RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 UPF1Q92900 1129 aaKnown RBP eCLIP19.37■□□□□ 0.69
VRK3-203ENST00000424804 CDC42BPGQ6DT37 1551 aa19.36■□□□□ 0.69
VRK3-203ENST00000424804 CDK12Q9NYV4 1490 aaPredicted RBP19.36■□□□□ 0.69
VRK3-203ENST00000424804 PIK3C2GO75747 1445 aa19.36■□□□□ 0.69
VRK3-203ENST00000424804 ABCC11Q96J66 1382 aa19.36■□□□□ 0.69
VRK3-203ENST00000424804 PLEKHH1Q9ULM0 1364 aa19.36■□□□□ 0.69
VRK3-203ENST00000424804 TMEM132EQ6IEE7 984 aa19.36■□□□□ 0.69
VRK3-203ENST00000424804 KNDC1Q76NI1 1749 aa19.34■□□□□ 0.69
VRK3-203ENST00000424804 COL22A1Q8NFW1 1626 aaPredicted RBP19.34■□□□□ 0.69
VRK3-203ENST00000424804 C8orf37Q96NL8 207 aa19.34■□□□□ 0.69
VRK3-203ENST00000424804 STK26Q9P289 416 aa19.34■□□□□ 0.69
VRK3-203ENST00000424804 PXDNQ92626 1479 aa19.33■□□□□ 0.68
VRK3-203ENST00000424804 NRXN1Q9ULB1 1477 aa19.33■□□□□ 0.68
VRK3-203ENST00000424804 QTRT2Q9H974 415 aaKnown RBP19.32■□□□□ 0.68
VRK3-203ENST00000424804 C14orf93Q9H972 538 aaKnown RBP19.31■□□□□ 0.68
VRK3-203ENST00000424804 ADAMTS2O95450 1211 aa19.3■□□□□ 0.68
VRK3-203ENST00000424804 ESCO1Q5FWF5 840 aa19.3■□□□□ 0.68
VRK3-203ENST00000424804 SIRT1Q96EB6 747 aa19.3■□□□□ 0.68
VRK3-203ENST00000424804 RGS12O14924 1447 aa19.3■□□□□ 0.68
VRK3-203ENST00000424804 YTHDC2Q9H6S0 1430 aaKnown RBP19.3■□□□□ 0.68
VRK3-203ENST00000424804 MYOM2P54296 1465 aa19.29■□□□□ 0.68
VRK3-203ENST00000424804 FMN2Q9NZ56 1722 aa19.28■□□□□ 0.68
VRK3-203ENST00000424804 FOXO3O43524 673 aa19.28■□□□□ 0.68
VRK3-203ENST00000424804 RBM6P78332 1123 aaKnown RBP19.28■□□□□ 0.68
VRK3-203ENST00000424804 FNBP4Q8N3X1 1017 aaPredicted RBP19.28■□□□□ 0.68
VRK3-203ENST00000424804 CFAP70Q5T0N1 1121 aa19.27■□□□□ 0.68
VRK3-203ENST00000424804 NGLY1Q96IV0 654 aa19.27■□□□□ 0.68
VRK3-203ENST00000424804 NPHP3Q7Z494 1330 aa19.26■□□□□ 0.67
VRK3-203ENST00000424804 NUTM2FA1L443 756 aa19.26■□□□□ 0.67
VRK3-203ENST00000424804 XPCQ01831 940 aaPredicted RBP19.26■□□□□ 0.67
VRK3-203ENST00000424804 RAB3GAP2Q9H2M9 1393 aa19.26■□□□□ 0.67
VRK3-203ENST00000424804 RGPD8O14715 1765 aaPredicted RBP19.25■□□□□ 0.67
VRK3-203ENST00000424804 ACIN1Q9UKV3 1341 aaKnown RBP19.25■□□□□ 0.67
VRK3-203ENST00000424804 MARF1Q9Y4F3 1742 aaKnown RBP19.23■□□□□ 0.67
VRK3-203ENST00000424804 ATRNO75882 1429 aa19.23■□□□□ 0.67
VRK3-203ENST00000424804 BCL9LQ86UU0 1499 aa19.22■□□□□ 0.67
VRK3-203ENST00000424804 USP21Q9UK80 565 aa19.22■□□□□ 0.67
VRK3-203ENST00000424804 SPATA31A3Q5VYP0 1347 aa19.2■□□□□ 0.66
VRK3-203ENST00000424804 DHX57Q6P158 1386 aaKnown RBP19.19■□□□□ 0.66
VRK3-203ENST00000424804 ADGRB1O14514 1584 aa19.19■□□□□ 0.66
VRK3-203ENST00000424804 TRPC5Q9UL62 973 aaPredicted RBP19.19■□□□□ 0.66
VRK3-203ENST00000424804 KIF1AQ12756 1690 aa19.18■□□□□ 0.66
VRK3-203ENST00000424804 DLC1Q96QB1 1528 aa19.17■□□□□ 0.66
VRK3-203ENST00000424804 KRT28Q7Z3Y7 464 aa19.17■□□□□ 0.66
VRK3-203ENST00000424804 PRAM1Q96QH2 718 aa19.17■□□□□ 0.66
VRK3-203ENST00000424804 USP32Q8NFA0 1604 aa19.17■□□□□ 0.66
VRK3-203ENST00000424804 HRCP23327 699 aa19.14■□□□□ 0.65
VRK3-203ENST00000424804 PHF8Q9UPP1 1060 aa19.14■□□□□ 0.65
VRK3-203ENST00000424804 SLIT2O94813 1529 aa19.14■□□□□ 0.65
VRK3-203ENST00000424804 SAFB2Q14151 953 aaKnown RBP eCLIP19.13■□□□□ 0.65
VRK3-203ENST00000424804 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.13■□□□□ 0.65
VRK3-203ENST00000424804 ADGRB2O60241 1585 aa19.12■□□□□ 0.65
VRK3-203ENST00000424804 EP400Q96L91 3159 aa19.12■□□□□ 0.65
VRK3-203ENST00000424804 GJD4Q96KN9 370 aaPredicted RBP19.1■□□□□ 0.65
VRK3-203ENST00000424804 GLI3P10071 1580 aa19.1■□□□□ 0.65
VRK3-203ENST00000424804 TNS3Q68CZ2 1445 aa19.09■□□□□ 0.65
VRK3-203ENST00000424804 SBNO1A3KN83 1393 aa19.09■□□□□ 0.65
VRK3-203ENST00000424804 PRR36Q9H6K5 1346 aa19.09■□□□□ 0.65
VRK3-203ENST00000424804 CABLES1Q8TDN4 633 aa19.09■□□□□ 0.65
VRK3-203ENST00000424804 DCAF11Q8TEB1 546 aa19.09■□□□□ 0.65
VRK3-203ENST00000424804 TRAK1Q9UPV9 953 aa19.09■□□□□ 0.65
VRK3-203ENST00000424804 KDM2AQ9Y2K7 1162 aa19.09■□□□□ 0.65
VRK3-203ENST00000424804 ANKARQ7Z5J8 1434 aa19.08■□□□□ 0.65
VRK3-203ENST00000424804 UNC5CLQ8IV45 518 aa19.08■□□□□ 0.64
VRK3-203ENST00000424804 ABCA3Q99758 1704 aa19.08■□□□□ 0.64
VRK3-203ENST00000424804 TRPM3Q9HCF6 1732 aaPredicted RBP19.08■□□□□ 0.64
VRK3-203ENST00000424804 ATAD2Q6PL18 1390 aa19.07■□□□□ 0.64
VRK3-203ENST00000424804 PMFBP1Q8TBY8 1022 aa19.07■□□□□ 0.64
VRK3-203ENST00000424804 POGKQ9P215 609 aa19.07■□□□□ 0.64
VRK3-203ENST00000424804 RALGAPBQ86X10 1494 aa19.06■□□□□ 0.64
VRK3-203ENST00000424804 PSME1Q06323 249 aa19.06■□□□□ 0.64
VRK3-203ENST00000424804 HIRIP3Q9BW71 556 aaPredicted RBP19.06■□□□□ 0.64
VRK3-203ENST00000424804 STAC3Q96MF2 364 aa19.04■□□□□ 0.64
VRK3-203ENST00000424804 BRWD3Q6RI45 1802 aa19.04■□□□□ 0.64
VRK3-203ENST00000424804 ALS2Q96Q42 1657 aa19.04■□□□□ 0.64
VRK3-203ENST00000424804 MINK1Q8N4C8 1332 aaPredicted RBP19.03■□□□□ 0.64
VRK3-203ENST00000424804 PLCH1Q4KWH8 1693 aa19.02■□□□□ 0.64
VRK3-203ENST00000424804 FAM83GA6ND36 823 aa19.02■□□□□ 0.64
VRK3-203ENST00000424804 WASLO00401 505 aaPredicted RBP19.02■□□□□ 0.64
VRK3-203ENST00000424804 ARHGEF28Q8N1W1 1705 aaKnown RBP19.02■□□□□ 0.63
VRK3-203ENST00000424804 NWD2Q9ULI1 1742 aa19.02■□□□□ 0.63
VRK3-203ENST00000424804 TULP4Q9NRJ4 1543 aa19.01■□□□□ 0.63
VRK3-203ENST00000424804 ONECUT3O60422 494 aaPredicted RBP19.01■□□□□ 0.63
VRK3-203ENST00000424804 ARHGEF10O15013 1369 aa19.01■□□□□ 0.63
VRK3-203ENST00000424804 SRCAPQ6ZRS2 3230 aa19■□□□□ 0.63
VRK3-203ENST00000424804 VPS72Q15906 364 aa19■□□□□ 0.63
VRK3-203ENST00000424804 CRYBG1Q9Y4K1 1723 aa18.99■□□□□ 0.63
VRK3-203ENST00000424804 NRAPQ86VF7 1730 aa18.97■□□□□ 0.63
VRK3-203ENST00000424804 PLEKHG5O94827 1062 aa18.97■□□□□ 0.63
VRK3-203ENST00000424804 LMOD2Q6P5Q4 547 aa18.97■□□□□ 0.63
VRK3-203ENST00000424804 CCDC125Q86Z20 511 aa18.96■□□□□ 0.63
VRK3-203ENST00000424804 ATP7BP35670 1465 aa18.96■□□□□ 0.63
VRK3-203ENST00000424804 SEPT12Q8IYM1 358 aa18.95■□□□□ 0.62
VRK3-203ENST00000424804 EIF3AQ14152 1382 aaKnown RBP18.94■□□□□ 0.62
VRK3-203ENST00000424804 NUDT16Q96DE0 195 aaKnown RBP18.94■□□□□ 0.62
VRK3-203ENST00000424804 KIAA1210Q9ULL0 1709 aa18.94■□□□□ 0.62
VRK3-203ENST00000424804 HAP1P54257 671 aaPredicted RBP18.93■□□□□ 0.62
VRK3-203ENST00000424804 NBPF1Q3BBV0 1214 aa18.93■□□□□ 0.62
VRK3-203ENST00000424804 GPRASP1Q5JY77 1395 aa18.93■□□□□ 0.62
VRK3-203ENST00000424804 CDK19Q9BWU1 502 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms