RNA–Protein interactions for RNA: ENST00000427455.1

HERPUD2-205, Transcript of HERPUD family member 2, humanhuman

TSL 3

Gene HERPUD2, Length 672 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-205ENST00000427455 CCER1Q8TC90 406 aaPredicted RBP36.09■■■■□ 3.37
HERPUD2-205ENST00000427455 ARHGEF28Q8N1W1 1705 aaKnown RBP36.08■■■■□ 3.37
HERPUD2-205ENST00000427455 TRAK1Q9UPV9 953 aa36.07■■■■□ 3.36
HERPUD2-205ENST00000427455 PRAM1Q96QH2 718 aa36.06■■■■□ 3.36
HERPUD2-205ENST00000427455 MST1RQ04912 1400 aa36.06■■■■□ 3.36
HERPUD2-205ENST00000427455 NBPF1Q3BBV0 1214 aa36.05■■■■□ 3.36
HERPUD2-205ENST00000427455 POGKQ9P215 609 aa36.02■■■■□ 3.36
HERPUD2-205ENST00000427455 NBPF8Q3BBV2 869 aa35.99■■■■□ 3.35
HERPUD2-205ENST00000427455 ROCK2O75116 1388 aaKnown RBP35.99■■■■□ 3.35
HERPUD2-205ENST00000427455 ADGRB2O60241 1585 aa35.98■■■■□ 3.35
HERPUD2-205ENST00000427455 SAFB2Q14151 953 aaKnown RBP eCLIP35.97■■■■□ 3.35
HERPUD2-205ENST00000427455 HSPA1LP34931 641 aa35.96■■■■□ 3.35
HERPUD2-205ENST00000427455 RALGAPBQ86X10 1494 aa35.96■■■■□ 3.35
HERPUD2-205ENST00000427455 C1orf167Q5SNV9 1468 aa35.95■■■■□ 3.35
HERPUD2-205ENST00000427455 TIMELESSQ9UNS1 1208 aa35.95■■■■□ 3.35
HERPUD2-205ENST00000427455 FMN2Q9NZ56 1722 aa35.94■■■■□ 3.34
HERPUD2-205ENST00000427455 GPRASP1Q5JY77 1395 aa35.93■■■■□ 3.34
HERPUD2-205ENST00000427455 BRINP3Q76B58 766 aa35.9■■■■□ 3.34
HERPUD2-205ENST00000427455 AHDC1Q5TGY3 1603 aaPredicted RBP35.88■■■■□ 3.33
HERPUD2-205ENST00000427455 PHLPP1O60346 1717 aa35.86■■■■□ 3.33
HERPUD2-205ENST00000427455 MINK1Q8N4C8 1332 aaPredicted RBP35.85■■■■□ 3.33
HERPUD2-205ENST00000427455 NHSL1Q5SYE7 1610 aa35.83■■■■□ 3.33
HERPUD2-205ENST00000427455 EIF3AQ14152 1382 aaKnown RBP35.82■■■■□ 3.32
HERPUD2-205ENST00000427455 HIRIP3Q9BW71 556 aaPredicted RBP35.82■■■■□ 3.32
HERPUD2-205ENST00000427455 CENPJQ9HC77 1338 aaPredicted RBP35.82■■■■□ 3.32
HERPUD2-205ENST00000427455 QRICH2Q9H0J4 1663 aa35.81■■■■□ 3.32
HERPUD2-205ENST00000427455 COL16A1Q07092 1604 aaPredicted RBP35.8■■■■□ 3.32
HERPUD2-205ENST00000427455 CARD11Q9BXL7 1154 aa35.79■■■■□ 3.32
HERPUD2-205ENST00000427455 ANKARQ7Z5J8 1434 aa35.78■■■■□ 3.32
HERPUD2-205ENST00000427455 NUTM2FA1L443 756 aa35.78■■■■□ 3.32
HERPUD2-205ENST00000427455 ORAI2Q96SN7 254 aa35.78■■■■□ 3.32
HERPUD2-205ENST00000427455 TULP4Q9NRJ4 1543 aa35.77■■■■□ 3.32
HERPUD2-205ENST00000427455 USP32Q8NFA0 1604 aa35.75■■■■□ 3.31
HERPUD2-205ENST00000427455 WASLO00401 505 aaPredicted RBP35.75■■■■□ 3.31
HERPUD2-205ENST00000427455 ESCO1Q5FWF5 840 aa35.75■■■■□ 3.31
HERPUD2-205ENST00000427455 KIF1AQ12756 1690 aa35.75■■■■□ 3.31
HERPUD2-205ENST00000427455 RGPD8O14715 1765 aaPredicted RBP35.73■■■■□ 3.31
HERPUD2-205ENST00000427455 ATP7BP35670 1465 aa35.67■■■■□ 3.3
HERPUD2-205ENST00000427455 DDX17Q92841 729 aaKnown RBP35.65■■■■□ 3.3
HERPUD2-205ENST00000427455 ITSN1Q15811 1721 aa35.65■■■■□ 3.3
HERPUD2-205ENST00000427455 NPHP3Q7Z494 1330 aa35.64■■■■□ 3.3
HERPUD2-205ENST00000427455 PRR36Q9H6K5 1346 aa35.64■■■■□ 3.3
HERPUD2-205ENST00000427455 CDK19Q9BWU1 502 aa35.63■■■■□ 3.29
HERPUD2-205ENST00000427455 JCADQ9P266 1359 aa35.63■■■■□ 3.29
HERPUD2-205ENST00000427455 SBNO2Q9Y2G9 1366 aa35.63■■■■□ 3.29
HERPUD2-205ENST00000427455 PHF8Q9UPP1 1060 aa35.61■■■■□ 3.29
HERPUD2-205ENST00000427455 SHPRHQ149N8 1683 aa35.61■■■■□ 3.29
HERPUD2-205ENST00000427455 SOS2Q07890 1332 aaPredicted RBP35.6■■■■□ 3.29
HERPUD2-205ENST00000427455 TOPAZ1Q8N9V7 1692 aa35.6■■■■□ 3.29
HERPUD2-205ENST00000427455 PXDNQ92626 1479 aa35.6■■■■□ 3.29
HERPUD2-205ENST00000427455 FOXO3O43524 673 aa35.59■■■■□ 3.29
HERPUD2-205ENST00000427455 NUDT16Q96DE0 195 aaKnown RBP35.57■■■■□ 3.28
HERPUD2-205ENST00000427455 EVC2Q86UK5 1308 aa35.57■■■■□ 3.28
HERPUD2-205ENST00000427455 LRRC59Q96AG4 307 aaKnown RBP35.56■■■■□ 3.28
HERPUD2-205ENST00000427455 SRPK2P78362 688 aaKnown RBP35.55■■■■□ 3.28
HERPUD2-205ENST00000427455 USP47Q96K76 1375 aa35.54■■■■□ 3.28
HERPUD2-205ENST00000427455 MED1Q15648 1581 aaPredicted RBP35.54■■■■□ 3.28
HERPUD2-205ENST00000427455 PMFBP1Q8TBY8 1022 aa35.51■■■■□ 3.28
HERPUD2-205ENST00000427455 CABP2Q9NPB3 220 aa35.5■■■■□ 3.27
HERPUD2-205ENST00000427455 CCDC61Q9Y6R9 512 aa35.5■■■■□ 3.27
HERPUD2-205ENST00000427455 XPCQ01831 940 aaPredicted RBP35.49■■■■□ 3.27
HERPUD2-205ENST00000427455 PNPLA6Q8IY17 1366 aa35.48■■■■□ 3.27
HERPUD2-205ENST00000427455 ST20-MTHFSA0A0A6YYL1 179 aa35.47■■■■□ 3.27
HERPUD2-205ENST00000427455 SPATA31A6Q5VVP1 1343 aa35.47■■■■□ 3.27
HERPUD2-205ENST00000427455 KRT28Q7Z3Y7 464 aa35.45■■■■□ 3.27
HERPUD2-205ENST00000427455 PPIP5K1Q6PFW1 1433 aa35.44■■■■□ 3.26
HERPUD2-205ENST00000427455 PSME1Q06323 249 aa35.43■■■■□ 3.26
HERPUD2-205ENST00000427455 NGDNQ8NEJ9 315 aaKnown RBP35.43■■■■□ 3.26
HERPUD2-205ENST00000427455 COL22A1Q8NFW1 1626 aaPredicted RBP35.43■■■■□ 3.26
HERPUD2-205ENST00000427455 TESK2Q96S53 571 aa35.42■■■■□ 3.26
HERPUD2-205ENST00000427455 POLR3AO14802 1390 aaPredicted RBP35.41■■■■□ 3.26
HERPUD2-205ENST00000427455 ATAD2Q6PL18 1390 aa35.41■■■■□ 3.26
HERPUD2-205ENST00000427455 PLEKHG3A1L390 1219 aa35.41■■■■□ 3.26
HERPUD2-205ENST00000427455 TNS3Q68CZ2 1445 aa35.4■■■■□ 3.26
HERPUD2-205ENST00000427455 TRPM3Q9HCF6 1732 aaPredicted RBP35.4■■■■□ 3.26
HERPUD2-205ENST00000427455 SBNO1A3KN83 1393 aa35.4■■■■□ 3.26
HERPUD2-205ENST00000427455 SLC24A1O60721 1099 aa35.4■■■■□ 3.26
HERPUD2-205ENST00000427455 SPATA31A3Q5VYP0 1347 aa35.38■■■■□ 3.25
HERPUD2-205ENST00000427455 LRP6O75581 1613 aa35.38■■■■□ 3.25
HERPUD2-205ENST00000427455 ACEP12821 1306 aa35.36■■■■□ 3.25
HERPUD2-205ENST00000427455 CABP1Q9NZU7 370 aa35.32■■■■□ 3.24
HERPUD2-205ENST00000427455 ARHGEF10O15013 1369 aa35.32■■■■□ 3.24
HERPUD2-205ENST00000427455 DISP3Q9P2K9 1392 aa35.32■■■■□ 3.24
HERPUD2-205ENST00000427455 ALS2Q96Q42 1657 aa35.32■■■■□ 3.24
HERPUD2-205ENST00000427455 PUS7Q96PZ0 661 aaKnown RBP35.31■■■■□ 3.24
HERPUD2-205ENST00000427455 NUTM2BA6NNL0 878 aaPredicted RBP35.28■■■■□ 3.24
HERPUD2-205ENST00000427455 NUTM2EB1AL46 878 aaPredicted RBP35.28■■■■□ 3.24
HERPUD2-205ENST00000427455 NUTM2AQ8IVF1 878 aaPredicted RBP35.28■■■■□ 3.24
HERPUD2-205ENST00000427455 EIF4G2P78344 907 aaKnown RBP eCLIP35.27■■■■□ 3.24
HERPUD2-205ENST00000427455 TMF1P82094 1093 aa35.27■■■■□ 3.24
HERPUD2-205ENST00000427455 PHF23Q9BUL5 403 aaPredicted RBP35.25■■■■□ 3.23
HERPUD2-205ENST00000427455 AKAP12Q02952 1782 aa35.25■■■■□ 3.23
HERPUD2-205ENST00000427455 LMOD2Q6P5Q4 547 aa35.24■■■■□ 3.23
HERPUD2-205ENST00000427455 BRD4O60885 1362 aaPredicted RBP35.24■■■■□ 3.23
HERPUD2-205ENST00000427455 USP6P35125 1406 aa35.23■■■■□ 3.23
HERPUD2-205ENST00000427455 PAK3O75914 559 aaPredicted RBP35.23■■■■□ 3.23
HERPUD2-205ENST00000427455 MEX3CQ5U5Q3 659 aaKnown RBP35.23■■■■□ 3.23
HERPUD2-205ENST00000427455 ABCA3Q99758 1704 aa35.21■■■■□ 3.23
HERPUD2-205ENST00000427455 NINLQ9Y2I6 1382 aa35.21■■■■□ 3.23
HERPUD2-205ENST00000427455 HSPA5P11021 654 aaKnown RBP35.2■■■■□ 3.23
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms