RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 ADGRL3Q9HAR2 1447 aa24.1■■□□□ 1.45
COL7A1-202ENST00000422991 WAPLQ7Z5K2 1190 aa24.1■■□□□ 1.45
COL7A1-202ENST00000422991 ADGRB2O60241 1585 aa24.09■■□□□ 1.45
COL7A1-202ENST00000422991 RBM33Q96EV2 1170 aaKnown RBP24.09■■□□□ 1.45
COL7A1-202ENST00000422991 USP47Q96K76 1375 aa24.08■■□□□ 1.45
COL7A1-202ENST00000422991 PIP4K2BP78356 416 aa24.07■■□□□ 1.44
COL7A1-202ENST00000422991 POGKQ9P215 609 aa24.07■■□□□ 1.44
COL7A1-202ENST00000422991 CDC42BPGQ6DT37 1551 aa24.07■■□□□ 1.44
COL7A1-202ENST00000422991 SCAF1Q9H7N4 1312 aaKnown RBP24.07■■□□□ 1.44
COL7A1-202ENST00000422991 CENPJQ9HC77 1338 aaPredicted RBP24.06■■□□□ 1.44
COL7A1-202ENST00000422991 SAFB2Q14151 953 aaKnown RBP eCLIP24.04■■□□□ 1.44
COL7A1-202ENST00000422991 DCCP43146 1447 aa24.03■■□□□ 1.44
COL7A1-202ENST00000422991 MSH6P52701 1360 aa24.03■■□□□ 1.44
COL7A1-202ENST00000422991 C14orf37Q86TY3 774 aa24.02■■□□□ 1.44
COL7A1-202ENST00000422991 FMN2Q9NZ56 1722 aa24.01■■□□□ 1.43
COL7A1-202ENST00000422991 SBNO2Q9Y2G9 1366 aa24■■□□□ 1.43
COL7A1-202ENST00000422991 C19orf44Q9H6X5 657 aa23.99■■□□□ 1.43
COL7A1-202ENST00000422991 MINK1Q8N4C8 1332 aaPredicted RBP23.98■■□□□ 1.43
COL7A1-202ENST00000422991 TULP4Q9NRJ4 1543 aa23.98■■□□□ 1.43
COL7A1-202ENST00000422991 ST20-MTHFSA0A0A6YYL1 179 aa23.96■■□□□ 1.43
COL7A1-202ENST00000422991 HSPA1LP34931 641 aa23.96■■□□□ 1.43
COL7A1-202ENST00000422991 EIF4G2P78344 907 aaKnown RBP eCLIP23.95■■□□□ 1.42
COL7A1-202ENST00000422991 HIRIP3Q9BW71 556 aaPredicted RBP23.95■■□□□ 1.42
COL7A1-202ENST00000422991 HSPA5P11021 654 aaKnown RBP23.93■■□□□ 1.42
COL7A1-202ENST00000422991 TESK2Q96S53 571 aa23.93■■□□□ 1.42
COL7A1-202ENST00000422991 MST1RQ04912 1400 aa23.93■■□□□ 1.42
COL7A1-202ENST00000422991 USP32Q8NFA0 1604 aa23.92■■□□□ 1.42
COL7A1-202ENST00000422991 ATF3P18847 181 aa23.92■■□□□ 1.42
COL7A1-202ENST00000422991 CADPS2Q86UW7 1296 aa23.92■■□□□ 1.42
COL7A1-202ENST00000422991 WASLO00401 505 aaPredicted RBP23.9■■□□□ 1.42
COL7A1-202ENST00000422991 RGPD8O14715 1765 aaPredicted RBP23.89■■□□□ 1.42
COL7A1-202ENST00000422991 TOPAZ1Q8N9V7 1692 aa23.89■■□□□ 1.41
COL7A1-202ENST00000422991 ANKARQ7Z5J8 1434 aa23.88■■□□□ 1.41
COL7A1-202ENST00000422991 ATP7BP35670 1465 aa23.87■■□□□ 1.41
COL7A1-202ENST00000422991 ITSN1Q15811 1721 aa23.87■■□□□ 1.41
COL7A1-202ENST00000422991 C1orf167Q5SNV9 1468 aa23.87■■□□□ 1.41
COL7A1-202ENST00000422991 EVC2Q86UK5 1308 aa23.86■■□□□ 1.41
COL7A1-202ENST00000422991 CDK19Q9BWU1 502 aa23.85■■□□□ 1.41
COL7A1-202ENST00000422991 DISP3Q9P2K9 1392 aa23.85■■□□□ 1.41
COL7A1-202ENST00000422991 ROBO1Q9Y6N7 1651 aa23.84■■□□□ 1.41
COL7A1-202ENST00000422991 SLC24A1O60721 1099 aa23.83■■□□□ 1.41
COL7A1-202ENST00000422991 SLAIN2Q9P270 581 aa23.83■■□□□ 1.41
COL7A1-202ENST00000422991 PRR36Q9H6K5 1346 aa23.83■■□□□ 1.4
COL7A1-202ENST00000422991 KIF1AQ12756 1690 aa23.82■■□□□ 1.4
COL7A1-202ENST00000422991 NUTM2FA1L443 756 aa23.8■■□□□ 1.4
COL7A1-202ENST00000422991 SRPK2P78362 688 aaKnown RBP23.8■■□□□ 1.4
COL7A1-202ENST00000422991 TMF1P82094 1093 aa23.8■■□□□ 1.4
COL7A1-202ENST00000422991 CABP2Q9NPB3 220 aa23.8■■□□□ 1.4
COL7A1-202ENST00000422991 ATAD2Q6PL18 1390 aa23.78■■□□□ 1.4
COL7A1-202ENST00000422991 NUDT16Q96DE0 195 aaKnown RBP23.77■■□□□ 1.4
COL7A1-202ENST00000422991 NHSL1Q5SYE7 1610 aa23.77■■□□□ 1.4
COL7A1-202ENST00000422991 MYOM1P52179 1685 aa23.76■■□□□ 1.39
COL7A1-202ENST00000422991 PUS7Q96PZ0 661 aaKnown RBP23.76■■□□□ 1.39
COL7A1-202ENST00000422991 BRINP3Q76B58 766 aa23.75■■□□□ 1.39
COL7A1-202ENST00000422991 ORAI2Q96SN7 254 aa23.74■■□□□ 1.39
COL7A1-202ENST00000422991 PPIP5K1Q6PFW1 1433 aa23.74■■□□□ 1.39
COL7A1-202ENST00000422991 CDCA8Q53HL2 280 aa23.73■■□□□ 1.39
COL7A1-202ENST00000422991 ESCO1Q5FWF5 840 aa23.73■■□□□ 1.39
COL7A1-202ENST00000422991 AHDC1Q5TGY3 1603 aaPredicted RBP23.73■■□□□ 1.39
COL7A1-202ENST00000422991 CCDC61Q9Y6R9 512 aa23.72■■□□□ 1.39
COL7A1-202ENST00000422991 MED1Q15648 1581 aaPredicted RBP23.72■■□□□ 1.39
COL7A1-202ENST00000422991 C11orf95C9JLR9 678 aaPredicted RBP23.7■■□□□ 1.38
COL7A1-202ENST00000422991 PHF8Q9UPP1 1060 aa23.7■■□□□ 1.38
COL7A1-202ENST00000422991 AKAP12Q02952 1782 aa23.7■■□□□ 1.38
COL7A1-202ENST00000422991 NINLQ9Y2I6 1382 aa23.68■■□□□ 1.38
COL7A1-202ENST00000422991 PHLPP1O60346 1717 aa23.67■■□□□ 1.38
COL7A1-202ENST00000422991 POLR3AO14802 1390 aaPredicted RBP23.67■■□□□ 1.38
COL7A1-202ENST00000422991 PLEKHG3A1L390 1219 aa23.67■■□□□ 1.38
COL7A1-202ENST00000422991 KIF7Q2M1P5 1343 aa23.66■■□□□ 1.38
COL7A1-202ENST00000422991 PMFBP1Q8TBY8 1022 aa23.66■■□□□ 1.38
COL7A1-202ENST00000422991 MON2Q7Z3U7 1717 aa23.65■■□□□ 1.38
COL7A1-202ENST00000422991 PXDNQ92626 1479 aa23.65■■□□□ 1.38
COL7A1-202ENST00000422991 CD163L1Q9NR16 1453 aa23.65■■□□□ 1.38
COL7A1-202ENST00000422991 CABP1Q9NZU7 370 aa23.65■■□□□ 1.38
COL7A1-202ENST00000422991 COL16A1Q07092 1604 aaPredicted RBP23.65■■□□□ 1.38
COL7A1-202ENST00000422991 CCDC7Q96M83 1385 aa23.65■■□□□ 1.38
COL7A1-202ENST00000422991 TRPM3Q9HCF6 1732 aaPredicted RBP23.64■■□□□ 1.37
COL7A1-202ENST00000422991 NPHP3Q7Z494 1330 aa23.63■■□□□ 1.37
COL7A1-202ENST00000422991 NRKQ7Z2Y5 1582 aa23.63■■□□□ 1.37
COL7A1-202ENST00000422991 ACEP12821 1306 aa23.62■■□□□ 1.37
COL7A1-202ENST00000422991 WASHC2AQ641Q2 1341 aa23.62■■□□□ 1.37
COL7A1-202ENST00000422991 CPSF1Q10570 1443 aaKnown RBP23.62■■□□□ 1.37
COL7A1-202ENST00000422991 FOXO3O43524 673 aa23.61■■□□□ 1.37
COL7A1-202ENST00000422991 ILDR2Q71H61 639 aa23.61■■□□□ 1.37
COL7A1-202ENST00000422991 NGDNQ8NEJ9 315 aaKnown RBP23.61■■□□□ 1.37
COL7A1-202ENST00000422991 TMC1Q8TDI8 760 aa23.61■■□□□ 1.37
COL7A1-202ENST00000422991 DDX17Q92841 729 aaKnown RBP23.61■■□□□ 1.37
COL7A1-202ENST00000422991 POLR3GLQ9BT43 218 aa23.61■■□□□ 1.37
COL7A1-202ENST00000422991 SLC12A5Q9H2X9 1139 aa23.61■■□□□ 1.37
COL7A1-202ENST00000422991 USP6P35125 1406 aa23.59■■□□□ 1.37
COL7A1-202ENST00000422991 A0A1W2PP64 1363 aa23.58■■□□□ 1.37
COL7A1-202ENST00000422991 ANKRD36BQ8N2N9 1353 aa23.58■■□□□ 1.37
COL7A1-202ENST00000422991 SOS2Q07890 1332 aaPredicted RBP23.58■■□□□ 1.36
COL7A1-202ENST00000422991 JCADQ9P266 1359 aa23.57■■□□□ 1.36
COL7A1-202ENST00000422991 PHF23Q9BUL5 403 aaPredicted RBP23.57■■□□□ 1.36
COL7A1-202ENST00000422991 ALS2Q96Q42 1657 aa23.57■■□□□ 1.36
COL7A1-202ENST00000422991 XPCQ01831 940 aaPredicted RBP23.56■■□□□ 1.36
COL7A1-202ENST00000422991 PSME1Q06323 249 aa23.55■■□□□ 1.36
COL7A1-202ENST00000422991 TERF2IPQ9NYB0 399 aa23.55■■□□□ 1.36
COL7A1-202ENST00000422991 KTN1Q86UP2 1357 aaKnown RBP23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms