RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 PUS7Q96PZ0 661 aaKnown RBP13.87□□□□□ -0.19
HDAC9-210ENST00000428307 TNRQ92752 1358 aa13.86□□□□□ -0.19
HDAC9-210ENST00000428307 ALKQ9UM73 1620 aa13.86□□□□□ -0.19
HDAC9-210ENST00000428307 TULP4Q9NRJ4 1543 aa13.86□□□□□ -0.19
HDAC9-210ENST00000428307 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.86□□□□□ -0.19
HDAC9-210ENST00000428307 ARHGEF28Q8N1W1 1705 aaKnown RBP13.85□□□□□ -0.19
HDAC9-210ENST00000428307 PTPRMP28827 1452 aa13.85□□□□□ -0.19
HDAC9-210ENST00000428307 CDK19Q9BWU1 502 aa13.85□□□□□ -0.19
HDAC9-210ENST00000428307 CGNL1Q0VF96 1302 aa13.84□□□□□ -0.19
HDAC9-210ENST00000428307 CCDC146Q8IYE0 955 aa13.84□□□□□ -0.19
HDAC9-210ENST00000428307 BLMP54132 1417 aaPredicted RBP13.84□□□□□ -0.19
HDAC9-210ENST00000428307 HDGFP51858 240 aaKnown RBP13.83□□□□□ -0.19
HDAC9-210ENST00000428307 PDE3BQ13370 1112 aa13.83□□□□□ -0.2
HDAC9-210ENST00000428307 ANKRD36BQ8N2N9 1353 aa13.83□□□□□ -0.2
HDAC9-210ENST00000428307 TXNDC2Q86VQ3 553 aa13.82□□□□□ -0.2
HDAC9-210ENST00000428307 METP08581 1390 aa13.82□□□□□ -0.2
HDAC9-210ENST00000428307 PLEKHH1Q9ULM0 1364 aa13.82□□□□□ -0.2
HDAC9-210ENST00000428307 INSRP06213 1382 aa13.81□□□□□ -0.2
HDAC9-210ENST00000428307 CABP1Q9NZU7 370 aa13.81□□□□□ -0.2
HDAC9-210ENST00000428307 ERICH6BQ5W0A0 696 aa13.81□□□□□ -0.2
HDAC9-210ENST00000428307 PPP4R2Q9NY27 417 aa13.81□□□□□ -0.2
HDAC9-210ENST00000428307 A0A1W2PP64 1363 aa13.8□□□□□ -0.2
HDAC9-210ENST00000428307 MTHFSP49914 203 aa13.8□□□□□ -0.2
HDAC9-210ENST00000428307 GGNBP2Q9H3C7 697 aa13.8□□□□□ -0.2
HDAC9-210ENST00000428307 TERF2IPQ9NYB0 399 aa13.8□□□□□ -0.2
HDAC9-210ENST00000428307 ATAD2Q6PL18 1390 aa13.79□□□□□ -0.2
HDAC9-210ENST00000428307 TMEM2Q9UHN6 1383 aa13.79□□□□□ -0.2
HDAC9-210ENST00000428307 APAF1O14727 1248 aa13.79□□□□□ -0.2
HDAC9-210ENST00000428307 LTKP29376 864 aa13.79□□□□□ -0.2
HDAC9-210ENST00000428307 B4GALNT3Q6L9W6 998 aa13.79□□□□□ -0.2
HDAC9-210ENST00000428307 RCAN3Q9UKA8 241 aa13.79□□□□□ -0.2
HDAC9-210ENST00000428307 ABCC11Q96J66 1382 aa13.79□□□□□ -0.2
HDAC9-210ENST00000428307 RNF123Q5XPI4 1314 aa13.79□□□□□ -0.2
HDAC9-210ENST00000428307 HDGFL2Q7Z4V5 671 aaPredicted RBP13.76□□□□□ -0.21
HDAC9-210ENST00000428307 TSHZ2Q9NRE2 1034 aa13.76□□□□□ -0.21
HDAC9-210ENST00000428307 POLR3AO14802 1390 aaPredicted RBP13.76□□□□□ -0.21
HDAC9-210ENST00000428307 FYB1O15117 783 aa13.76□□□□□ -0.21
HDAC9-210ENST00000428307 SLC26A8Q96RN1 970 aa13.76□□□□□ -0.21
HDAC9-210ENST00000428307 NINLQ9Y2I6 1382 aa13.76□□□□□ -0.21
HDAC9-210ENST00000428307 WASLO00401 505 aaPredicted RBP13.74□□□□□ -0.21
HDAC9-210ENST00000428307 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.74□□□□□ -0.21
HDAC9-210ENST00000428307 RRP1P56182 461 aaKnown RBP13.74□□□□□ -0.21
HDAC9-210ENST00000428307 GOLGA2Q08379 1002 aa13.74□□□□□ -0.21
HDAC9-210ENST00000428307 CFAP53Q96M91 514 aa13.74□□□□□ -0.21
HDAC9-210ENST00000428307 EID1Q9Y6B2 187 aa13.74□□□□□ -0.21
HDAC9-210ENST00000428307 NCKAP5LQ9HCH0 1330 aa13.73□□□□□ -0.21
HDAC9-210ENST00000428307 NSD2O96028 1365 aa13.73□□□□□ -0.21
HDAC9-210ENST00000428307 NEUROD2Q15784 382 aa13.73□□□□□ -0.21
HDAC9-210ENST00000428307 CD163L1Q9NR16 1453 aa13.73□□□□□ -0.21
HDAC9-210ENST00000428307 ZNF521Q96K83 1311 aa13.73□□□□□ -0.21
HDAC9-210ENST00000428307 NRXN3Q9Y4C0 1643 aa13.72□□□□□ -0.21
HDAC9-210ENST00000428307 DLC1Q96QB1 1528 aa13.72□□□□□ -0.21
HDAC9-210ENST00000428307 PLIN1O60240 522 aa13.72□□□□□ -0.21
HDAC9-210ENST00000428307 DUSP27Q5VZP5 1158 aa13.72□□□□□ -0.21
HDAC9-210ENST00000428307 SPINK5Q9NQ38 1064 aaPredicted RBP13.71□□□□□ -0.21
HDAC9-210ENST00000428307 RRP7AQ9Y3A4 280 aaKnown RBP13.71□□□□□ -0.21
HDAC9-210ENST00000428307 NLRP1Q9C000 1473 aa13.71□□□□□ -0.22
HDAC9-210ENST00000428307 NUTM2FA1L443 756 aa13.71□□□□□ -0.22
HDAC9-210ENST00000428307 NUDT16Q96DE0 195 aaKnown RBP13.71□□□□□ -0.22
HDAC9-210ENST00000428307 U2AF1L5P0DN76 240 aaPredicted RBP13.7□□□□□ -0.22
HDAC9-210ENST00000428307 FBLN1P23142 703 aa13.7□□□□□ -0.22
HDAC9-210ENST00000428307 U2AF1Q01081 240 aaKnown RBP eCLIP13.7□□□□□ -0.22
HDAC9-210ENST00000428307 ROBO2Q9HCK4 1378 aa13.7□□□□□ -0.22
HDAC9-210ENST00000428307 ADAMTS13Q76LX8 1427 aa13.7□□□□□ -0.22
HDAC9-210ENST00000428307 THEMISQ8N1K5 641 aaPredicted RBP13.69□□□□□ -0.22
HDAC9-210ENST00000428307 SETD1AO15047 1707 aaKnown RBP13.69□□□□□ -0.22
HDAC9-210ENST00000428307 UBR1Q8IWV7 1749 aa13.69□□□□□ -0.22
HDAC9-210ENST00000428307 SLFN5Q08AF3 891 aa13.69□□□□□ -0.22
HDAC9-210ENST00000428307 SIRT1Q96EB6 747 aa13.69□□□□□ -0.22
HDAC9-210ENST00000428307 CCDC136Q96JN2 1154 aa13.69□□□□□ -0.22
HDAC9-210ENST00000428307 DMRT2Q9Y5R5 561 aa13.69□□□□□ -0.22
HDAC9-210ENST00000428307 PLEKHG1Q9ULL1 1385 aa13.68□□□□□ -0.22
HDAC9-210ENST00000428307 RUNDC1Q96C34 613 aa13.68□□□□□ -0.22
HDAC9-210ENST00000428307 CCDC61Q9Y6R9 512 aa13.68□□□□□ -0.22
HDAC9-210ENST00000428307 USP32Q8NFA0 1604 aa13.68□□□□□ -0.22
HDAC9-210ENST00000428307 U2SURPO15042 1029 aaKnown RBP13.68□□□□□ -0.22
HDAC9-210ENST00000428307 TCP11L2Q8N4U5 519 aa13.68□□□□□ -0.22
HDAC9-210ENST00000428307 EXOC6Q8TAG9 804 aa13.68□□□□□ -0.22
HDAC9-210ENST00000428307 FAM135BQ49AJ0 1406 aa13.68□□□□□ -0.22
HDAC9-210ENST00000428307 PPM1GO15355 546 aaPredicted RBP13.67□□□□□ -0.22
HDAC9-210ENST00000428307 PPIP5K1Q6PFW1 1433 aa13.67□□□□□ -0.22
HDAC9-210ENST00000428307 WWC1Q8IX03 1113 aa13.67□□□□□ -0.22
HDAC9-210ENST00000428307 AMOTL2Q9Y2J4 779 aa13.66□□□□□ -0.22
HDAC9-210ENST00000428307 TECPR2O15040 1411 aa13.66□□□□□ -0.22
HDAC9-210ENST00000428307 NME9Q86XW9 330 aa13.65□□□□□ -0.22
HDAC9-210ENST00000428307 ZRANB1Q9UGI0 708 aa13.65□□□□□ -0.22
HDAC9-210ENST00000428307 C3P01024 1663 aa13.65□□□□□ -0.22
HDAC9-210ENST00000428307 PRR36Q9H6K5 1346 aa13.65□□□□□ -0.22
HDAC9-210ENST00000428307 E9PSI1 815 aa13.65□□□□□ -0.22
HDAC9-210ENST00000428307 TRMT2AQ8IZ69 625 aaKnown RBP13.65□□□□□ -0.22
HDAC9-210ENST00000428307 NGEFQ8N5V2 710 aa13.64□□□□□ -0.23
HDAC9-210ENST00000428307 TBX22Q9Y458 520 aa13.64□□□□□ -0.23
HDAC9-210ENST00000428307 PTPRUQ92729 1446 aa13.63□□□□□ -0.23
HDAC9-210ENST00000428307 C20orf194Q5TEA3 1177 aa13.63□□□□□ -0.23
HDAC9-210ENST00000428307 POLKQ9UBT6 870 aa13.63□□□□□ -0.23
HDAC9-210ENST00000428307 ATP7BP35670 1465 aa13.62□□□□□ -0.23
HDAC9-210ENST00000428307 CPSF1Q10570 1443 aaKnown RBP13.62□□□□□ -0.23
HDAC9-210ENST00000428307 FER1L4A9Z1Z3 1794 aa13.62□□□□□ -0.23
HDAC9-210ENST00000428307 DIAPH1O60610 1272 aaKnown RBP13.61□□□□□ -0.23
HDAC9-210ENST00000428307 SHPRHQ149N8 1683 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms