RNA–Protein interactions for RNA: ENST00000422392.6

CDH1-202, Transcript of cadherin 1, humanhuman

TSL 1 (best) BASIC

Gene CDH1, Length 2,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-202ENST00000422392 ZC3H13Q5T200 1668 aaKnown RBP20.47■□□□□ 0.87
CDH1-202ENST00000422392 PPM1GO15355 546 aaPredicted RBP20.47■□□□□ 0.87
CDH1-202ENST00000422392 ZNF518AQ6AHZ1 1483 aa20.46■□□□□ 0.87
CDH1-202ENST00000422392 C14orf93Q9H972 538 aaKnown RBP20.45■□□□□ 0.86
CDH1-202ENST00000422392 SETBP1Q9Y6X0 1596 aa20.45■□□□□ 0.86
CDH1-202ENST00000422392 LMTK2Q8IWU2 1503 aa20.45■□□□□ 0.86
CDH1-202ENST00000422392 TCP11L2Q8N4U5 519 aa20.44■□□□□ 0.86
CDH1-202ENST00000422392 MTHFSP49914 203 aa20.44■□□□□ 0.86
CDH1-202ENST00000422392 TNNQ9UQP3 1299 aa20.44■□□□□ 0.86
CDH1-202ENST00000422392 BCL2L13Q9BXK5 485 aa20.43■□□□□ 0.86
CDH1-202ENST00000422392 USP35Q9P2H5 1018 aa20.43■□□□□ 0.86
CDH1-202ENST00000422392 DAXXQ9UER7 740 aaPredicted RBP20.43■□□□□ 0.86
CDH1-202ENST00000422392 ADGRB1O14514 1584 aa20.43■□□□□ 0.86
CDH1-202ENST00000422392 FRMPD1Q5SYB0 1578 aa20.42■□□□□ 0.86
CDH1-202ENST00000422392 SAFB2Q14151 953 aaKnown RBP eCLIP20.42■□□□□ 0.86
CDH1-202ENST00000422392 RUNDC1Q96C34 613 aa20.42■□□□□ 0.86
CDH1-202ENST00000422392 CLUAP1Q96AJ1 413 aa20.41■□□□□ 0.86
CDH1-202ENST00000422392 PDE3AQ14432 1141 aa20.41■□□□□ 0.86
CDH1-202ENST00000422392 CGNL1Q0VF96 1302 aa20.41■□□□□ 0.86
CDH1-202ENST00000422392 NFKBIBQ15653 356 aa20.4■□□□□ 0.86
CDH1-202ENST00000422392 NGEFQ8N5V2 710 aa20.4■□□□□ 0.86
CDH1-202ENST00000422392 RARSP54136 660 aaKnown RBP20.39■□□□□ 0.85
CDH1-202ENST00000422392 SIGLEC1Q9BZZ2 1709 aa20.38■□□□□ 0.85
CDH1-202ENST00000422392 RLBP1P12271 317 aa20.38■□□□□ 0.85
CDH1-202ENST00000422392 VIRMAQ69YN4 1812 aaKnown RBP20.38■□□□□ 0.85
CDH1-202ENST00000422392 IQSEC2Q5JU85 1478 aa20.38■□□□□ 0.85
CDH1-202ENST00000422392 CABP2Q9NPB3 220 aa20.38■□□□□ 0.85
CDH1-202ENST00000422392 POGZQ7Z3K3 1410 aa20.37■□□□□ 0.85
CDH1-202ENST00000422392 CD109Q6YHK3 1445 aa20.37■□□□□ 0.85
CDH1-202ENST00000422392 SEC24BO95487 1268 aa20.37■□□□□ 0.85
CDH1-202ENST00000422392 GLI2P10070 1586 aa20.36■□□□□ 0.85
CDH1-202ENST00000422392 NPM1P06748 294 aaKnown RBP eCLIP20.36■□□□□ 0.85
CDH1-202ENST00000422392 IL27Q8NEV9 243 aa20.35■□□□□ 0.85
CDH1-202ENST00000422392 RAPGEF3O95398 923 aa20.35■□□□□ 0.85
CDH1-202ENST00000422392 HECW2Q9P2P5 1572 aa20.34■□□□□ 0.85
CDH1-202ENST00000422392 ABCC3O15438 1527 aa20.34■□□□□ 0.85
CDH1-202ENST00000422392 TULP4Q9NRJ4 1543 aa20.34■□□□□ 0.85
CDH1-202ENST00000422392 ARHGEF28Q8N1W1 1705 aaKnown RBP20.34■□□□□ 0.85
CDH1-202ENST00000422392 U2AF1L5P0DN76 240 aaPredicted RBP20.34■□□□□ 0.85
CDH1-202ENST00000422392 U2AF1Q01081 240 aaKnown RBP eCLIP20.34■□□□□ 0.85
CDH1-202ENST00000422392 PHF23Q9BUL5 403 aaPredicted RBP20.34■□□□□ 0.85
CDH1-202ENST00000422392 PCDHB15Q9Y5E8 787 aa20.33■□□□□ 0.85
CDH1-202ENST00000422392 USP19O94966 1318 aa20.33■□□□□ 0.84
CDH1-202ENST00000422392 CFAP53Q96M91 514 aa20.33■□□□□ 0.84
CDH1-202ENST00000422392 STK26Q9P289 416 aa20.33■□□□□ 0.84
CDH1-202ENST00000422392 EVC2Q86UK5 1308 aa20.32■□□□□ 0.84
CDH1-202ENST00000422392 CAMSAP1Q5T5Y3 1602 aa20.31■□□□□ 0.84
CDH1-202ENST00000422392 MLH3Q9UHC1 1453 aa20.31■□□□□ 0.84
CDH1-202ENST00000422392 NINLQ9Y2I6 1382 aa20.31■□□□□ 0.84
CDH1-202ENST00000422392 USP32Q8NFA0 1604 aa20.31■□□□□ 0.84
CDH1-202ENST00000422392 WDR63Q8IWG1 891 aa20.31■□□□□ 0.84
CDH1-202ENST00000422392 RPGRIP1LQ68CZ1 1315 aa20.3■□□□□ 0.84
CDH1-202ENST00000422392 ANKRD36BQ8N2N9 1353 aa20.29■□□□□ 0.84
CDH1-202ENST00000422392 TSR2Q969E8 191 aaKnown RBP20.29■□□□□ 0.84
CDH1-202ENST00000422392 FRAT2O75474 233 aaPredicted RBP20.28■□□□□ 0.84
CDH1-202ENST00000422392 RTN4Q9NQC3 1192 aaKnown RBP20.28■□□□□ 0.84
CDH1-202ENST00000422392 NEXMIFQ5QGS0 1516 aa20.28■□□□□ 0.84
CDH1-202ENST00000422392 VGFO15240 615 aaPredicted RBP20.28■□□□□ 0.84
CDH1-202ENST00000422392 GGNBP2Q9H3C7 697 aa20.28■□□□□ 0.84
CDH1-202ENST00000422392 MAPK8IP3Q9UPT6 1336 aa20.27■□□□□ 0.84
CDH1-202ENST00000422392 MYO5BQ9ULV0 1848 aa20.27■□□□□ 0.84
CDH1-202ENST00000422392 IDI1Q13907 227 aa20.27■□□□□ 0.83
CDH1-202ENST00000422392 U2SURPO15042 1029 aaKnown RBP20.26■□□□□ 0.83
CDH1-202ENST00000422392 GSE1Q14687 1217 aa20.26■□□□□ 0.83
CDH1-202ENST00000422392 CFAP74Q9C0B2 1584 aa20.26■□□□□ 0.83
CDH1-202ENST00000422392 SRPK2P78362 688 aaKnown RBP20.26■□□□□ 0.83
CDH1-202ENST00000422392 A0A1W2PP64 1363 aa20.25■□□□□ 0.83
CDH1-202ENST00000422392 CCDC27Q2M243 656 aa20.25■□□□□ 0.83
CDH1-202ENST00000422392 PIK3C2BO00750 1634 aa20.25■□□□□ 0.83
CDH1-202ENST00000422392 PDZRN3Q9UPQ7 1066 aa20.25■□□□□ 0.83
CDH1-202ENST00000422392 PMFBP1Q8TBY8 1022 aa20.24■□□□□ 0.83
CDH1-202ENST00000422392 MYH16Q9H6N6 1097 aa20.23■□□□□ 0.83
CDH1-202ENST00000422392 MINK1Q8N4C8 1332 aaPredicted RBP20.22■□□□□ 0.83
CDH1-202ENST00000422392 NLRP1Q9C000 1473 aa20.21■□□□□ 0.83
CDH1-202ENST00000422392 ADGRB2O60241 1585 aa20.2■□□□□ 0.82
CDH1-202ENST00000422392 NSD2O96028 1365 aa20.2■□□□□ 0.82
CDH1-202ENST00000422392 EXOSC9Q06265 439 aaKnown RBP20.2■□□□□ 0.82
CDH1-202ENST00000422392 FTSJ3Q8IY81 847 aaKnown RBP20.2■□□□□ 0.82
CDH1-202ENST00000422392 MVPQ14764 893 aaKnown RBP20.19■□□□□ 0.82
CDH1-202ENST00000422392 SLKQ9H2G2 1235 aaPredicted RBP20.19■□□□□ 0.82
CDH1-202ENST00000422392 BRPF3Q9ULD4 1205 aa20.19■□□□□ 0.82
CDH1-202ENST00000422392 DIP2CQ9Y2E4 1556 aa20.19■□□□□ 0.82
CDH1-202ENST00000422392 ABCC11Q96J66 1382 aa20.18■□□□□ 0.82
CDH1-202ENST00000422392 PLEKHF1Q96S99 279 aa20.18■□□□□ 0.82
CDH1-202ENST00000422392 TMPOP42166 694 aaKnown RBP20.18■□□□□ 0.82
CDH1-202ENST00000422392 ZKSCAN2Q63HK3 967 aa20.18■□□□□ 0.82
CDH1-202ENST00000422392 PUS7Q96PZ0 661 aaKnown RBP20.18■□□□□ 0.82
CDH1-202ENST00000422392 SMC4Q9NTJ3 1288 aa20.18■□□□□ 0.82
CDH1-202ENST00000422392 TRIM35Q9UPQ4 493 aa20.18■□□□□ 0.82
CDH1-202ENST00000422392 DZIP1LQ8IYY4 767 aaKnown RBP20.17■□□□□ 0.82
CDH1-202ENST00000422392 PRAM1Q96QH2 718 aa20.17■□□□□ 0.82
CDH1-202ENST00000422392 FYB1O15117 783 aa20.17■□□□□ 0.82
CDH1-202ENST00000422392 RWDD1Q9H446 243 aaPredicted RBP20.17■□□□□ 0.82
CDH1-202ENST00000422392 TRIM27P14373 513 aa20.15■□□□□ 0.82
CDH1-202ENST00000422392 OSCARQ8IYS5 282 aa20.15■□□□□ 0.82
CDH1-202ENST00000422392 SSH1Q8WYL5 1049 aa20.15■□□□□ 0.82
CDH1-202ENST00000422392 YEATS2Q9ULM3 1422 aa20.15■□□□□ 0.82
CDH1-202ENST00000422392 FBLN1P23142 703 aa20.15■□□□□ 0.82
CDH1-202ENST00000422392 AAMPQ13685 434 aa20.14■□□□□ 0.82
CDH1-202ENST00000422392 POGKQ9P215 609 aa20.14■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms