RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.17□□□□□ -0.3
LINC01040-201ENST00000425048 CLCN1P35523 988 aa13.14□□□□□ -0.31
LINC01040-201ENST00000425048 KRI1Q8N9T8 703 aaKnown RBP13.14□□□□□ -0.31
LINC01040-201ENST00000425048 GPCPD1Q9NPB8 672 aa13.14□□□□□ -0.31
LINC01040-201ENST00000425048 USB1Q9BQ65 265 aaKnown RBP13.13□□□□□ -0.31
LINC01040-201ENST00000425048 MMP16P51512 607 aa13.12□□□□□ -0.31
LINC01040-201ENST00000425048 CYP4X1Q8N118 509 aa13.1□□□□□ -0.31
LINC01040-201ENST00000425048 FAM217BQ9NTX9 383 aaPredicted RBP13.09□□□□□ -0.31
LINC01040-201ENST00000425048 HOXA2O43364 376 aa13.08□□□□□ -0.32
LINC01040-201ENST00000425048 TOR4AQ9NXH8 423 aa13.08□□□□□ -0.32
LINC01040-201ENST00000425048 HLA-CQ95604 372 aa13.07□□□□□ -0.32
LINC01040-201ENST00000425048 DXOO77932 396 aaKnown RBP13.06□□□□□ -0.32
LINC01040-201ENST00000425048 NUTM1Q86Y26 1132 aa13.06□□□□□ -0.32
LINC01040-201ENST00000425048 AAASQ9NRG9 546 aa13.06□□□□□ -0.32
LINC01040-201ENST00000425048 ZNF775Q96BV0 537 aaPredicted RBP13.04□□□□□ -0.32
LINC01040-201ENST00000425048 TRIM32Q13049 653 aa13.03□□□□□ -0.32
LINC01040-201ENST00000425048 TTC24A2A3L6 582 aaPredicted RBP13.02□□□□□ -0.33
LINC01040-201ENST00000425048 POTECB2RU33 542 aa13.02□□□□□ -0.33
LINC01040-201ENST00000425048 WNT7AO00755 349 aa13.02□□□□□ -0.33
LINC01040-201ENST00000425048 ST8SIA5O15466 376 aa13.02□□□□□ -0.33
LINC01040-201ENST00000425048 CCDC24Q8N4L8 307 aa13.02□□□□□ -0.33
LINC01040-201ENST00000425048 AVPP01185 164 aa13.01□□□□□ -0.33
LINC01040-201ENST00000425048 GUCA2AQ02747 115 aa13.01□□□□□ -0.33
LINC01040-201ENST00000425048 BARGINQ6ZT62 677 aa13.01□□□□□ -0.33
LINC01040-201ENST00000425048 SSTR3P32745 418 aaPredicted RBP13□□□□□ -0.33
LINC01040-201ENST00000425048 CRIPAKQ8N1N5 446 aa13□□□□□ -0.33
LINC01040-201ENST00000425048 REPIN1Q9BWE0 567 aaKnown RBP13□□□□□ -0.33
LINC01040-201ENST00000425048 ZMYND10O75800 440 aa12.99□□□□□ -0.33
LINC01040-201ENST00000425048 SNIP1Q8TAD8 396 aaKnown RBP12.99□□□□□ -0.33
LINC01040-201ENST00000425048 SYMPKQ92797 1274 aaKnown RBP12.99□□□□□ -0.33
LINC01040-201ENST00000425048 AXIN1O15169 862 aa12.97□□□□□ -0.33
LINC01040-201ENST00000425048 JUNDP17535 347 aa12.97□□□□□ -0.33
LINC01040-201ENST00000425048 CTC1Q2NKJ3 1217 aa12.97□□□□□ -0.33
LINC01040-201ENST00000425048 FDX1P10109 184 aa12.96□□□□□ -0.33
LINC01040-201ENST00000425048 RETREG3Q86VR2 466 aa12.96□□□□□ -0.33
LINC01040-201ENST00000425048 ZC3H15Q8WU90 426 aaKnown RBP12.95□□□□□ -0.34
LINC01040-201ENST00000425048 MRGPRX2Q96LB1 330 aa12.95□□□□□ -0.34
LINC01040-201ENST00000425048 SMCPP49901 116 aaPredicted RBP12.94□□□□□ -0.34
LINC01040-201ENST00000425048 TTLL12Q14166 644 aaPredicted RBP12.94□□□□□ -0.34
LINC01040-201ENST00000425048 SPIRE2Q8WWL2 714 aa12.93□□□□□ -0.34
LINC01040-201ENST00000425048 C6orf229H3BNL8 230 aa12.92□□□□□ -0.34
LINC01040-201ENST00000425048 SMPD1P17405 629 aa12.92□□□□□ -0.34
LINC01040-201ENST00000425048 WNT7BP56706 349 aa12.92□□□□□ -0.34
LINC01040-201ENST00000425048 AMHR2Q16671 573 aa12.92□□□□□ -0.34
LINC01040-201ENST00000425048 DACH1Q9UI36 760 aa12.92□□□□□ -0.34
LINC01040-201ENST00000425048 PCDHGC3Q9UN70 934 aa12.92□□□□□ -0.34
LINC01040-201ENST00000425048 RC3H1Q5TC82 1133 aaKnown RBP12.91□□□□□ -0.34
LINC01040-201ENST00000425048 NUDT12Q9BQG2 462 aa12.9□□□□□ -0.34
LINC01040-201ENST00000425048 SKOR1P84550 965 aa12.89□□□□□ -0.35
LINC01040-201ENST00000425048 J3QL48 77 aa12.88□□□□□ -0.35
LINC01040-201ENST00000425048 NDUFV2P19404 249 aa12.87□□□□□ -0.35
LINC01040-201ENST00000425048 GIGYF2Q6Y7W6 1299 aaKnown RBP12.87□□□□□ -0.35
LINC01040-201ENST00000425048 MOXD2PA6NHM9 499 aa12.86□□□□□ -0.35
LINC01040-201ENST00000425048 MS4A1P11836 297 aa12.86□□□□□ -0.35
LINC01040-201ENST00000425048 PTCRAQ6ISU1 281 aaPredicted RBP12.86□□□□□ -0.35
LINC01040-201ENST00000425048 GMPR2Q9P2T1 348 aaKnown RBP12.86□□□□□ -0.35
LINC01040-201ENST00000425048 C11orf95C9JLR9 678 aaPredicted RBP12.85□□□□□ -0.35
LINC01040-201ENST00000425048 BEGAINQ9BUH8 593 aa12.85□□□□□ -0.35
LINC01040-201ENST00000425048 SPDYE5A6NIY4 337 aa12.83□□□□□ -0.36
LINC01040-201ENST00000425048 DIXDC1Q155Q3 683 aa12.83□□□□□ -0.36
LINC01040-201ENST00000425048 CCNYL3P0C7X3 344 aa12.82□□□□□ -0.36
LINC01040-201ENST00000425048 MTMR2Q13614 643 aa12.81□□□□□ -0.36
LINC01040-201ENST00000425048 PTPRNQ16849 979 aa12.81□□□□□ -0.36
LINC01040-201ENST00000425048 PRR7Q8TB68 274 aa12.81□□□□□ -0.36
LINC01040-201ENST00000425048 HPS1Q92902 700 aa12.81□□□□□ -0.36
LINC01040-201ENST00000425048 TREML4Q6UXN2 200 aa12.8□□□□□ -0.36
LINC01040-201ENST00000425048 AK7Q96M32 723 aa12.8□□□□□ -0.36
LINC01040-201ENST00000425048 EVA1BQ9NVM1 165 aa12.8□□□□□ -0.36
LINC01040-201ENST00000425048 TRIM66O15016 1216 aa12.79□□□□□ -0.36
LINC01040-201ENST00000425048 ALDH1A1P00352 501 aa12.79□□□□□ -0.36
LINC01040-201ENST00000425048 GJA5P36382 358 aa12.79□□□□□ -0.36
LINC01040-201ENST00000425048 EHBP1Q8NDI1 1231 aa12.79□□□□□ -0.36
LINC01040-201ENST00000425048 TBC1D2Q9BYX2 928 aa12.79□□□□□ -0.36
LINC01040-201ENST00000425048 ATP13A2Q9NQ11 1180 aa12.79□□□□□ -0.36
LINC01040-201ENST00000425048 DESI1Q6ICB0 168 aa12.78□□□□□ -0.36
LINC01040-201ENST00000425048 SIAH2O43255 324 aa12.77□□□□□ -0.37
LINC01040-201ENST00000425048 PARP9Q8IXQ6 854 aa12.77□□□□□ -0.37
LINC01040-201ENST00000425048 SH3BP2P78314 561 aa12.76□□□□□ -0.37
LINC01040-201ENST00000425048 KCNH2Q12809 1159 aa12.76□□□□□ -0.37
LINC01040-201ENST00000425048 SENP2Q9HC62 589 aa12.76□□□□□ -0.37
LINC01040-201ENST00000425048 UNC93B1Q9H1C4 597 aa12.75□□□□□ -0.37
LINC01040-201ENST00000425048 RSBN1LQ6PCB5 846 aaPredicted RBP12.74□□□□□ -0.37
LINC01040-201ENST00000425048 SPTLC1O15269 473 aa12.72□□□□□ -0.37
LINC01040-201ENST00000425048 BAP1Q92560 729 aa12.72□□□□□ -0.37
LINC01040-201ENST00000425048 PCDHB15Q9Y5E8 787 aa12.72□□□□□ -0.37
LINC01040-201ENST00000425048 WASF2Q9Y6W5 498 aa12.72□□□□□ -0.37
LINC01040-201ENST00000425048 LCE2AQ5TA79 106 aaPredicted RBP12.7□□□□□ -0.38
LINC01040-201ENST00000425048 TRIM47Q96LD4 638 aa12.7□□□□□ -0.38
LINC01040-201ENST00000425048 WFS1O76024 890 aa12.69□□□□□ -0.38
LINC01040-201ENST00000425048 SNRPBP14678 240 aaKnown RBP12.69□□□□□ -0.38
LINC01040-201ENST00000425048 LINC01559Q495D7 138 aa12.69□□□□□ -0.38
LINC01040-201ENST00000425048 LYPD8Q6UX82 237 aa12.69□□□□□ -0.38
LINC01040-201ENST00000425048 RIC3Q7Z5B4 369 aa12.69□□□□□ -0.38
LINC01040-201ENST00000425048 KIFC2Q96AC6 838 aa12.69□□□□□ -0.38
LINC01040-201ENST00000425048 ZBTB3Q9H5J0 574 aa12.69□□□□□ -0.38
LINC01040-201ENST00000425048 HRCP23327 699 aa12.68□□□□□ -0.38
LINC01040-201ENST00000425048 CTHP32929 405 aa12.67□□□□□ -0.38
LINC01040-201ENST00000425048 PRPF38BQ5VTL8 546 aaKnown RBP12.67□□□□□ -0.38
LINC01040-201ENST00000425048 ZNF511Q8NB15 262 aa12.67□□□□□ -0.38
LINC01040-201ENST00000425048 PLEKHG3A1L390 1219 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms