RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 COPS2P61201 443 aa8.62□□□□□ -1.03
USP40-204ENST00000427947 MTMR2Q13614 643 aa8.62□□□□□ -1.03
USP40-204ENST00000427947 PRPF38BQ5VTL8 546 aaKnown RBP8.62□□□□□ -1.03
USP40-204ENST00000427947 FBXO31Q5XUX0 539 aaPredicted RBP8.62□□□□□ -1.03
USP40-204ENST00000427947 NR1I2O75469 434 aa8.61□□□□□ -1.03
USP40-204ENST00000427947 RFC5P40937 340 aa8.61□□□□□ -1.03
USP40-204ENST00000427947 SYMPKQ92797 1274 aaKnown RBP8.61□□□□□ -1.03
USP40-204ENST00000427947 Q3C1V9 767 aa8.6□□□□□ -1.03
USP40-204ENST00000427947 RTL5Q5HYW3 569 aaPredicted RBP8.6□□□□□ -1.03
USP40-204ENST00000427947 PPP2R2DQ66LE6 453 aa8.6□□□□□ -1.03
USP40-204ENST00000427947 SCUBE3Q8IX30 993 aa8.6□□□□□ -1.03
USP40-204ENST00000427947 RNF19BQ6ZMZ0 732 aa8.59□□□□□ -1.03
USP40-204ENST00000427947 TSC1Q92574 1164 aa8.58□□□□□ -1.04
USP40-204ENST00000427947 MTRQ99707 1265 aa8.58□□□□□ -1.04
USP40-204ENST00000427947 HCSTQ9UBK5 93 aa8.58□□□□□ -1.04
USP40-204ENST00000427947 SPDYE5A6NIY4 337 aa8.57□□□□□ -1.04
USP40-204ENST00000427947 FMNL1O95466 1100 aaPredicted RBP8.57□□□□□ -1.04
USP40-204ENST00000427947 RETREG3Q86VR2 466 aa8.57□□□□□ -1.04
USP40-204ENST00000427947 AP1G2O75843 785 aa8.56□□□□□ -1.04
USP40-204ENST00000427947 SALL2Q9Y467 1007 aaPredicted RBP8.56□□□□□ -1.04
USP40-204ENST00000427947 CFAP99D6REC4 459 aa8.55□□□□□ -1.04
USP40-204ENST00000427947 TLL1O43897 1013 aa8.55□□□□□ -1.04
USP40-204ENST00000427947 MMRN1Q13201 1228 aa8.55□□□□□ -1.04
USP40-204ENST00000427947 TMEM259Q4ZIN3 620 aa8.55□□□□□ -1.04
USP40-204ENST00000427947 BRICD5Q6PL45 260 aa8.55□□□□□ -1.04
USP40-204ENST00000427947 HELBQ8NG08 1087 aaPredicted RBP8.55□□□□□ -1.04
USP40-204ENST00000427947 PRR7Q8TB68 274 aa8.55□□□□□ -1.04
USP40-204ENST00000427947 THAP11Q96EK4 314 aa8.55□□□□□ -1.04
USP40-204ENST00000427947 ZPR1O75312 459 aa8.54□□□□□ -1.04
USP40-204ENST00000427947 FLIIQ13045 1269 aa8.54□□□□□ -1.04
USP40-204ENST00000427947 C14orf37Q86TY3 774 aa8.54□□□□□ -1.04
USP40-204ENST00000427947 USB1Q9BQ65 265 aaKnown RBP8.54□□□□□ -1.04
USP40-204ENST00000427947 IL21Q9HBE4 155 aa8.54□□□□□ -1.04
USP40-204ENST00000427947 TIMELESSQ9UNS1 1208 aa8.54□□□□□ -1.04
USP40-204ENST00000427947 MCM6Q14566 821 aa8.53□□□□□ -1.04
USP40-204ENST00000427947 TJAP1Q5JTD0 557 aa8.53□□□□□ -1.04
USP40-204ENST00000427947 ZNF516Q92618 1163 aa8.53□□□□□ -1.04
USP40-204ENST00000427947 SPSB2Q99619 263 aa8.53□□□□□ -1.04
USP40-204ENST00000427947 USP17L8P0C7I0 530 aa8.52□□□□□ -1.05
USP40-204ENST00000427947 BANK1Q8NDB2 785 aa8.52□□□□□ -1.05
USP40-204ENST00000427947 CTDSPL2Q05D32 466 aa8.51□□□□□ -1.05
USP40-204ENST00000427947 SNRKQ9NRH2 765 aa8.51□□□□□ -1.05
USP40-204ENST00000427947 ADH1BP00325 375 aa8.5□□□□□ -1.05
USP40-204ENST00000427947 ERICH6Q7L0X2 663 aa8.5□□□□□ -1.05
USP40-204ENST00000427947 PRDM9Q9NQV7 894 aa8.49□□□□□ -1.05
USP40-204ENST00000427947 MSS51Q4VC12 460 aa8.48□□□□□ -1.05
USP40-204ENST00000427947 DESI1Q6ICB0 168 aa8.48□□□□□ -1.05
USP40-204ENST00000427947 FAM160A2Q8N612 972 aaPredicted RBP8.48□□□□□ -1.05
USP40-204ENST00000427947 PER1O15534 1290 aaPredicted RBP8.47□□□□□ -1.05
USP40-204ENST00000427947 UBTFP17480 764 aaKnown RBP8.47□□□□□ -1.05
USP40-204ENST00000427947 JUNDP17535 347 aa8.47□□□□□ -1.05
USP40-204ENST00000427947 KCNC4Q03721 635 aa8.47□□□□□ -1.05
USP40-204ENST00000427947 MTMR14Q8NCE2 650 aa8.47□□□□□ -1.05
USP40-204ENST00000427947 NKX2-3Q8TAU0 364 aa8.47□□□□□ -1.05
USP40-204ENST00000427947 LRRN4Q8WUT4 740 aa8.47□□□□□ -1.05
USP40-204ENST00000427947 ITGBL1O95965 494 aaPredicted RBP8.46□□□□□ -1.06
USP40-204ENST00000427947 SLC6A16Q9GZN6 736 aa8.46□□□□□ -1.06
USP40-204ENST00000427947 HMX1Q9NP08 348 aaPredicted RBP8.46□□□□□ -1.06
USP40-204ENST00000427947 LYPD8Q6UX82 237 aa8.45□□□□□ -1.06
USP40-204ENST00000427947 APBB1O00213 710 aa8.44□□□□□ -1.06
USP40-204ENST00000427947 DXOO77932 396 aaKnown RBP8.44□□□□□ -1.06
USP40-204ENST00000427947 MMP16P51512 607 aa8.44□□□□□ -1.06
USP40-204ENST00000427947 S1PR4O95977 384 aa8.43□□□□□ -1.06
USP40-204ENST00000427947 PTPRNQ16849 979 aa8.43□□□□□ -1.06
USP40-204ENST00000427947 SOCS7O14512 581 aa8.42□□□□□ -1.06
USP40-204ENST00000427947 CLUAP1Q96AJ1 413 aa8.42□□□□□ -1.06
USP40-204ENST00000427947 POM121Q96HA1 1249 aa8.42□□□□□ -1.06
USP40-204ENST00000427947 GJD4Q96KN9 370 aaPredicted RBP8.42□□□□□ -1.06
USP40-204ENST00000427947 NUDT12Q9BQG2 462 aa8.42□□□□□ -1.06
USP40-204ENST00000427947 RAD21O60216 631 aa8.41□□□□□ -1.06
USP40-204ENST00000427947 CCNYL3P0C7X3 344 aa8.41□□□□□ -1.06
USP40-204ENST00000427947 EPS8L1Q8TE68 723 aa8.41□□□□□ -1.06
USP40-204ENST00000427947 CTHP32929 405 aa8.4□□□□□ -1.06
USP40-204ENST00000427947 NR6A1Q15406 480 aa8.4□□□□□ -1.06
USP40-204ENST00000427947 CCDC24Q8N4L8 307 aa8.4□□□□□ -1.06
USP40-204ENST00000427947 TRIM34Q9BYJ4 488 aa8.4□□□□□ -1.06
USP40-204ENST00000427947 ZMYND15Q9H091 742 aa8.4□□□□□ -1.06
USP40-204ENST00000427947 GDPD2Q9HCC8 539 aa8.4□□□□□ -1.06
USP40-204ENST00000427947 PRM3Q9NNZ6 103 aa8.4□□□□□ -1.06
USP40-204ENST00000427947 MAP10Q9P2G4 905 aa8.4□□□□□ -1.06
USP40-204ENST00000427947 COG6Q9Y2V7 657 aa8.4□□□□□ -1.06
USP40-204ENST00000427947 F12P00748 615 aaPredicted RBP8.39□□□□□ -1.07
USP40-204ENST00000427947 TBC1D2BQ9UPU7 963 aa8.39□□□□□ -1.07
USP40-204ENST00000427947 FCF1Q9Y324 198 aaKnown RBP8.39□□□□□ -1.07
USP40-204ENST00000427947 NDUFB9Q9Y6M9 179 aa8.39□□□□□ -1.07
USP40-204ENST00000427947 PPEF1O14829 653 aaPredicted RBP8.37□□□□□ -1.07
USP40-204ENST00000427947 GGCXP38435 758 aa8.37□□□□□ -1.07
USP40-204ENST00000427947 ABL2P42684 1182 aa8.37□□□□□ -1.07
USP40-204ENST00000427947 EVA1BQ9NVM1 165 aa8.37□□□□□ -1.07
USP40-204ENST00000427947 A6NJR5 290 aa8.36□□□□□ -1.07
USP40-204ENST00000427947 KCNH2Q12809 1159 aa8.36□□□□□ -1.07
USP40-204ENST00000427947 PROSER2Q86WR7 435 aaPredicted RBP8.36□□□□□ -1.07
USP40-204ENST00000427947 RNF223E7ERA6 249 aa8.35□□□□□ -1.07
USP40-204ENST00000427947 PPP1R18Q6NYC8 613 aa8.35□□□□□ -1.07
USP40-204ENST00000427947 PNMA1Q8ND90 353 aa8.34□□□□□ -1.07
USP40-204ENST00000427947 UNC93B1Q9H1C4 597 aa8.34□□□□□ -1.07
USP40-204ENST00000427947 GPR37L1O60883 481 aa8.33□□□□□ -1.08
USP40-204ENST00000427947 PTCRAQ6ISU1 281 aaPredicted RBP8.33□□□□□ -1.08
USP40-204ENST00000427947 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.33□□□□□ -1.08
USP40-204ENST00000427947 PLA2G2EQ9NZK7 142 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms