RNA–Protein interactions for RNA: ENST00000426248.7

PKP4-205, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 4,134 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-205ENST00000426248 ABCA6Q8N139 1617 aa20.51■□□□□ 0.87
PKP4-205ENST00000426248 ANKLE2Q86XL3 938 aa20.51■□□□□ 0.87
PKP4-205ENST00000426248 TRPM2O94759 1503 aa20.51■□□□□ 0.87
PKP4-205ENST00000426248 BACH2Q9BYV9 841 aa20.51■□□□□ 0.87
PKP4-205ENST00000426248 DIP2CQ9Y2E4 1556 aa20.51■□□□□ 0.87
PKP4-205ENST00000426248 CCDC146Q8IYE0 955 aa20.51■□□□□ 0.87
PKP4-205ENST00000426248 GZF1Q9H116 711 aaPredicted RBP20.51■□□□□ 0.87
PKP4-205ENST00000426248 CGNL1Q0VF96 1302 aa20.5■□□□□ 0.87
PKP4-205ENST00000426248 RIMS2Q9UQ26 1411 aa20.5■□□□□ 0.87
PKP4-205ENST00000426248 GLI2P10070 1586 aa20.5■□□□□ 0.87
PKP4-205ENST00000426248 RGS3P49796 1198 aa20.5■□□□□ 0.87
PKP4-205ENST00000426248 EFCAB6Q5THR3 1501 aa20.5■□□□□ 0.87
PKP4-205ENST00000426248 KDM5CP41229 1560 aa20.5■□□□□ 0.87
PKP4-205ENST00000426248 TET3O43151 1660 aa20.49■□□□□ 0.87
PKP4-205ENST00000426248 ARID3AQ99856 593 aa20.49■□□□□ 0.87
PKP4-205ENST00000426248 SLKQ9H2G2 1235 aaPredicted RBP20.49■□□□□ 0.87
PKP4-205ENST00000426248 E9PCH4 1651 aa20.47■□□□□ 0.87
PKP4-205ENST00000426248 U2AF1L5P0DN76 240 aaPredicted RBP20.47■□□□□ 0.87
PKP4-205ENST00000426248 U2AF1Q01081 240 aaKnown RBP eCLIP20.47■□□□□ 0.87
PKP4-205ENST00000426248 PMFBP1Q8TBY8 1022 aa20.46■□□□□ 0.87
PKP4-205ENST00000426248 CANXP27824 592 aaKnown RBP20.45■□□□□ 0.86
PKP4-205ENST00000426248 AMOTL2Q9Y2J4 779 aa20.45■□□□□ 0.86
PKP4-205ENST00000426248 CEP152O94986 1710 aa20.44■□□□□ 0.86
PKP4-205ENST00000426248 CLTCL1P53675 1640 aa20.44■□□□□ 0.86
PKP4-205ENST00000426248 L1TD1Q5T7N2 865 aaKnown RBP20.44■□□□□ 0.86
PKP4-205ENST00000426248 MAP3K4Q9Y6R4 1608 aa20.44■□□□□ 0.86
PKP4-205ENST00000426248 GPRASP1Q5JY77 1395 aa20.42■□□□□ 0.86
PKP4-205ENST00000426248 LTKP29376 864 aa20.42■□□□□ 0.86
PKP4-205ENST00000426248 PPP2R1AP30153 589 aa20.42■□□□□ 0.86
PKP4-205ENST00000426248 PLIN1O60240 522 aa20.41■□□□□ 0.86
PKP4-205ENST00000426248 RRAGDQ9NQL2 400 aaPredicted RBP20.41■□□□□ 0.86
PKP4-205ENST00000426248 EIF2AK4Q9P2K8 1649 aaKnown RBP20.4■□□□□ 0.86
PKP4-205ENST00000426248 RCAN3Q9UKA8 241 aa20.4■□□□□ 0.86
PKP4-205ENST00000426248 FRMPD1Q5SYB0 1578 aa20.4■□□□□ 0.86
PKP4-205ENST00000426248 PPRC1Q5VV67 1664 aaKnown RBP20.39■□□□□ 0.86
PKP4-205ENST00000426248 ERVK-7P63135 1459 aa20.39■□□□□ 0.85
PKP4-205ENST00000426248 RNF17Q9BXT8 1623 aaKnown RBP20.39■□□□□ 0.85
PKP4-205ENST00000426248 TRIM44Q96DX7 344 aaPredicted RBP20.39■□□□□ 0.85
PKP4-205ENST00000426248 MAPK8IP3Q9UPT6 1336 aa20.38■□□□□ 0.85
PKP4-205ENST00000426248 RRP9O43818 475 aaKnown RBP20.38■□□□□ 0.85
PKP4-205ENST00000426248 MTHFSP49914 203 aa20.38■□□□□ 0.85
PKP4-205ENST00000426248 NUTM2GQ5VZR2 741 aa20.38■□□□□ 0.85
PKP4-205ENST00000426248 RRP1P56182 461 aaKnown RBP20.38■□□□□ 0.85
PKP4-205ENST00000426248 SPRYD3Q8NCJ5 442 aa20.38■□□□□ 0.85
PKP4-205ENST00000426248 NUDT16Q96DE0 195 aaKnown RBP20.38■□□□□ 0.85
PKP4-205ENST00000426248 RRP7AQ9Y3A4 280 aaKnown RBP20.37■□□□□ 0.85
PKP4-205ENST00000426248 SPHKAPQ2M3C7 1700 aa20.37■□□□□ 0.85
PKP4-205ENST00000426248 MS4A1P11836 297 aa20.37■□□□□ 0.85
PKP4-205ENST00000426248 PNISRQ8TF01 805 aaKnown RBP20.37■□□□□ 0.85
PKP4-205ENST00000426248 ADAMTS8Q9UP79 889 aa20.37■□□□□ 0.85
PKP4-205ENST00000426248 ARHGAP31Q2M1Z3 1444 aa20.36■□□□□ 0.85
PKP4-205ENST00000426248 NSD3Q9BZ95 1437 aa20.36■□□□□ 0.85
PKP4-205ENST00000426248 PROSER2Q86WR7 435 aaPredicted RBP20.36■□□□□ 0.85
PKP4-205ENST00000426248 COG3Q96JB2 828 aa20.36■□□□□ 0.85
PKP4-205ENST00000426248 HSPA2P54652 639 aa20.36■□□□□ 0.85
PKP4-205ENST00000426248 CCDC61Q9Y6R9 512 aa20.34■□□□□ 0.85
PKP4-205ENST00000426248 WASLO00401 505 aaPredicted RBP20.34■□□□□ 0.85
PKP4-205ENST00000426248 NCKAP5LQ9HCH0 1330 aa20.34■□□□□ 0.85
PKP4-205ENST00000426248 KIF1BO60333 1816 aa20.33■□□□□ 0.85
PKP4-205ENST00000426248 YTHDC2Q9H6S0 1430 aaKnown RBP20.33■□□□□ 0.84
PKP4-205ENST00000426248 BRD4O60885 1362 aaPredicted RBP20.33■□□□□ 0.84
PKP4-205ENST00000426248 PER1O15534 1290 aaPredicted RBP20.33■□□□□ 0.84
PKP4-205ENST00000426248 HAP1P54257 671 aaPredicted RBP20.33■□□□□ 0.84
PKP4-205ENST00000426248 TMEM2Q9UHN6 1383 aa20.33■□□□□ 0.84
PKP4-205ENST00000426248 GOLGA6L3A6NEY3 463 aa20.32■□□□□ 0.84
PKP4-205ENST00000426248 APAF1O14727 1248 aa20.32■□□□□ 0.84
PKP4-205ENST00000426248 ATAD2Q6PL18 1390 aa20.32■□□□□ 0.84
PKP4-205ENST00000426248 CARD14Q9BXL6 1004 aa20.32■□□□□ 0.84
PKP4-205ENST00000426248 LMTK2Q8IWU2 1503 aa20.31■□□□□ 0.84
PKP4-205ENST00000426248 LTV1Q96GA3 475 aaPredicted RBP20.3■□□□□ 0.84
PKP4-205ENST00000426248 ESCO1Q5FWF5 840 aa20.3■□□□□ 0.84
PKP4-205ENST00000426248 RICTORQ6R327 1708 aa20.3■□□□□ 0.84
PKP4-205ENST00000426248 AMER1Q5JTC6 1135 aaPredicted RBP20.29■□□□□ 0.84
PKP4-205ENST00000426248 PSME1Q06323 249 aa20.29■□□□□ 0.84
PKP4-205ENST00000426248 FBLN1P23142 703 aa20.29■□□□□ 0.84
PKP4-205ENST00000426248 SMG6Q86US8 1419 aaKnown RBP20.28■□□□□ 0.84
PKP4-205ENST00000426248 BECN1Q14457 450 aa20.28■□□□□ 0.84
PKP4-205ENST00000426248 PIK3C2GO75747 1445 aa20.28■□□□□ 0.84
PKP4-205ENST00000426248 KCNA6P17658 529 aa20.27■□□□□ 0.84
PKP4-205ENST00000426248 CAMSAP1Q5T5Y3 1602 aa20.27■□□□□ 0.84
PKP4-205ENST00000426248 MROH1Q8NDA8 1641 aa20.26■□□□□ 0.83
PKP4-205ENST00000426248 AMPHP49418 695 aa20.26■□□□□ 0.83
PKP4-205ENST00000426248 METP08581 1390 aa20.26■□□□□ 0.83
PKP4-205ENST00000426248 XPCQ01831 940 aaPredicted RBP20.26■□□□□ 0.83
PKP4-205ENST00000426248 MYOM2P54296 1465 aa20.26■□□□□ 0.83
PKP4-205ENST00000426248 PLEKHH1Q9ULM0 1364 aa20.25■□□□□ 0.83
PKP4-205ENST00000426248 NLRP6P59044 892 aa20.25■□□□□ 0.83
PKP4-205ENST00000426248 NME9Q86XW9 330 aa20.25■□□□□ 0.83
PKP4-205ENST00000426248 CLTCQ00610 1675 aaKnown RBP20.25■□□□□ 0.83
PKP4-205ENST00000426248 RBM10P98175 930 aaKnown RBP20.25■□□□□ 0.83
PKP4-205ENST00000426248 CRBNQ96SW2 442 aa20.25■□□□□ 0.83
PKP4-205ENST00000426248 ZMYM4Q5VZL5 1548 aa20.24■□□□□ 0.83
PKP4-205ENST00000426248 VWDEQ8N2E2 1590 aa20.24■□□□□ 0.83
PKP4-205ENST00000426248 DEPDC5O75140 1603 aa20.24■□□□□ 0.83
PKP4-205ENST00000426248 ATF3P18847 181 aa20.23■□□□□ 0.83
PKP4-205ENST00000426248 ARHGEF40Q8TER5 1519 aa20.23■□□□□ 0.83
PKP4-205ENST00000426248 A2ML1A8K2U0 1454 aa20.23■□□□□ 0.83
PKP4-205ENST00000426248 DIAPH1O60610 1272 aaKnown RBP20.22■□□□□ 0.83
PKP4-205ENST00000426248 HMOX1P09601 288 aa20.22■□□□□ 0.83
PKP4-205ENST00000426248 TBX22Q9Y458 520 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms