RNA–Protein interactions for RNA: ENST00000425413.5

UBR4-207, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 2,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-207ENST00000425413 GGNBP2Q9H3C7 697 aa15.18■□□□□ 0.02
UBR4-207ENST00000425413 INSRP06213 1382 aa15.17■□□□□ 0.02
UBR4-207ENST00000425413 FANCIQ9NVI1 1328 aa15.17■□□□□ 0.02
UBR4-207ENST00000425413 SETBP1Q9Y6X0 1596 aa15.17■□□□□ 0.02
UBR4-207ENST00000425413 NEXMIFQ5QGS0 1516 aa15.17■□□□□ 0.02
UBR4-207ENST00000425413 QRICH2Q9H0J4 1663 aa15.17■□□□□ 0.02
UBR4-207ENST00000425413 GLI2P10070 1586 aa15.16■□□□□ 0.02
UBR4-207ENST00000425413 RIMBP3CA6NJZ7 1639 aa15.16■□□□□ 0.02
UBR4-207ENST00000425413 RIMBP3BA6NNM3 1639 aa15.16■□□□□ 0.02
UBR4-207ENST00000425413 RIMBP3Q9UFD9 1639 aa15.16■□□□□ 0.02
UBR4-207ENST00000425413 BCAR3O75815 825 aa15.15■□□□□ 0.02
UBR4-207ENST00000425413 ARHGAP31Q2M1Z3 1444 aa15.15■□□□□ 0.02
UBR4-207ENST00000425413 NPM2Q86SE8 214 aaKnown RBP15.14■□□□□ 0.01
UBR4-207ENST00000425413 PIK3C2BO00750 1634 aa15.14■□□□□ 0.01
UBR4-207ENST00000425413 PLPPR3Q6T4P5 718 aa15.14■□□□□ 0.01
UBR4-207ENST00000425413 WAPLQ7Z5K2 1190 aa15.14■□□□□ 0.01
UBR4-207ENST00000425413 U2AF1L5P0DN76 240 aaPredicted RBP15.13■□□□□ 0.01
UBR4-207ENST00000425413 U2AF1Q01081 240 aaKnown RBP eCLIP15.13■□□□□ 0.011e-7■■□□□ 11.6
UBR4-207ENST00000425413 TULP4Q9NRJ4 1543 aa15.13■□□□□ 0.01
UBR4-207ENST00000425413 MYO3AQ8NEV4 1616 aa15.13■□□□□ 0.01
UBR4-207ENST00000425413 TCP11L2Q8N4U5 519 aa15.12■□□□□ 0.01
UBR4-207ENST00000425413 WWC1Q8IX03 1113 aa15.12■□□□□ 0.01
UBR4-207ENST00000425413 ESF1Q9H501 851 aaKnown RBP15.12■□□□□ 0.01
UBR4-207ENST00000425413 U2SURPO15042 1029 aaKnown RBP15.12■□□□□ 0.01
UBR4-207ENST00000425413 CFAP53Q96M91 514 aa15.12■□□□□ 0.01
UBR4-207ENST00000425413 POLR3AO14802 1390 aaPredicted RBP15.11■□□□□ 0.01
UBR4-207ENST00000425413 A0A1W2PP64 1363 aa15.11■□□□□ 0.01
UBR4-207ENST00000425413 E9PSI1 815 aa15.1■□□□□ 0.01
UBR4-207ENST00000425413 FBLN1P23142 703 aa15.1■□□□□ 0.01
UBR4-207ENST00000425413 MYO5BQ9ULV0 1848 aa15.1■□□□□ 0.01
UBR4-207ENST00000425413 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.1■□□□□ 0.01
UBR4-207ENST00000425413 CDK19Q9BWU1 502 aa15.1■□□□□ 0.01
UBR4-207ENST00000425413 CABP1Q9NZU7 370 aa15.1■□□□□ 0.01
UBR4-207ENST00000425413 ANKRD36BQ8N2N9 1353 aa15.1■□□□□ 0.01
UBR4-207ENST00000425413 DIP2BQ9P265 1576 aa15.1■□□□□ 0.01
UBR4-207ENST00000425413 PPM1GO15355 546 aaPredicted RBP15.09■□□□□ 0.01
UBR4-207ENST00000425413 RUNDC1Q96C34 613 aa15.09■□□□□ 0.01
UBR4-207ENST00000425413 YTHDC2Q9H6S0 1430 aaKnown RBP15.09■□□□□ 0.01
UBR4-207ENST00000425413 CANXP27824 592 aaKnown RBP15.09■□□□□ 0.01
UBR4-207ENST00000425413 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.09■□□□□ 0.01
UBR4-207ENST00000425413 FRAT1Q92837 279 aaPredicted RBP15.09■□□□□ 0.01
UBR4-207ENST00000425413 BCL2L13Q9BXK5 485 aa15.09■□□□□ 0.01
UBR4-207ENST00000425413 PREX1Q8TCU6 1659 aa15.08■□□□□ 0
UBR4-207ENST00000425413 TRMT2AQ8IZ69 625 aaKnown RBP15.07■□□□□ 0
UBR4-207ENST00000425413 ARHGEF28Q8N1W1 1705 aaKnown RBP15.07■□□□□ 0
UBR4-207ENST00000425413 TERF2IPQ9NYB0 399 aa15.06■□□□□ 0
UBR4-207ENST00000425413 ZC3H13Q5T200 1668 aaKnown RBP15.06■□□□□ 0
UBR4-207ENST00000425413 TMEM131LA2VDJ0 1609 aa15.06■□□□□ 0
UBR4-207ENST00000425413 FYB1O15117 783 aa15.06■□□□□ 0
UBR4-207ENST00000425413 ANP32AP39687 249 aaKnown RBP15.06■□□□□ 0
UBR4-207ENST00000425413 NKTRP30414 1462 aaKnown RBP15.06■□□□□ 0
UBR4-207ENST00000425413 PAK3O75914 559 aaPredicted RBP15.05■□□□□ 0
UBR4-207ENST00000425413 TXNDC2Q86VQ3 553 aa15.05■□□□□ 0
UBR4-207ENST00000425413 PDE4AP27815 886 aa15.05■□□□□ -0
UBR4-207ENST00000425413 PANK1Q8TE04 598 aa15.05■□□□□ -0
UBR4-207ENST00000425413 ZFYVE9O95405 1425 aa15.04■□□□□ -0
UBR4-207ENST00000425413 TCERG1O14776 1098 aaKnown RBP15.04■□□□□ -0
UBR4-207ENST00000425413 PTPRMP28827 1452 aa15.04■□□□□ -0
UBR4-207ENST00000425413 HDGFL2Q7Z4V5 671 aaPredicted RBP15.04■□□□□ -0
UBR4-207ENST00000425413 NCKAP5LQ9HCH0 1330 aa15.03■□□□□ -0
UBR4-207ENST00000425413 COG6Q9Y2V7 657 aa15.03■□□□□ -0
UBR4-207ENST00000425413 RIMS2Q9UQ26 1411 aa15.02■□□□□ -0
UBR4-207ENST00000425413 RGS3P49796 1198 aa15.02■□□□□ -0
UBR4-207ENST00000425413 TNNQ9UQP3 1299 aa15.02■□□□□ -0
UBR4-207ENST00000425413 PUS7Q96PZ0 661 aaKnown RBP15.02□□□□□ -0.01
UBR4-207ENST00000425413 ATAD2Q6PL18 1390 aa15.01□□□□□ -0.01
UBR4-207ENST00000425413 CLTCQ00610 1675 aaKnown RBP15.01□□□□□ -0.01
UBR4-207ENST00000425413 NUTM2FA1L443 756 aa15.01□□□□□ -0.01
UBR4-207ENST00000425413 TSR2Q969E8 191 aaKnown RBP15.01□□□□□ -0.01
UBR4-207ENST00000425413 CLUAP1Q96AJ1 413 aa15.01□□□□□ -0.01
UBR4-207ENST00000425413 ALKQ9UM73 1620 aa15.01□□□□□ -0.01
UBR4-207ENST00000425413 ABCC11Q96J66 1382 aa15.01□□□□□ -0.01
UBR4-207ENST00000425413 NOP58Q9Y2X3 529 aaKnown RBP15□□□□□ -0.01
UBR4-207ENST00000425413 A2ML1A8K2U0 1454 aa15□□□□□ -0.01
UBR4-207ENST00000425413 ZMYM3Q14202 1370 aa14.99□□□□□ -0.01
UBR4-207ENST00000425413 CEBPAP49715 358 aaPredicted RBP14.99□□□□□ -0.01
UBR4-207ENST00000425413 ZRANB1Q9UGI0 708 aa14.99□□□□□ -0.01
UBR4-207ENST00000425413 BACH2Q9BYV9 841 aa14.98□□□□□ -0.01
UBR4-207ENST00000425413 NSD2O96028 1365 aa14.98□□□□□ -0.01
UBR4-207ENST00000425413 METP08581 1390 aa14.98□□□□□ -0.01
UBR4-207ENST00000425413 KDM2BQ8NHM5 1336 aa14.98□□□□□ -0.01
UBR4-207ENST00000425413 SHPRHQ149N8 1683 aa14.98□□□□□ -0.01
UBR4-207ENST00000425413 NGEFQ8N5V2 710 aa14.97□□□□□ -0.01
UBR4-207ENST00000425413 MAPK8IP3Q9UPT6 1336 aa14.97□□□□□ -0.01
UBR4-207ENST00000425413 RARSP54136 660 aaKnown RBP14.97□□□□□ -0.01
UBR4-207ENST00000425413 NBR1Q14596 966 aa14.97□□□□□ -0.01
UBR4-207ENST00000425413 CENPQQ7L2Z9 268 aaPredicted RBP14.97□□□□□ -0.01
UBR4-207ENST00000425413 IPO9Q96P70 1041 aaKnown RBP14.97□□□□□ -0.01
UBR4-207ENST00000425413 PPP6R1Q9UPN7 881 aa14.97□□□□□ -0.01
UBR4-207ENST00000425413 CD163L1Q9NR16 1453 aa14.96□□□□□ -0.01
UBR4-207ENST00000425413 DIAPH1O60610 1272 aaKnown RBP14.96□□□□□ -0.02
UBR4-207ENST00000425413 NME9Q86XW9 330 aa14.96□□□□□ -0.02
UBR4-207ENST00000425413 ZBTB47Q9UFB7 747 aaPredicted RBP14.95□□□□□ -0.02
UBR4-207ENST00000425413 IGHDP01880 384 aa14.95□□□□□ -0.02
UBR4-207ENST00000425413 HMOX1P09601 288 aa14.95□□□□□ -0.02
UBR4-207ENST00000425413 RLBP1P12271 317 aa14.95□□□□□ -0.02
UBR4-207ENST00000425413 WDR63Q8IWG1 891 aa14.95□□□□□ -0.02
UBR4-207ENST00000425413 TMPOP42166 694 aaKnown RBP14.94□□□□□ -0.02
UBR4-207ENST00000425413 NINLQ9Y2I6 1382 aa14.94□□□□□ -0.02
UBR4-207ENST00000425413 ARHGEF40Q8TER5 1519 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms