RNA–Protein interactions for RNA: ENST00000428842.1

HMGCLL1-206, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 1 (best) BASIC

Gene HMGCLL1, Length 2,437 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-206ENST00000428842 CDK19Q9BWU1 502 aa13.22□□□□□ -0.29
HMGCLL1-206ENST00000428842 LAMC1P11047 1609 aa13.22□□□□□ -0.29
HMGCLL1-206ENST00000428842 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.21□□□□□ -0.29
HMGCLL1-206ENST00000428842 PLEKHG5O94827 1062 aa13.21□□□□□ -0.29
HMGCLL1-206ENST00000428842 SENP3-EIF4A1A0A087X0R7 540 aa13.2□□□□□ -0.3
HMGCLL1-206ENST00000428842 C14orf37Q86TY3 774 aa13.2□□□□□ -0.3
HMGCLL1-206ENST00000428842 PANK3Q9H999 370 aa13.2□□□□□ -0.3
HMGCLL1-206ENST00000428842 EIF3AQ14152 1382 aaKnown RBP13.2□□□□□ -0.3
HMGCLL1-206ENST00000428842 ABCC11Q96J66 1382 aa13.2□□□□□ -0.3
HMGCLL1-206ENST00000428842 PMFBP1Q8TBY8 1022 aa13.18□□□□□ -0.3
HMGCLL1-206ENST00000428842 CC2D1BQ5T0F9 858 aaKnown RBP13.18□□□□□ -0.3
HMGCLL1-206ENST00000428842 CABP1Q9NZU7 370 aa13.18□□□□□ -0.3
HMGCLL1-206ENST00000428842 PRR36Q9H6K5 1346 aa13.17□□□□□ -0.3
HMGCLL1-206ENST00000428842 CHD2O14647 1828 aaKnown RBP13.17□□□□□ -0.3
HMGCLL1-206ENST00000428842 PROSER2Q86WR7 435 aaPredicted RBP13.17□□□□□ -0.3
HMGCLL1-206ENST00000428842 RGPD8O14715 1765 aaPredicted RBP13.17□□□□□ -0.3
HMGCLL1-206ENST00000428842 CCDC184Q52MB2 194 aa13.17□□□□□ -0.3
HMGCLL1-206ENST00000428842 CARD14Q9BXL6 1004 aa13.17□□□□□ -0.3
HMGCLL1-206ENST00000428842 DDX17Q92841 729 aaKnown RBP13.16□□□□□ -0.3
HMGCLL1-206ENST00000428842 FBLN1P23142 703 aa13.15□□□□□ -0.3
HMGCLL1-206ENST00000428842 XPCQ01831 940 aaPredicted RBP13.15□□□□□ -0.3
HMGCLL1-206ENST00000428842 MYOM1P52179 1685 aa13.15□□□□□ -0.3
HMGCLL1-206ENST00000428842 WASLO00401 505 aaPredicted RBP13.14□□□□□ -0.31
HMGCLL1-206ENST00000428842 TNNT2P45379 298 aaPredicted RBP13.14□□□□□ -0.31
HMGCLL1-206ENST00000428842 EVC2Q86UK5 1308 aa13.14□□□□□ -0.31
HMGCLL1-206ENST00000428842 XRN1Q8IZH2 1706 aaKnown RBP13.14□□□□□ -0.31
HMGCLL1-206ENST00000428842 CPS1P31327 1500 aa13.13□□□□□ -0.31
HMGCLL1-206ENST00000428842 TMEM94Q12767 1356 aa13.12□□□□□ -0.31
HMGCLL1-206ENST00000428842 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.12□□□□□ -0.31
HMGCLL1-206ENST00000428842 NUDT16Q96DE0 195 aaKnown RBP13.12□□□□□ -0.31
HMGCLL1-206ENST00000428842 ZRANB1Q9UGI0 708 aa13.12□□□□□ -0.31
HMGCLL1-206ENST00000428842 TECPR2O15040 1411 aa13.12□□□□□ -0.31
HMGCLL1-206ENST00000428842 NALCNQ8IZF0 1738 aa13.12□□□□□ -0.31
HMGCLL1-206ENST00000428842 YTHDC1Q96MU7 727 aaKnown RBP13.12□□□□□ -0.31
HMGCLL1-206ENST00000428842 ORAI2Q96SN7 254 aa13.12□□□□□ -0.31
HMGCLL1-206ENST00000428842 PER1O15534 1290 aaPredicted RBP13.11□□□□□ -0.31
HMGCLL1-206ENST00000428842 NUTM2GQ5VZR2 741 aa13.1□□□□□ -0.31
HMGCLL1-206ENST00000428842 KNDC1Q76NI1 1749 aa13.1□□□□□ -0.31
HMGCLL1-206ENST00000428842 DLC1Q96QB1 1528 aa13.09□□□□□ -0.31
HMGCLL1-206ENST00000428842 DIP2AQ14689 1571 aa13.09□□□□□ -0.31
HMGCLL1-206ENST00000428842 SOX12O15370 315 aa13.09□□□□□ -0.31
HMGCLL1-206ENST00000428842 A0A1W2PP64 1363 aa13.09□□□□□ -0.31
HMGCLL1-206ENST00000428842 FAM135BQ49AJ0 1406 aa13.08□□□□□ -0.32
HMGCLL1-206ENST00000428842 SBNO2Q9Y2G9 1366 aa13.08□□□□□ -0.32
HMGCLL1-206ENST00000428842 ESCO1Q5FWF5 840 aa13.08□□□□□ -0.32
HMGCLL1-206ENST00000428842 PTCH1Q13635 1447 aa13.07□□□□□ -0.32
HMGCLL1-206ENST00000428842 PPIP5K1Q6PFW1 1433 aa13.07□□□□□ -0.32
HMGCLL1-206ENST00000428842 NKTRP30414 1462 aaKnown RBP13.07□□□□□ -0.32
HMGCLL1-206ENST00000428842 GGNBP2Q9H3C7 697 aa13.07□□□□□ -0.32
HMGCLL1-206ENST00000428842 XIRP1Q702N8 1843 aaKnown RBP13.07□□□□□ -0.32
HMGCLL1-206ENST00000428842 USP32Q8NFA0 1604 aa13.07□□□□□ -0.32
HMGCLL1-206ENST00000428842 CD163L1Q9NR16 1453 aa13.07□□□□□ -0.32
HMGCLL1-206ENST00000428842 CENPBP07199 599 aaPredicted RBP13.07□□□□□ -0.32
HMGCLL1-206ENST00000428842 ATP7BP35670 1465 aa13.06□□□□□ -0.32
HMGCLL1-206ENST00000428842 FOXO3O43524 673 aa13.06□□□□□ -0.32
HMGCLL1-206ENST00000428842 NSD3Q9BZ95 1437 aa13.06□□□□□ -0.32
HMGCLL1-206ENST00000428842 PRKRIP1Q9H875 184 aaPredicted RBP13.05□□□□□ -0.32
HMGCLL1-206ENST00000428842 ACEP12821 1306 aa13.05□□□□□ -0.32
HMGCLL1-206ENST00000428842 ANP32CO43423 234 aa13.05□□□□□ -0.32
HMGCLL1-206ENST00000428842 NME9Q86XW9 330 aa13.04□□□□□ -0.32
HMGCLL1-206ENST00000428842 KNSTRNQ9Y448 316 aa13.04□□□□□ -0.32
HMGCLL1-206ENST00000428842 CCDC61Q9Y6R9 512 aa13.04□□□□□ -0.32
HMGCLL1-206ENST00000428842 PIK3R4Q99570 1358 aa13.04□□□□□ -0.32
HMGCLL1-206ENST00000428842 CDCA8Q53HL2 280 aa13.04□□□□□ -0.32
HMGCLL1-206ENST00000428842 AMER1Q5JTC6 1135 aaPredicted RBP13.04□□□□□ -0.32
HMGCLL1-206ENST00000428842 LRRC7Q96NW7 1537 aa13.03□□□□□ -0.32
HMGCLL1-206ENST00000428842 PAK3O75914 559 aaPredicted RBP13.03□□□□□ -0.32
HMGCLL1-206ENST00000428842 NGDNQ8NEJ9 315 aaKnown RBP13.02□□□□□ -0.32
HMGCLL1-206ENST00000428842 SIRT1Q96EB6 747 aa13.02□□□□□ -0.32
HMGCLL1-206ENST00000428842 ADGRL3Q9HAR2 1447 aa13.02□□□□□ -0.33
HMGCLL1-206ENST00000428842 NWD1Q149M9 1564 aa13.02□□□□□ -0.33
HMGCLL1-206ENST00000428842 LMOD2Q6P5Q4 547 aa13.01□□□□□ -0.33
HMGCLL1-206ENST00000428842 C19orf44Q9H6X5 657 aa13.01□□□□□ -0.33
HMGCLL1-206ENST00000428842 KTN1Q86UP2 1357 aaKnown RBP13.01□□□□□ -0.33
HMGCLL1-206ENST00000428842 ATF3P18847 181 aa13□□□□□ -0.33
HMGCLL1-206ENST00000428842 PELP1Q8IZL8 1130 aaKnown RBP13□□□□□ -0.33
HMGCLL1-206ENST00000428842 FYB1O15117 783 aa13□□□□□ -0.33
HMGCLL1-206ENST00000428842 ATAD2Q6PL18 1390 aa12.99□□□□□ -0.33
HMGCLL1-206ENST00000428842 PIP4K2BP78356 416 aa12.99□□□□□ -0.33
HMGCLL1-206ENST00000428842 ANKRD36BQ8N2N9 1353 aa12.98□□□□□ -0.33
HMGCLL1-206ENST00000428842 PPM1GO15355 546 aaPredicted RBP12.98□□□□□ -0.33
HMGCLL1-206ENST00000428842 PHF8Q9UPP1 1060 aa12.98□□□□□ -0.33
HMGCLL1-206ENST00000428842 FMN2Q9NZ56 1722 aa12.98□□□□□ -0.33
HMGCLL1-206ENST00000428842 FAM9BQ8IZU0 186 aa12.98□□□□□ -0.33
HMGCLL1-206ENST00000428842 ADGRB2O60241 1585 aa12.97□□□□□ -0.33
HMGCLL1-206ENST00000428842 HDGFL2Q7Z4V5 671 aaPredicted RBP12.97□□□□□ -0.33
HMGCLL1-206ENST00000428842 TERF2IPQ9NYB0 399 aa12.97□□□□□ -0.33
HMGCLL1-206ENST00000428842 DMRT2Q9Y5R5 561 aa12.97□□□□□ -0.33
HMGCLL1-206ENST00000428842 RRS1Q15050 365 aaKnown RBP12.96□□□□□ -0.33
HMGCLL1-206ENST00000428842 MRS2Q9HD23 443 aa12.96□□□□□ -0.33
HMGCLL1-206ENST00000428842 MSH6P52701 1360 aa12.96□□□□□ -0.33
HMGCLL1-206ENST00000428842 C1orf167Q5SNV9 1468 aa12.96□□□□□ -0.34
HMGCLL1-206ENST00000428842 CABLES1Q8TDN4 633 aa12.96□□□□□ -0.34
HMGCLL1-206ENST00000428842 SLAIN2Q9P270 581 aa12.96□□□□□ -0.34
HMGCLL1-206ENST00000428842 MST1RQ04912 1400 aa12.95□□□□□ -0.34
HMGCLL1-206ENST00000428842 ZBTB7CA1YPR0 619 aa12.95□□□□□ -0.34
HMGCLL1-206ENST00000428842 PSME1Q06323 249 aa12.95□□□□□ -0.34
HMGCLL1-206ENST00000428842 TOPAZ1Q8N9V7 1692 aa12.95□□□□□ -0.34
HMGCLL1-206ENST00000428842 CPSF1Q10570 1443 aaKnown RBP12.95□□□□□ -0.34
HMGCLL1-206ENST00000428842 BRINP3Q76B58 766 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms