RNA–Protein interactions for RNA: ENST00000428843.5

PTPN18-205, Transcript of protein tyrosine phosphatase, non-receptor type 18, human

TSL 3

Gene PTPN18, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN18-205	ENST00000428843	POGK	Q9P215	609 aa		31.81	■■■□□ 2.68
PTPN18-205	ENST00000428843	SAFB2	Q14151	953 aa	Known RBP eCLIP	31.79	■■■□□ 2.68
PTPN18-205	ENST00000428843	FBXO41	Q8TF61	875 aa		31.79	■■■□□ 2.68
PTPN18-205	ENST00000428843	DCC	P43146	1447 aa		31.78	■■■□□ 2.68
PTPN18-205	ENST00000428843	CARD11	Q9BXL7	1154 aa		31.77	■■■□□ 2.68
PTPN18-205	ENST00000428843	ATF3	P18847	181 aa		31.76	■■■□□ 2.67
PTPN18-205	ENST00000428843	CADPS2	Q86UW7	1296 aa		31.75	■■■□□ 2.67
PTPN18-205	ENST00000428843	CDC42BPG	Q6DT37	1551 aa		31.73	■■■□□ 2.67
PTPN18-205	ENST00000428843	PIP4K2B	P78356	416 aa		31.71	■■■□□ 2.67
PTPN18-205	ENST00000428843	SLAIN2	Q9P270	581 aa		31.69	■■■□□ 2.66
PTPN18-205	ENST00000428843	MINK1	Q8N4C8	1332 aa	Predicted RBP	31.69	■■■□□ 2.66
PTPN18-205	ENST00000428843	ADGRB2	O60241	1585 aa		31.68	■■■□□ 2.66
PTPN18-205	ENST00000428843	SCAF1	Q9H7N4	1312 aa	Known RBP	31.68	■■■□□ 2.66
PTPN18-205	ENST00000428843	CENPJ	Q9HC77	1338 aa	Predicted RBP	31.68	■■■□□ 2.66
PTPN18-205	ENST00000428843	MST1R	Q04912	1400 aa		31.67	■■■□□ 2.66
PTPN18-205	ENST00000428843	QRICH2	Q9H0J4	1663 aa		31.67	■■■□□ 2.66
PTPN18-205	ENST00000428843	EIF3A	Q14152	1382 aa	Known RBP	31.67	■■■□□ 2.66
PTPN18-205	ENST00000428843	HIRIP3	Q9BW71	556 aa	Predicted RBP	31.66	■■■□□ 2.66
PTPN18-205	ENST00000428843	FMN2	Q9NZ56	1722 aa		31.64	■■■□□ 2.66
PTPN18-205	ENST00000428843	ROBO1	Q9Y6N7	1651 aa		31.61	■■■□□ 2.65
PTPN18-205	ENST00000428843	C1orf167	Q5SNV9	1468 aa		31.6	■■■□□ 2.65
PTPN18-205	ENST00000428843	ILDR1	Q86SU0	546 aa	Predicted RBP	31.58	■■■□□ 2.65
PTPN18-205	ENST00000428843	NUTM2F	A1L443	756 aa		31.57	■■■□□ 2.64
PTPN18-205	ENST00000428843	WASL	O00401	505 aa	Predicted RBP	31.57	■■■□□ 2.64
PTPN18-205	ENST00000428843	USP47	Q96K76	1375 aa		31.55	■■■□□ 2.64
PTPN18-205	ENST00000428843	RGPD8	O14715	1765 aa	Predicted RBP	31.54	■■■□□ 2.64
PTPN18-205	ENST00000428843	BRINP3	Q76B58	766 aa		31.53	■■■□□ 2.64
PTPN18-205	ENST00000428843	USP32	Q8NFA0	1604 aa		31.52	■■■□□ 2.64
PTPN18-205	ENST00000428843	TULP4	Q9NRJ4	1543 aa		31.51	■■■□□ 2.63
PTPN18-205	ENST00000428843	ORAI2	Q96SN7	254 aa		31.51	■■■□□ 2.63
PTPN18-205	ENST00000428843	CDK19	Q9BWU1	502 aa		31.51	■■■□□ 2.63
PTPN18-205	ENST00000428843	ST20-MTHFS	A0A0A6YYL1	179 aa		31.5	■■■□□ 2.63
PTPN18-205	ENST00000428843	ANKAR	Q7Z5J8	1434 aa		31.49	■■■□□ 2.63
PTPN18-205	ENST00000428843	SBNO2	Q9Y2G9	1366 aa		31.49	■■■□□ 2.63
PTPN18-205	ENST00000428843	ESCO1	Q5FWF5	840 aa		31.48	■■■□□ 2.63
PTPN18-205	ENST00000428843	PRR36	Q9H6K5	1346 aa		31.47	■■■□□ 2.63
PTPN18-205	ENST00000428843	EVC2	Q86UK5	1308 aa		31.46	■■■□□ 2.63
PTPN18-205	ENST00000428843	HSPA1L	P34931	641 aa		31.44	■■■□□ 2.62
PTPN18-205	ENST00000428843	SRPK2	P78362	688 aa	Known RBP	31.43	■■■□□ 2.62
PTPN18-205	ENST00000428843	TESK2	Q96S53	571 aa		31.43	■■■□□ 2.62
PTPN18-205	ENST00000428843	ATP7B	P35670	1465 aa		31.43	■■■□□ 2.62
PTPN18-205	ENST00000428843	NHSL1	Q5SYE7	1610 aa		31.42	■■■□□ 2.62
PTPN18-205	ENST00000428843	AHDC1	Q5TGY3	1603 aa	Predicted RBP	31.42	■■■□□ 2.62
PTPN18-205	ENST00000428843	PHLPP1	O60346	1717 aa		31.42	■■■□□ 2.62
PTPN18-205	ENST00000428843	NUDT16	Q96DE0	195 aa	Known RBP	31.42	■■■□□ 2.62
PTPN18-205	ENST00000428843	CABP2	Q9NPB3	220 aa		31.42	■■■□□ 2.62
PTPN18-205	ENST00000428843	KIF1A	Q12756	1690 aa		31.41	■■■□□ 2.62
PTPN18-205	ENST00000428843	ITSN1	Q15811	1721 aa		31.41	■■■□□ 2.62
PTPN18-205	ENST00000428843	EIF4G2	P78344	907 aa	Known RBP eCLIP	31.39	■■■□□ 2.62
PTPN18-205	ENST00000428843	DDX17	Q92841	729 aa	Known RBP	31.39	■■■□□ 2.62
PTPN18-205	ENST00000428843	TOPAZ1	Q8N9V7	1692 aa		31.38	■■■□□ 2.61
PTPN18-205	ENST00000428843	PHF8	Q9UPP1	1060 aa		31.38	■■■□□ 2.61
PTPN18-205	ENST00000428843	HSPA5	P11021	654 aa	Known RBP	31.36	■■■□□ 2.61
PTPN18-205	ENST00000428843	COL16A1	Q07092	1604 aa	Predicted RBP	31.35	■■■□□ 2.61
PTPN18-205	ENST00000428843	SLC24A1	O60721	1099 aa		31.34	■■■□□ 2.61
PTPN18-205	ENST00000428843	PMFBP1	Q8TBY8	1022 aa		31.34	■■■□□ 2.61
PTPN18-205	ENST00000428843	CCDC61	Q9Y6R9	512 aa		31.34	■■■□□ 2.61
PTPN18-205	ENST00000428843	FOXO3	O43524	673 aa		31.33	■■■□□ 2.61
PTPN18-205	ENST00000428843	NPHP3	Q7Z494	1330 aa		31.31	■■■□□ 2.6
PTPN18-205	ENST00000428843	DISP3	Q9P2K9	1392 aa		31.3	■■■□□ 2.6
PTPN18-205	ENST00000428843	TMF1	P82094	1093 aa		31.29	■■■□□ 2.6
PTPN18-205	ENST00000428843	PPIP5K1	Q6PFW1	1433 aa		31.29	■■■□□ 2.6
PTPN18-205	ENST00000428843	ATAD2	Q6PL18	1390 aa		31.29	■■■□□ 2.6
PTPN18-205	ENST00000428843	PXDN	Q92626	1479 aa		31.27	■■■□□ 2.6
PTPN18-205	ENST00000428843	SOS2	Q07890	1332 aa	Predicted RBP	31.27	■■■□□ 2.6
PTPN18-205	ENST00000428843	XPC	Q01831	940 aa	Predicted RBP	31.27	■■■□□ 2.6
PTPN18-205	ENST00000428843	PLEKHG3	A1L390	1219 aa		31.26	■■■□□ 2.59
PTPN18-205	ENST00000428843	ZEB1	P37275	1124 aa	Predicted RBP	31.25	■■■□□ 2.59
PTPN18-205	ENST00000428843	NGDN	Q8NEJ9	315 aa	Known RBP	31.25	■■■□□ 2.59
PTPN18-205	ENST00000428843	PUS7	Q96PZ0	661 aa	Known RBP	31.25	■■■□□ 2.59
PTPN18-205	ENST00000428843	CABP1	Q9NZU7	370 aa		31.24	■■■□□ 2.59
PTPN18-205	ENST00000428843	PSME1	Q06323	249 aa		31.23	■■■□□ 2.59
PTPN18-205	ENST00000428843	KRT28	Q7Z3Y7	464 aa		31.23	■■■□□ 2.59
PTPN18-205	ENST00000428843	POLR3A	O14802	1390 aa	Predicted RBP	31.22	■■■□□ 2.59
PTPN18-205	ENST00000428843	ACE	P12821	1306 aa		31.22	■■■□□ 2.59
PTPN18-205	ENST00000428843	LRRC59	Q96AG4	307 aa	Known RBP	31.2	■■■□□ 2.59
PTPN18-205	ENST00000428843	CDCA8	Q53HL2	280 aa		31.18	■■■□□ 2.58
PTPN18-205	ENST00000428843	JCAD	Q9P266	1359 aa		31.17	■■■□□ 2.58
PTPN18-205	ENST00000428843	TRPM3	Q9HCF6	1732 aa	Predicted RBP	31.17	■■■□□ 2.58
PTPN18-205	ENST00000428843	SHPRH	Q149N8	1683 aa		31.16	■■■□□ 2.58
PTPN18-205	ENST00000428843	TMC1	Q8TDI8	760 aa		31.16	■■■□□ 2.58
PTPN18-205	ENST00000428843	AKAP12	Q02952	1782 aa		31.15	■■■□□ 2.58
PTPN18-205	ENST00000428843	SBNO1	A3KN83	1393 aa		31.14	■■■□□ 2.58
PTPN18-205	ENST00000428843	SLC12A5	Q9H2X9	1139 aa		31.13	■■■□□ 2.57
PTPN18-205	ENST00000428843	SPATA31A3	Q5VYP0	1347 aa		31.12	■■■□□ 2.57
PTPN18-205	ENST00000428843	PNPLA6	Q8IY17	1366 aa		31.12	■■■□□ 2.57
PTPN18-205	ENST00000428843	TNS3	Q68CZ2	1445 aa		31.11	■■■□□ 2.57
PTPN18-205	ENST00000428843	CPSF1	Q10570	1443 aa	Known RBP	31.1	■■■□□ 2.57
PTPN18-205	ENST00000428843	NINL	Q9Y2I6	1382 aa		31.1	■■■□□ 2.57
PTPN18-205	ENST00000428843	CD163L1	Q9NR16	1453 aa		31.09	■■■□□ 2.57
PTPN18-205	ENST00000428843	C11orf95	C9JLR9	678 aa	Predicted RBP	31.09	■■■□□ 2.57
PTPN18-205	ENST00000428843	USP6	P35125	1406 aa		31.08	■■■□□ 2.57
PTPN18-205	ENST00000428843	MYOM1	P52179	1685 aa		31.08	■■■□□ 2.57
PTPN18-205	ENST00000428843	ALS2	Q96Q42	1657 aa		31.08	■■■□□ 2.57
PTPN18-205	ENST00000428843	PAK3	O75914	559 aa	Predicted RBP	31.07	■■■□□ 2.56
PTPN18-205	ENST00000428843	ZNF692	Q9BU19	519 aa	Predicted RBP	31.07	■■■□□ 2.56
PTPN18-205	ENST00000428843	COL22A1	Q8NFW1	1626 aa	Predicted RBP	31.06	■■■□□ 2.56
PTPN18-205	ENST00000428843	POLR3GL	Q9BT43	218 aa		31.06	■■■□□ 2.56
PTPN18-205	ENST00000428843	MON2	Q7Z3U7	1717 aa		31.06	■■■□□ 2.56
PTPN18-205	ENST00000428843	KTN1	Q86UP2	1357 aa	Known RBP	31.05	■■■□□ 2.56

Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms