RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 IQGAP1P46940 1657 aa15.6■□□□□ 0.09
PTPRN-204ENST00000423636 WWC1Q8IX03 1113 aa15.59■□□□□ 0.09
PTPRN-204ENST00000423636 CDK19Q9BWU1 502 aa15.59■□□□□ 0.09
PTPRN-204ENST00000423636 ARAP3Q8WWN8 1544 aa15.58■□□□□ 0.09
PTPRN-204ENST00000423636 BLMP54132 1417 aaPredicted RBP15.58■□□□□ 0.09
PTPRN-204ENST00000423636 VWDEQ8N2E2 1590 aa15.58■□□□□ 0.09
PTPRN-204ENST00000423636 HMOX1P09601 288 aa15.58■□□□□ 0.08
PTPRN-204ENST00000423636 ABCC3O15438 1527 aa15.58■□□□□ 0.08
PTPRN-204ENST00000423636 RBM33Q96EV2 1170 aaKnown RBP15.57■□□□□ 0.08
PTPRN-204ENST00000423636 CGNL1Q0VF96 1302 aa15.57■□□□□ 0.08
PTPRN-204ENST00000423636 HECW2Q9P2P5 1572 aa15.57■□□□□ 0.08
PTPRN-204ENST00000423636 PIK3C2GO75747 1445 aa15.57■□□□□ 0.08
PTPRN-204ENST00000423636 SIGLEC1Q9BZZ2 1709 aa15.57■□□□□ 0.08
PTPRN-204ENST00000423636 PDE4AP27815 886 aa15.56■□□□□ 0.08
PTPRN-204ENST00000423636 THUMPD2Q9BTF0 503 aaKnown RBP15.56■□□□□ 0.08
PTPRN-204ENST00000423636 ELL2O00472 640 aaPredicted RBP15.56■□□□□ 0.08
PTPRN-204ENST00000423636 MLH3Q9UHC1 1453 aa15.56■□□□□ 0.08
PTPRN-204ENST00000423636 STAC3Q96MF2 364 aa15.54■□□□□ 0.08
PTPRN-204ENST00000423636 SLC26A8Q96RN1 970 aa15.54■□□□□ 0.08
PTPRN-204ENST00000423636 MYOM1P52179 1685 aa15.54■□□□□ 0.08
PTPRN-204ENST00000423636 ANP32AP39687 249 aaKnown RBP15.54■□□□□ 0.08
PTPRN-204ENST00000423636 A0A1W2PP64 1363 aa15.53■□□□□ 0.08
PTPRN-204ENST00000423636 KDM5AP29375 1690 aaKnown RBP15.53■□□□□ 0.08
PTPRN-204ENST00000423636 FYB1O15117 783 aa15.53■□□□□ 0.08
PTPRN-204ENST00000423636 ZNF521Q96K83 1311 aa15.53■□□□□ 0.08
PTPRN-204ENST00000423636 FANCIQ9NVI1 1328 aa15.53■□□□□ 0.08
PTPRN-204ENST00000423636 RRS1Q15050 365 aaKnown RBP15.52■□□□□ 0.08
PTPRN-204ENST00000423636 IGHDP01880 384 aa15.52■□□□□ 0.07
PTPRN-204ENST00000423636 RLBP1P12271 317 aa15.51■□□□□ 0.07
PTPRN-204ENST00000423636 SLC52A1Q9NWF4 448 aa15.51■□□□□ 0.07
PTPRN-204ENST00000423636 CFAP53Q96M91 514 aa15.51■□□□□ 0.07
PTPRN-204ENST00000423636 ADGRB3O60242 1522 aa15.51■□□□□ 0.07
PTPRN-204ENST00000423636 ZMYM4Q5VZL5 1548 aa15.51■□□□□ 0.07
PTPRN-204ENST00000423636 LAMC1P11047 1609 aa15.51■□□□□ 0.07
PTPRN-204ENST00000423636 NME9Q86XW9 330 aa15.51■□□□□ 0.07
PTPRN-204ENST00000423636 NOP58Q9Y2X3 529 aaKnown RBP15.51■□□□□ 0.07
PTPRN-204ENST00000423636 SYNMO15061 1565 aa15.51■□□□□ 0.07
PTPRN-204ENST00000423636 DIP2CQ9Y2E4 1556 aa15.51■□□□□ 0.07
PTPRN-204ENST00000423636 EMILIN1Q9Y6C2 1016 aa15.5■□□□□ 0.07
PTPRN-204ENST00000423636 RUNDC1Q96C34 613 aa15.5■□□□□ 0.07
PTPRN-204ENST00000423636 MYOM2P54296 1465 aa15.5■□□□□ 0.07
PTPRN-204ENST00000423636 MYO5BQ9ULV0 1848 aa15.5■□□□□ 0.07
PTPRN-204ENST00000423636 TRHP20396 242 aaPredicted RBP15.5■□□□□ 0.07
PTPRN-204ENST00000423636 E9PSI1 815 aa15.49■□□□□ 0.07
PTPRN-204ENST00000423636 ZBTB47Q9UFB7 747 aaPredicted RBP15.48■□□□□ 0.07
PTPRN-204ENST00000423636 RPGRIP1LQ68CZ1 1315 aa15.47■□□□□ 0.07
PTPRN-204ENST00000423636 ADGRB1O14514 1584 aa15.47■□□□□ 0.07
PTPRN-204ENST00000423636 NUTM2GQ5VZR2 741 aa15.47■□□□□ 0.07
PTPRN-204ENST00000423636 EXOSC9Q06265 439 aaKnown RBP15.46■□□□□ 0.07
PTPRN-204ENST00000423636 CAMSAP1Q5T5Y3 1602 aa15.46■□□□□ 0.07
PTPRN-204ENST00000423636 QRICH2Q9H0J4 1663 aa15.46■□□□□ 0.07
PTPRN-204ENST00000423636 DCTN1Q14203 1278 aa15.46■□□□□ 0.06
PTPRN-204ENST00000423636 RIPK4P57078 832 aa15.45■□□□□ 0.06
PTPRN-204ENST00000423636 PMFBP1Q8TBY8 1022 aa15.45■□□□□ 0.06
PTPRN-204ENST00000423636 TULP4Q9NRJ4 1543 aa15.45■□□□□ 0.06
PTPRN-204ENST00000423636 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.45■□□□□ 0.06
PTPRN-204ENST00000423636 TERF2IPQ9NYB0 399 aa15.45■□□□□ 0.06
PTPRN-204ENST00000423636 GLI2P10070 1586 aa15.45■□□□□ 0.06
PTPRN-204ENST00000423636 HDGFL2Q7Z4V5 671 aaPredicted RBP15.45■□□□□ 0.06
PTPRN-204ENST00000423636 NEO1Q92859 1461 aa15.44■□□□□ 0.06
PTPRN-204ENST00000423636 BACH2Q9BYV9 841 aa15.44■□□□□ 0.06
PTPRN-204ENST00000423636 MAPK8IP3Q9UPT6 1336 aa15.44■□□□□ 0.06
PTPRN-204ENST00000423636 PHACTR3Q96KR7 559 aa15.44■□□□□ 0.06
PTPRN-204ENST00000423636 IPO9Q96P70 1041 aaKnown RBP15.44■□□□□ 0.06
PTPRN-204ENST00000423636 YTHDC2Q9H6S0 1430 aaKnown RBP15.44■□□□□ 0.06
PTPRN-204ENST00000423636 METP08581 1390 aa15.43■□□□□ 0.06
PTPRN-204ENST00000423636 PPLO60437 1756 aa15.43■□□□□ 0.06
PTPRN-204ENST00000423636 RIMBP3CA6NJZ7 1639 aa15.43■□□□□ 0.06
PTPRN-204ENST00000423636 RIMBP3BA6NNM3 1639 aa15.43■□□□□ 0.06
PTPRN-204ENST00000423636 RIMBP3Q9UFD9 1639 aa15.43■□□□□ 0.06
PTPRN-204ENST00000423636 NEXMIFQ5QGS0 1516 aa15.43■□□□□ 0.06
PTPRN-204ENST00000423636 FAM83GA6ND36 823 aa15.43■□□□□ 0.06
PTPRN-204ENST00000423636 PRKAR2BP31323 418 aa15.43■□□□□ 0.06
PTPRN-204ENST00000423636 RARSP54136 660 aaKnown RBP15.43■□□□□ 0.06
PTPRN-204ENST00000423636 NRXN1Q9ULB1 1477 aa15.42■□□□□ 0.06
PTPRN-204ENST00000423636 PIK3C2BO00750 1634 aa15.42■□□□□ 0.06
PTPRN-204ENST00000423636 ANKRD36BQ8N2N9 1353 aa15.42■□□□□ 0.06
PTPRN-204ENST00000423636 TRMT2AQ8IZ69 625 aaKnown RBP15.41■□□□□ 0.06
PTPRN-204ENST00000423636 SMC4Q9NTJ3 1288 aa15.41■□□□□ 0.06
PTPRN-204ENST00000423636 PCDHB15Q9Y5E8 787 aa15.41■□□□□ 0.06
PTPRN-204ENST00000423636 LMTK2Q8IWU2 1503 aa15.41■□□□□ 0.06
PTPRN-204ENST00000423636 NKTRP30414 1462 aaKnown RBP15.41■□□□□ 0.06
PTPRN-204ENST00000423636 DIAPH1O60610 1272 aaKnown RBP15.41■□□□□ 0.06
PTPRN-204ENST00000423636 TMPOP42166 694 aaKnown RBP15.4■□□□□ 0.06
PTPRN-204ENST00000423636 ZBTB7CA1YPR0 619 aa15.4■□□□□ 0.06
PTPRN-204ENST00000423636 POLR3AO14802 1390 aaPredicted RBP15.4■□□□□ 0.06
PTPRN-204ENST00000423636 IFT172Q9UG01 1749 aa15.4■□□□□ 0.06
PTPRN-204ENST00000423636 SLC24A1O60721 1099 aa15.39■□□□□ 0.05
PTPRN-204ENST00000423636 LTKP29376 864 aa15.39■□□□□ 0.05
PTPRN-204ENST00000423636 RICTORQ6R327 1708 aa15.39■□□□□ 0.05
PTPRN-204ENST00000423636 FTSJ3Q8IY81 847 aaKnown RBP15.38■□□□□ 0.05
PTPRN-204ENST00000423636 NUDT16Q96DE0 195 aaKnown RBP15.38■□□□□ 0.05
PTPRN-204ENST00000423636 POLKQ9UBT6 870 aa15.38■□□□□ 0.05
PTPRN-204ENST00000423636 TRIM35Q9UPQ4 493 aa15.38■□□□□ 0.05
PTPRN-204ENST00000423636 ZMYM3Q14202 1370 aa15.38■□□□□ 0.05
PTPRN-204ENST00000423636 SEC24BO95487 1268 aa15.38■□□□□ 0.05
PTPRN-204ENST00000423636 ITPRIPQ8IWB1 547 aa15.38■□□□□ 0.05
PTPRN-204ENST00000423636 C1orf115Q9H7X2 142 aa15.38■□□□□ 0.05
PTPRN-204ENST00000423636 NPC1L1Q9UHC9 1359 aa15.37■□□□□ 0.05
PTPRN-204ENST00000423636 C14orf37Q86TY3 774 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms