-206ENST00000429895 ZNF428Q96B54 188 aa18.61■□□□□ 0.57
PTPRF-206ENST00000429895 BRMS1Q9HCU9 246 aa18.61■□□□□ 0.57
PTPRF-206ENST00000429895 DNAJC2Q99543 621 aaKnown RBP18.6■□□□□ 0.57
PTPRF-206ENST00000429895 NLRP6P59044 892 aa18.6■□□□□ 0.57
PTPRF-206ENST00000429895 OSCARQ8IYS5 282 aa18.6■□□□□ 0.57
PTPRF-206ENST00000429895 PDILTQ8N807 584 aa18.6■□□□□ 0.57
PTPRF-206ENST00000429895 STRN4Q9NRL3 753 aa18.59■□□□□ 0.57
PTPRF-206ENST00000429895 DCAF8L1A6NGE4 600 aa18.58■□□□□ 0.57
PTPRF-206ENST00000429895 FSD1Q9BTV5 496 aa18.58■□□□□ 0.57
PTPRF-206ENST00000429895 TMEM132EQ6IEE7 984 aa18.58■□□□□ 0.57
PTPRF-206ENST00000429895 HSP90AB2PQ58FF8 381 aa18.58■□□□□ 0.56
PTPRF-206ENST00000429895 ATP2B1P20020 1258 aa18.58■□□□□ 0.56
PTPRF-206ENST00000429895 PANK1Q8TE04 598 aa18.58■□□□□ 0.56
PTPRF-206ENST00000429895 RUFY1Q96T51 708 aa18.58■□□□□ 0.56
PTPRF-206ENST00000429895 TTLL5Q6EMB2 1281 aa18.58■□□□□ 0.56
PTPRF-206ENST00000429895 ZBED9Q6R2W3 1325 aa18.58■□□□□ 0.56
PTPRF-206ENST00000429895 CADPSQ9ULU8 1353 aa18.57■□□□□ 0.56
PTPRF-206ENST00000429895 OFD1O75665 1012 aa18.57■□□□□ 0.56
PTPRF-206ENST00000429895 IFT57Q9NWB7 429 aa18.57■□□□□ 0.56
PTPRF-206ENST00000429895 CCAR1Q8IX12 1150 aaKnown RBP18.57■□□□□ 0.56
PTPRF-206ENST00000429895 ESCO1Q5FWF5 840 aa18.56■□□□□ 0.56
PTPRF-206ENST00000429895 RRP12Q5JTH9 1297 aaKnown RBP18.56■□□□□ 0.56
PTPRF-206ENST00000429895 OLFM4Q6UX06 510 aa18.56■□□□□ 0.56
PTPRF-206ENST00000429895 DHX57Q6P158 1386 aaKnown RBP18.56■□□□□ 0.56
PTPRF-206ENST00000429895 STK11IPQ8N1F8 1099 aa18.56■□□□□ 0.56
PTPRF-206ENST00000429895 KIF6Q6ZMV9 814 aa18.56■□□□□ 0.56
PTPRF-206ENST00000429895 CHMP5Q9NZZ3 219 aa18.56■□□□□ 0.56
PTPRF-206ENST00000429895 XBP1P17861 261 aa18.55■□□□□ 0.56
PTPRF-206ENST00000429895 ABTB2Q8N961 1025 aa18.55■□□□□ 0.56
PTPRF-206ENST00000429895 TBC1D2BQ9UPU7 963 aa18.54■□□□□ 0.56
PTPRF-206ENST00000429895 NINLQ9Y2I6 1382 aa18.54■□□□□ 0.56
PTPRF-206ENST00000429895 ATP2B2Q01814 1243 aa18.53■□□□□ 0.56
PTPRF-206ENST00000429895 CNTROBQ8N137 903 aa18.53■□□□□ 0.56
PTPRF-206ENST00000429895 PAF1Q8N7H5 531 aa18.53■□□□□ 0.56
PTPRF-206ENST00000429895 MNS1Q8NEH6 495 aa18.53■□□□□ 0.56
PTPRF-206ENST00000429895 SKIDA1Q1XH10 827 aa18.52■□□□□ 0.56
PTPRF-206ENST00000429895 C22orf23Q9BZE7 217 aa18.52■□□□□ 0.56
PTPRF-206ENST00000429895 FAM13BQ9NYF5 915 aa18.52■□□□□ 0.56
PTPRF-206ENST00000429895 NUTM2BA6NNL0 878 aaPredicted RBP18.52■□□□□ 0.56
PTPRF-206ENST00000429895 NUTM2EB1AL46 878 aaPredicted RBP18.52■□□□□ 0.56
PTPRF-206ENST00000429895 NUTM2AQ8IVF1 878 aaPredicted RBP18.52■□□□□ 0.56
PTPRF-206ENST00000429895 AK7Q96M32 723 aa18.52■□□□□ 0.55
PTPRF-206ENST00000429895 CAGE1Q8TC20 777 aa18.52■□□□□ 0.55
PTPRF-206ENST00000429895 WIZO95785 1651 aa18.51■□□□□ 0.55
PTPRF-206ENST00000429895 TEX35Q5T0J7 233 aa18.51■□□□□ 0.55
PTPRF-206ENST00000429895 SURF6O75683 361 aaKnown RBP18.51■□□□□ 0.55
PTPRF-206ENST00000429895 SDF4Q9BRK5 362 aa18.51■□□□□ 0.55
PTPRF-206ENST00000429895 NUCB2P80303 420 aa18.51■□□□□ 0.55
PTPRF-206ENST00000429895 MIA2Q96PC5 1412 aa18.51■□□□□ 0.55
PTPRF-206ENST00000429895 SART3Q15020 963 aaKnown RBP18.51■□□□□ 0.55
PTPRF-206ENST00000429895 CDK5RAP3Q96JB5 506 aa18.5■□□□□ 0.55
PTPRF-206ENST00000429895 CDC45O75419 566 aa18.5■□□□□ 0.55
PTPRF-206ENST00000429895 CNNM1Q9NRU3 951 aa18.5■□□□□ 0.55
PTPRF-206ENST00000429895 PSMA5P28066 241 aa18.5■□□□□ 0.55
PTPRF-206ENST00000429895 TTC39AQ5SRH9 613 aa18.49■□□□□ 0.55
PTPRF-206ENST00000429895 WWC2Q6AWC2 1192 aa18.49■□□□□ 0.55
PTPRF-206ENST00000429895 GPRASP1Q5JY77 1395 aa18.49■□□□□ 0.55
PTPRF-206ENST00000429895 RSPH6AQ9H0K4 717 aa18.49■□□□□ 0.55
PTPRF-206ENST00000429895 CCDC30Q5VVM6 783 aa18.48■□□□□ 0.55
PTPRF-206ENST00000429895 C1orf115Q9H7X2 142 aa18.48■□□□□ 0.55
PTPRF-206ENST00000429895 KRT18P05783 430 aaKnown RBP18.47■□□□□ 0.55
PTPRF-206ENST00000429895 CDR1P51861 262 aa18.47■□□□□ 0.55
PTPRF-206ENST00000429895 BRPF1P55201 1214 aaPredicted RBP18.47■□□□□ 0.55
PTPRF-206ENST00000429895 CLASRPQ8N2M8 674 aaKnown RBP18.47■□□□□ 0.55
PTPRF-206ENST00000429895 ZNF644Q9H582 1327 aaPredicted RBP18.47■□□□□ 0.55
PTPRF-206ENST00000429895 NAT10Q9H0A0 1025 aaKnown RBP18.47■□□□□ 0.55
PTPRF-206ENST00000429895 PROSER2Q86WR7 435 aaPredicted RBP18.47■□□□□ 0.55
PTPRF-206ENST00000429895 CEBPZQ03701 1054 aaKnown RBP18.47■□□□□ 0.55
PTPRF-206ENST00000429895 RNF214Q8ND24 703 aa18.47■□□□□ 0.55
PTPRF-206ENST00000429895 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.47■□□□□ 0.55
PTPRF-206ENST00000429895 WASHC2AQ641Q2 1341 aa18.46■□□□□ 0.55
PTPRF-206ENST00000429895 SLC3A2P08195 630 aaKnown RBP18.46■□□□□ 0.55
PTPRF-206ENST00000429895 CCDC173Q0VFZ6 552 aa18.46■□□□□ 0.55
PTPRF-206ENST00000429895 PLEKHO1Q53GL0 409 aaPredicted RBP18.46■□□□□ 0.55
PTPRF-206ENST00000429895 MTHFSP49914 203 aa18.45■□□□□ 0.54
PTPRF-206ENST00000429895 DDX54Q8TDD1 881 aaKnown RBP18.45■□□□□ 0.54
PTPRF-206ENST00000429895 FMNL2Q96PY5 1086 aa18.45■□□□□ 0.54
PTPRF-206ENST00000429895 TOP2AP11388 1531 aaKnown RBP18.45■□□□□ 0.54
PTPRF-206ENST00000429895 SF3B2Q13435 895 aaKnown RBP18.45■□□□□ 0.54
PTPRF-206ENST00000429895 SMC2O95347 1197 aa18.45■□□□□ 0.54
PTPRF-206ENST00000429895 RBM5P52756 815 aaKnown RBP eCLIP18.44■□□□□ 0.54
PTPRF-206ENST00000429895 PRDM2Q13029 1718 aa18.44■□□□□ 0.54
PTPRF-206ENST00000429895 SIL1Q9H173 461 aa18.44■□□□□ 0.54
PTPRF-206ENST00000429895 VSIG10Q8N0Z9 540 aa18.43■□□□□ 0.54
PTPRF-206ENST00000429895 ARGLU1Q9NWB6 273 aaPredicted RBP18.43■□□□□ 0.54
PTPRF-206ENST00000429895 TXNDC2Q86VQ3 553 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms