RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 RSPH4AQ5TD94 716 aa10.98□□□□□ -0.65
USP40-203ENST00000427112 MAPK8IP3Q9UPT6 1336 aa10.98□□□□□ -0.65
USP40-203ENST00000427112 ZMYM4Q5VZL5 1548 aa10.98□□□□□ -0.65
USP40-203ENST00000427112 RIPK4P57078 832 aa10.98□□□□□ -0.65
USP40-203ENST00000427112 DCTN1Q14203 1278 aa10.98□□□□□ -0.65
USP40-203ENST00000427112 NOL8Q76FK4 1167 aaKnown RBP10.98□□□□□ -0.65
USP40-203ENST00000427112 CFAP53Q96M91 514 aa10.98□□□□□ -0.65
USP40-203ENST00000427112 WASHC2CQ9Y4E1 1318 aa10.97□□□□□ -0.65
USP40-203ENST00000427112 NKTRP30414 1462 aaKnown RBP10.97□□□□□ -0.65
USP40-203ENST00000427112 CGNL1Q0VF96 1302 aa10.97□□□□□ -0.65
USP40-203ENST00000427112 ANKRD45Q5TZF3 282 aa10.97□□□□□ -0.65
USP40-203ENST00000427112 DZIP1LQ8IYY4 767 aaKnown RBP10.97□□□□□ -0.65
USP40-203ENST00000427112 TMEM57Q8N5G2 664 aa10.97□□□□□ -0.65
USP40-203ENST00000427112 ATAD2Q6PL18 1390 aa10.97□□□□□ -0.65
USP40-203ENST00000427112 CHAMP1Q96JM3 812 aa10.97□□□□□ -0.65
USP40-203ENST00000427112 RRAGDQ9NQL2 400 aaPredicted RBP10.97□□□□□ -0.65
USP40-203ENST00000427112 TTC37Q6PGP7 1564 aa10.96□□□□□ -0.65
USP40-203ENST00000427112 C22orf23Q9BZE7 217 aa10.96□□□□□ -0.65
USP40-203ENST00000427112 RWDD1Q9H446 243 aaPredicted RBP10.96□□□□□ -0.65
USP40-203ENST00000427112 ZRANB1Q9UGI0 708 aa10.96□□□□□ -0.65
USP40-203ENST00000427112 NCKAP5LQ9HCH0 1330 aa10.96□□□□□ -0.66
USP40-203ENST00000427112 POLR1AO95602 1720 aaPredicted RBP10.96□□□□□ -0.66
USP40-203ENST00000427112 TRIM27P14373 513 aa10.96□□□□□ -0.66
USP40-203ENST00000427112 ADCY10Q96PN6 1610 aa10.95□□□□□ -0.66
USP40-203ENST00000427112 CLASP1Q7Z460 1538 aa10.95□□□□□ -0.66
USP40-203ENST00000427112 ZKSCAN2Q63HK3 967 aa10.95□□□□□ -0.66
USP40-203ENST00000427112 TRPM1Q7Z4N2 1603 aa10.95□□□□□ -0.66
USP40-203ENST00000427112 MPNDQ8N594 471 aa10.95□□□□□ -0.66
USP40-203ENST00000427112 NOS1P29475 1434 aa10.95□□□□□ -0.66
USP40-203ENST00000427112 HSP90AB1P08238 724 aaKnown RBP10.94□□□□□ -0.66
USP40-203ENST00000427112 NECTIN2Q92692 538 aa10.94□□□□□ -0.66
USP40-203ENST00000427112 KANK1Q14678 1352 aa10.94□□□□□ -0.66
USP40-203ENST00000427112 FAM83GA6ND36 823 aa10.94□□□□□ -0.66
USP40-203ENST00000427112 KRT24Q2M2I5 525 aa10.93□□□□□ -0.66
USP40-203ENST00000427112 GPRASP1Q5JY77 1395 aa10.93□□□□□ -0.66
USP40-203ENST00000427112 WAPLQ7Z5K2 1190 aa10.93□□□□□ -0.66
USP40-203ENST00000427112 PMFBP1Q8TBY8 1022 aa10.93□□□□□ -0.66
USP40-203ENST00000427112 ABCA8O94911 1581 aa10.93□□□□□ -0.66
USP40-203ENST00000427112 PDE3AQ14432 1141 aa10.92□□□□□ -0.66
USP40-203ENST00000427112 MVPQ14764 893 aaKnown RBP10.92□□□□□ -0.66
USP40-203ENST00000427112 TSPYL6Q8N831 410 aa10.92□□□□□ -0.66
USP40-203ENST00000427112 SCAF11Q99590 1463 aaKnown RBP10.92□□□□□ -0.66
USP40-203ENST00000427112 ASXL1Q8IXJ9 1541 aa10.92□□□□□ -0.66
USP40-203ENST00000427112 TRMT2AQ8IZ69 625 aaKnown RBP10.92□□□□□ -0.66
USP40-203ENST00000427112 PRAM1Q96QH2 718 aa10.92□□□□□ -0.66
USP40-203ENST00000427112 MIS18AQ9NYP9 233 aa10.92□□□□□ -0.66
USP40-203ENST00000427112 NUP160Q12769 1436 aa10.91□□□□□ -0.66
USP40-203ENST00000427112 FBXO31Q5XUX0 539 aaPredicted RBP10.91□□□□□ -0.66
USP40-203ENST00000427112 CABP1Q9NZU7 370 aa10.91□□□□□ -0.66
USP40-203ENST00000427112 EIF3AQ14152 1382 aaKnown RBP10.91□□□□□ -0.66
USP40-203ENST00000427112 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.91□□□□□ -0.66
USP40-203ENST00000427112 CROCC2H7BZ55 1655 aa10.91□□□□□ -0.66
USP40-203ENST00000427112 CDC42BPBQ9Y5S2 1711 aa10.91□□□□□ -0.66
USP40-203ENST00000427112 XRCC6P12956 609 aaKnown RBP eCLIP10.91□□□□□ -0.66
USP40-203ENST00000427112 PRKAR2BP31323 418 aa10.91□□□□□ -0.66
USP40-203ENST00000427112 RRS1Q15050 365 aaKnown RBP10.91□□□□□ -0.66
USP40-203ENST00000427112 HSCBQ8IWL3 235 aa10.91□□□□□ -0.66
USP40-203ENST00000427112 MYH16Q9H6N6 1097 aa10.91□□□□□ -0.66
USP40-203ENST00000427112 GOLGA6L3A6NEY3 463 aa10.91□□□□□ -0.66
USP40-203ENST00000427112 TRAK2O60296 914 aa10.9□□□□□ -0.66
USP40-203ENST00000427112 CD2BP2O95400 341 aaKnown RBP10.9□□□□□ -0.66
USP40-203ENST00000427112 TMPOP42166 694 aaKnown RBP10.9□□□□□ -0.66
USP40-203ENST00000427112 TSHZ3Q63HK5 1081 aa10.9□□□□□ -0.66
USP40-203ENST00000427112 C16orf71Q8IYS4 520 aaPredicted RBP10.9□□□□□ -0.66
USP40-203ENST00000427112 TBC1D32Q96NH3 1257 aa10.9□□□□□ -0.66
USP40-203ENST00000427112 SMARCA5O60264 1052 aaPredicted RBP10.89□□□□□ -0.67
USP40-203ENST00000427112 PHACTR3Q96KR7 559 aa10.89□□□□□ -0.67
USP40-203ENST00000427112 EMILIN1Q9Y6C2 1016 aa10.89□□□□□ -0.67
USP40-203ENST00000427112 SHANK2Q9UPX8 1470 aa10.89□□□□□ -0.67
USP40-203ENST00000427112 MCM4P33991 863 aa10.88□□□□□ -0.67
USP40-203ENST00000427112 NPM1P06748 294 aaKnown RBP eCLIP10.88□□□□□ -0.67
USP40-203ENST00000427112 PRDM15P57071 1507 aaPredicted RBP10.88□□□□□ -0.67
USP40-203ENST00000427112 ATP10AO60312 1499 aa10.87□□□□□ -0.67
USP40-203ENST00000427112 SLC4A10Q6U841 1118 aa10.87□□□□□ -0.67
USP40-203ENST00000427112 INSRP06213 1382 aa10.87□□□□□ -0.67
USP40-203ENST00000427112 ATF7IPQ6VMQ6 1270 aa10.87□□□□□ -0.67
USP40-203ENST00000427112 OTUD7AQ8TE49 926 aaPredicted RBP10.87□□□□□ -0.67
USP40-203ENST00000427112 ERVK-7P63135 1459 aa10.86□□□□□ -0.67
USP40-203ENST00000427112 IDI1Q13907 227 aa10.86□□□□□ -0.67
USP40-203ENST00000427112 TRIM35Q9UPQ4 493 aa10.86□□□□□ -0.67
USP40-203ENST00000427112 E9PCH4 1651 aa10.86□□□□□ -0.67
USP40-203ENST00000427112 DIAPH1O60610 1272 aaKnown RBP10.85□□□□□ -0.67
USP40-203ENST00000427112 MYO5CQ9NQX4 1742 aa10.85□□□□□ -0.67
USP40-203ENST00000427112 EVC2Q86UK5 1308 aa10.85□□□□□ -0.67
USP40-203ENST00000427112 FYB1O15117 783 aa10.84□□□□□ -0.67
USP40-203ENST00000427112 SSFA2P28290 1259 aa10.84□□□□□ -0.67
USP40-203ENST00000427112 ANTXR1Q9H6X2 564 aa10.84□□□□□ -0.67
USP40-203ENST00000427112 NUTM2GQ5VZR2 741 aa10.84□□□□□ -0.67
USP40-203ENST00000427112 NME9Q86XW9 330 aa10.84□□□□□ -0.67
USP40-203ENST00000427112 LARP6Q9BRS8 491 aaKnown RBP10.84□□□□□ -0.67
USP40-203ENST00000427112 PNNQ9H307 717 aaKnown RBP10.84□□□□□ -0.67
USP40-203ENST00000427112 PLCH2O75038 1416 aa10.84□□□□□ -0.67
USP40-203ENST00000427112 GAS2L3Q86XJ1 694 aa10.83□□□□□ -0.68
USP40-203ENST00000427112 TNPO1Q92973 898 aaKnown RBP10.83□□□□□ -0.68
USP40-203ENST00000427112 CDK19Q9BWU1 502 aa10.83□□□□□ -0.68
USP40-203ENST00000427112 PIK3C2GO75747 1445 aa10.83□□□□□ -0.68
USP40-203ENST00000427112 PKP1Q13835 747 aa10.82□□□□□ -0.68
USP40-203ENST00000427112 DDX19BQ9UMR2 479 aa10.82□□□□□ -0.68
USP40-203ENST00000427112 MCM10Q7L590 875 aa10.82□□□□□ -0.68
USP40-203ENST00000427112 TRIM44Q96DX7 344 aaPredicted RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms